Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0021640 | OGI:04079880 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:25238337-25240881 | ||||||||
| Gene Symbol | SIT2 | ||||||||||
| DNA seq | atcagaggagaaaatttatagtgggaggtaaagcccgaaatgtttaatttcagatctgttatttctcagctcttatctgaacactgagctattctcgtaacaccactttacatcatagatataaacataacaacaccaaagttctgatcttaaacaaaacaggatgatactagttaggtactgattaactacatccggctgatgggaacgggtcatcatctacctccagagaggtcagagaaggtgcctgcgctggtggatgtcatcgggtaggacatgacgtaggggtcgaacccctggtcctgcatgagcgccagcatgttgaagctctggtacgtcggcgacagctccggcagcggcacgtcgccttccaggtactgcacaagctgcctcgtccccggccgtgcgccgggcagcgggtgcgagcacagcaggcccagccgcagcacgaggctcgcctcgctctcgacgaagtcgccgtgcaggcgcgggtccaccgtgtccgtgatcgccccggcgcgccaccggtcgagcacccagtcgacgagcacgacgcggttgtcgcgcgcgtcctgcgccacgggcttccgcccgcacgccacctccagcatgaaggccccgaacgcgaacacgtccgacgccttggacgccttgccggtgtgccccagctccggcgccaggtagcccatggtgcccaccacgtgcgtcgtgtgcgggtcggtgccgtggtcgtacagccgcgccaggccgaagtcgccgagccggccgttcatgtcggcgtcgagcagcacgttgctggccttgatgtccctgtgcaccaccacctgctcccagtcctcgtggaggtagagcagcccggacgcgacgcccctgatgatgcggaacctctgcgcccatctcagggtgatcttgccctggtcgtacagctgcttgtccaggctgccgttgggcatgtagtcgtacaccagcaggagctcgcccttgcgccggcagtagccgagcagctgcacgaggttccggtgccggagccggccgatgctgaccacctccgccacgaactccctcatcccctgcctcgacccgtgcgccaccttcttcacggcgacctccgccttggacgacgggagcacgccacggtacacgcgcccgaacccgccgatgccgaggagccgcttgtcgctgaacccgtcggtggcgtggaacaggtccttgtacgagaacctgtgaggcccgaacgtcacctcccactcctccttgagctccgagaacatgcgccgccgccgcatgaacacgaacacggcggcggccaccgcgaagacgagcaccgccgaggctatcggcagcacgatctcaagcgtcttggaccgcggcttggggaacgtgaccggcagggagggcagggatgagatgttgagcgccggcgcggcgccgttcatcttgaagctccagccgagcacgtagtggcggcagaagaggatgccggtcgccgaggagaagccgacgtaggcggtgtcatcaatgacggaggagatgttgacgattttggacagcaggggcttctttggccgcgccacctccagcggcgccatggtgacattgacctgcatggtctggccgtcgaagtccacccacacctgcatcggcctgcggctcaccaggctcatgttcttgaagtcgccggtgccgtcgtcgtagtacccggcgttgtcggcgtcgacggagttgaggccgttgacgtcgatcccgacatggttgccgctcatgtcgttgaactccgagttgaggatggtgtcgaactccacggcgaagaggtggttggtcgcgttgccgttgttggcggagttgacgagccccatgaactgccccggcagcgccgaggtgaggttcttgctcttggcgatgatgaacgccatgccgtggctgctcaggtcctcgaacgcgccgatgatgccgatgacgaaggccgtggagaaggactgcatcgccgtgctgttgggccccctctggaactggagcggcgacgggaagaaggcgtggcccttgagctggttcgtgccgttggtcagcatgagcagcccgttcgaggtcaccgttgccatgccgtcgaagctgaggttggcgccggtgaacccgttgaagacgaaccgctcgtcggtcgccgccgccgggcggaggcagccgaggccgaggaagaggagcaggacaaagaacggcatttctggtttgggaagcaccatgccctgcacttcgcctagtgctgagcttcaatcagtgcctcaccaaatgcccaagctttgctgcttctattgtgtcagtcaagtcacggccccggtgtttaactcaggttactctcagccacctgttcctttttccttctgttggtgcgtgtgaagcggaccaaatgtaaaacccagtagtctagatacggtctgggcgcgattgcaactttcagtctcgtacagattggtgatgtgtcgtgagaacgaggggagtaaaaattctcccctctctctcgagtaagatcaccaacccttcattcactcat
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| CDS seq | atggtgcttcccaaaccagaaatgccgttctttgtcctgctcctcttcctcggcctcggctgcctccgcccggcggcggcgaccgacgagcggttcgtcttcaacgggttcaccggcgccaacctcagcttcgacggcatggcaacggtgacctcgaacgggctgctcatgctgaccaacggcacgaaccagctcaagggccacgccttcttcccgtcgccgctccagttccagagggggcccaacagcacggcgatgcagtccttctccacggccttcgtcatcggcatcatcggcgcgttcgaggacctgagcagccacggcatggcgttcatcatcgccaagagcaagaacctcacctcggcgctgccggggcagttcatggggctcgtcaactccgccaacaacggcaacgcgaccaaccacctcttcgccgtggagttcgacaccatcctcaactcggagttcaacgacatgagcggcaaccatgtcgggatcgacgtcaacggcctcaactccgtcgacgccgacaacgccgggtactacgacgacggcaccggcgacttcaagaacatgagcctggtgagccgcaggccgatgcaggtgtgggtggacttcgacggccagaccatgcaggtcaatgtcaccatggcgccgctggaggtggcgcggccaaagaagcccctgctgtccaaaatcgtcaacatctcctccgtcattgatgacaccgcctacgtcggcttctcctcggcgaccggcatcctcttctgccgccactacgtgctcggctggagcttcaagatgaacggcgccgcgccggcgctcaacatctcatccctgccctccctgccggtcacgttccccaagccgcggtccaagacgcttgagatcgtgctgccgatagcctcggcggtgctcgtcttcgcggtggccgccgccgtgttcgtgttcatgcggcggcggcgcatgttctcggagctcaaggaggagtgggaggtgacgttcgggcctcacaggttctcgtacaaggacctgttccacgccaccgacgggttcagcgacaagcggctcctcggcatcggcgggttcgggcgcgtgtaccgtggcgtgctcccgtcgtccaaggcggaggtcgccgtgaagaaggtggcgcacgggtcgaggcaggggatgagggagttcgtggcggaggtggtcagcatcggccggctccggcaccggaacctcgtgcagctgctcggctactgccggcgcaagggcgagctcctgctggtgtacgactacatgcccaacggcagcctggacaagcagctgtacgaccagggcaagatcaccctgagatgggcgcagaggttccgcatcatcaggggcgtcgcgtccgggctgctctacctccacgaggactgggagcaggtggtggtgcacagggacatcaaggccagcaacgtgctgctcgacgccgacatgaacggccggctcggcgacttcggcctggcgcggctgtacgaccacggcaccgacccgcacacgacgcacgtggtgggcaccatgggctacctggcgccggagctggggcacaccggcaaggcgtccaaggcgtcggacgtgttcgcgttcggggccttcatgctggaggtggcgtgcgggcggaagcccgtggcgcaggacgcgcgcgacaaccgcgtcgtgctcgtcgactgggtgctcgaccggtggcgcgccggggcgatcacggacacggtggacccgcgcctgcacggcgacttcgtcgagagcgaggcgagcctcgtgctgcggctgggcctgctgtgctcgcacccgctgcccggcgcacggccggggacgaggcagcttgtgcagtacctggaaggcgacgtgccgctgccggagctgtcgccgacgtaccagagcttcaacatgctggcgctcatgcaggaccaggggttcgacccctacgtcatgtcctacccgatgacatccaccagcgcaggcaccttctctgacctctctggaggtagatga
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| Protein seq | MVLPKPEMPFFVLLLFLGLGCLRPAAATDERFVFNGFTGANLSFDGMATVTSNGLLMLTNGTNQLKGHAFFPSPLQFQRGPNSTAMQSFSTAFVIGIIGAFEDLSSHGMAFIIAKSKNLTSALPGQFMGLVNSANNGNATNHLFAVEFDTILNSEFNDMSGNHVGIDVNGLNSVDADNAGYYDDGTGDFKNMSLVSRRPMQVWVDFDGQTMQVNVTMAPLEVARPKKPLLSKIVNISSVIDDTAYVGFSSATGILFCRHYVLGWSFKMNGAAPALNISSLPSLPVTFPKPRSKTLEIVLPIASAVLVFAVAAAVFVFMRRRRMFSELKEEWEVTFGPHRFSYKDLFHATDGFSDKRLLGIGGFGRVYRGVLPSSKAEVAVKKVAHGSRQGMREFVAEVVSIGRLRHRNLVQLLGYCRRKGELLLVYDYMPNGSLDKQLYDQGKITLRWAQRFRIIRGVASGLLYLHEDWEQVVVHRDIKASNVLLDADMNGRLGDFGLARLYDHGTDPHTTHVVGTMGYLAPELGHTGKASKASDVFAFGAFMLEVACGRKPVAQDARDNRVVLVDWVLDRWRAGAITDTVDPRLHGDFVESEASLVLRLGLLCSHPLPGARPGTRQLVQYLEGDVPLPELSPTYQSFNMLALMQDQGFDPYVMSYPMTSTSAGTFSDLSGGR |
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| Function | L-type lectin-domain containing receptor kinase SIT2 [UniProtKB/Swiss-Prot:Q7XUN6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0021640 | OsKeNa_04g0021640.01 | Chr04 | 25238337 | 25240881 | - | NAM | ||
| CDS seq | atggtgcttcccaaaccagaaatgccgttctttgtcctgctcctcttcctcggcctcggctgcctccgcccggcggcggcgaccgacgagcggttcgtcttcaacgggttcaccggcgccaacctcagcttcgacggcatggcaacggtgacctcgaacgggctgctcatgctgaccaacggcacgaaccagctcaagggccacgccttcttcccgtcgccgctccagttccagagggggcccaacagcacggcgatgcagtccttctccacggccttcgtcatcggcatcatcggcgcgttcgaggacctgagcagccacggcatggcgttcatcatcgccaagagcaagaacctcacctcggcgctgccggggcagttcatggggctcgtcaactccgccaacaacggcaacgcgaccaaccacctcttcgccgtggagttcgacaccatcctcaactcggagttcaacgacatgagcggcaaccatgtcgggatcgacgtcaacggcctcaactccgtcgacgccgacaacgccgggtactacgacgacggcaccggcgacttcaagaacatgagcctggtgagccgcaggccgatgcaggtgtgggtggacttcgacggccagaccatgcaggtcaatgtcaccatggcgccgctggaggtggcgcggccaaagaagcccctgctgtccaaaatcgtcaacatctcctccgtcattgatgacaccgcctacgtcggcttctcctcggcgaccggcatcctcttctgccgccactacgtgctcggctggagcttcaagatgaacggcgccgcgccggcgctcaacatctcatccctgccctccctgccggtcacgttccccaagccgcggtccaagacgcttgagatcgtgctgccgatagcctcggcggtgctcgtcttcgcggtggccgccgccgtgttcgtgttcatgcggcggcggcgcatgttctcggagctcaaggaggagtgggaggtgacgttcgggcctcacaggttctcgtacaaggacctgttccacgccaccgacgggttcagcgacaagcggctcctcggcatcggcgggttcgggcgcgtgtaccgtggcgtgctcccgtcgtccaaggcggaggtcgccgtgaagaaggtggcgcacgggtcgaggcaggggatgagggagttcgtggcggaggtggtcagcatcggccggctccggcaccggaacctcgtgcagctgctcggctactgccggcgcaagggcgagctcctgctggtgtacgactacatgcccaacggcagcctggacaagcagctgtacgaccagggcaagatcaccctgagatgggcgcagaggttccgcatcatcaggggcgtcgcgtccgggctgctctacctccacgaggactgggagcaggtggtggtgcacagggacatcaaggccagcaacgtgctgctcgacgccgacatgaacggccggctcggcgacttcggcctggcgcggctgtacgaccacggcaccgacccgcacacgacgcacgtggtgggcaccatgggctacctggcgccggagctggggcacaccggcaaggcgtccaaggcgtcggacgtgttcgcgttcggggccttcatgctggaggtggcgtgcgggcggaagcccgtggcgcaggacgcgcgcgacaaccgcgtcgtgctcgtcgactgggtgctcgaccggtggcgcgccggggcgatcacggacacggtggacccgcgcctgcacggcgacttcgtcgagagcgaggcgagcctcgtgctgcggctgggcctgctgtgctcgcacccgctgcccggcgcacggccggggacgaggcagcttgtgcagtacctggaaggcgacgtgccgctgccggagctgtcgccgacgtaccagagcttcaacatgctggcgctcatgcaggaccaggggttcgacccctacgtcatgtcctacccgatgacatccaccagcgcaggcaccttctctgacctctctggaggtagatga
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| Protein seq | MVLPKPEMPFFVLLLFLGLGCLRPAAATDERFVFNGFTGANLSFDGMATVTSNGLLMLTNGTNQLKGHAFFPSPLQFQRGPNSTAMQSFSTAFVIGIIGAFEDLSSHGMAFIIAKSKNLTSALPGQFMGLVNSANNGNATNHLFAVEFDTILNSEFNDMSGNHVGIDVNGLNSVDADNAGYYDDGTGDFKNMSLVSRRPMQVWVDFDGQTMQVNVTMAPLEVARPKKPLLSKIVNISSVIDDTAYVGFSSATGILFCRHYVLGWSFKMNGAAPALNISSLPSLPVTFPKPRSKTLEIVLPIASAVLVFAVAAAVFVFMRRRRMFSELKEEWEVTFGPHRFSYKDLFHATDGFSDKRLLGIGGFGRVYRGVLPSSKAEVAVKKVAHGSRQGMREFVAEVVSIGRLRHRNLVQLLGYCRRKGELLLVYDYMPNGSLDKQLYDQGKITLRWAQRFRIIRGVASGLLYLHEDWEQVVVHRDIKASNVLLDADMNGRLGDFGLARLYDHGTDPHTTHVVGTMGYLAPELGHTGKASKASDVFAFGAFMLEVACGRKPVAQDARDNRVVLVDWVLDRWRAGAITDTVDPRLHGDFVESEASLVLRLGLLCSHPLPGARPGTRQLVQYLEGDVPLPELSPTYQSFNMLALMQDQGFDPYVMSYPMTSTSAGTFSDLSGGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.151433 | 4.625735 | 0.626385 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0531400 | RBH | 1.947435 | 1.977984 | 0.933378 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g44900 | RBH | 1.314383 | 1.327758 | 0.239800 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0531400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0020890 | RBH | 0.298586 | 20.082426 | 1.493533 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0026770 | RBH | 0.000000 | 0.513809 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0021370 | RBH | 0.496439 | 9.601368 | 2.730780 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0021110 | RBH | 0.069960 | 0.312435 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0021300 | RBH | 1.220371 | 9.493213 | 3.548559 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0417200 | RBH | 3.8747625 | 73.9902575 | 5.060507 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0020090 | RBH | 0.151694 | 0.596855 | 0.165163 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0417800 | RBH | 4.1583535 | 50.854502 | 1.9505575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0020600 | RBH | 0.090973 | 0.285675 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0020430 | RBH | 0.143340 | 13.635335 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0020540 | RBH | 2.781268 | 53.747246 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0020930 | RBH | 0.324391 | 1.724732 | 0.405141 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0021100 | RBH | 0.046391 | 5.159930 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G020370 | RBH | 0.0 | 2.175573 | 1.115420 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0020310 | RBH | 0.622724 | 13.822183 | 2.059242 |
