Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0018940 | OGI:04074630 | 13/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:23199921-23202746 | ||||||||
| Gene Symbol | PTR | ||||||||||
| DNA seq | tagagatgaagcccttgttttactctcttgtatatgaaactccgatatgtcttgctacaacaatgcttatccatgtttaaatcagatcttacatagctttgccacggacaaccatacgtacatgctatgatgctaaacacagcacacacgacggctaccttctcataacatctcgctactgcaaattactaggagggataaaatggatggaatccaacagatcatcactaccaaatcaccaggattgctatttagcgcacaccttttcatatgaaagttttcatatatttttttttcgattaaagttttttttggacgaaaatttttagaaaaaagtgtgtgctagtaacggacgtttgactaataatagcactataggcaaaatcacatctacgcaaaacttgactaatcctttggcacggtttgaccaacactacaggcgcggtatttttcaaggtgaatcgtgatccgccgatggctcgacgtcgacgacgacgcgtgggtcttgccggtatatgtacctgctcgcccagtagaggtagttgacgaagccaagcagcccgacggcggcgacgacccagtagaagaggtcgaggcggctggtgttgagggtggcgccctcgagccacccgccgccgccgccgccgccgtgccgcctcgtggccctgttcaccacctgcaccagcagcgtggcgagccacgacgagaggccgagctcgcaccagaacagcgccgacgcgatggacttcatgccacggggcgcctcgctgctgaagagctcgaggaggcccgggaacgacgtcacgtcggagacgccgagcaggaagaactgtggcgccagccagaacagcgacatctgccccgccgccgcggcgtcggcccgccgcttcctctccacgacggcggcgatggccgacgccaggatcacggcggcgaacccggcgccgacgcgctgcaggtgggtgacgccgctggcgtagcccgtgcgccgccgcaggagcggcacgaggaagcggtcgtacaccgggagcagcgccatctggaacgcgctggggatgatgaagagcgtcgccggcgagacgtggatcctccccagccgggtgttggtcaagccgccctgctgcacggtgaaggtgaagaggagcgggttcgacatgtagccgatcagggagctgatgaagacggggagcacgcggagcacggcctttgtctcctccacgttcttcgtgctgcagactgaccaggccccgtctttgcctccattgatgcaagctttgtcaaggaatctgccaagatgcatgcaaagacaaaattttagtattgcactctgccaagaggacaatgctcaattgccaatattttctgctttgtattcaaagtagtctagaaaaagtactcagtatttcgttgaacatacttcagactactgtttgtttgagaagctatttcagttacttcagtagagcctccttgctcagtgcttctttcttcctgtgcttcttccagcttctcaggaagttgaagcttcctgttcttgaatgcaaccacaagaacctgggatagatagatcagaatgcagtcaactaacatgcacaggatctcttttcttgagaattgatgttgacatcatgttttgacccaacaaggagcacaacctacctggagtatccgagttagcggacttccttcgggtacatggttgcggtacaaagggagaccagcagcaaccacaagcagcccaagcaggatcaggaacgcgcacaccccaaacccgacatcccaccctttgctgttctccagccaaactatgaggatcaatcctatgaaacccccaaaggagattccgaaggtgtaccagttgaagaagctggactgctggcgggactcggaggggtcttcatggtcgaactggtctgctccgaggggcggcatacaagcacgcatgaagccatcgccaaaagcgctgatgtacagcgctgcgtaaagtaggacggcattcctgccatggacttctctgcagctgcttgcctctgcttccgcgttgcaaggcggtggacggagagagggaaggtaagcttgcagtgcgagcaaaccgtagccctgcatatatgattgccaataattcgttagatggttgaatagaccaagaagcagattaccagaaaaaaatgccaatttctttattattggtaggtttgcgcacagtaattggcaacggagaattaaacaaaaatagtttcctttgatcatattaggcttgatgtagatagttgagtaaaccaaaaagcgaattaccaaaaattccaatggaccaaagaggagtattgttctagctcgagttatgtaagagtctgagaggaaagctcctaacagagcaaacccagatgtggcaccaagaacattagtgactgtagttgaagagcttgagattcccatatgcattgttccatagagataggtaaccatattcagcatgtttgggacattgactgtgcttgtcaccacagtcagaactgtaagagatcgaaacatgtataaaatgcttcagcgatttaaagaaagaaaagaagcttgaaatggaaagagtaactcgtcacatgtctgcatattactagtaactagacaaaatcacataattcaggaaacatggataaagcaagtcaactggcaatcacttacaatatacaaaccatgctgctctgactcctccatgcacctttctattaataggatttcccctccagtccaaaaagcctccgactgccatggtttttctgatgagttcaaatatttctgatgagttcaaatatttctctcttgattact
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| CDS seq | atggcagtcggaggctttttggactggaggggaaatcctattaatagaaaggtgcatggaggagtcagagcagcatggtttgtatattttctgactgtggtgacaagcacagtcaatgtcccaaacatgctgaatatggttacctatctctatggaacaatgcatatgggaatctcaagctcttcaactacagtcactaatgttcttggtgccacatctgggtttgctctgttaggagctttcctctcagactcttacataactcgagctagaacaatactcctctttggtccattggaatttttgggctacggtttgctcgcactgcaagcttaccttccctctctccgtccaccgccttgcaacgcggaagcagaggcaagcagctgcagagaagtccatggcaggaatgccgtcctactttacgcagcgctgtacatcagcgcttttggcgatggcttcatgcgtgcttgtatgccgcccctcggagcagaccagttcgaccatgaagacccctccgagtcccgccagcagtccagcttcttcaactggtacaccttcggaatctcctttgggggtttcataggattgatcctcatagtttggctggagaacagcaaagggtgggatgtcgggtttggggtgtgcgcgttcctgatcctgcttgggctgcttgtggttgctgctggtctccctttgtaccgcaaccatgtacccgaaggaagtccgctaactcggatactccaggttcttgtggttgcattcaagaacaggaagcttcaacttcctgagaagctggaagaagcacaggaagaaagaagcactgagcaaggaggctctactgaagtaactgaaatagcttctcaaacaaacagtagtctgaaattccttgacaaagcttgcatcaatggaggcaaagacggggcctggtcagtctgcagcacgaagaacgtggaggagacaaaggccgtgctccgcgtgctccccgtcttcatcagctccctgatcggctacatgtcgaacccgctcctcttcaccttcaccgtgcagcagggcggcttgaccaacacccggctggggaggatccacgtctcgccggcgacgctcttcatcatccccagcgcgttccagatggcgctgctcccggtgtacgaccgcttcctcgtgccgctcctgcggcggcgcacgggctacgccagcggcgtcacccacctgcagcgcgtcggcgccgggttcgccgccgtgatcctggcgtcggccatcgccgccgtcgtggagaggaagcggcgggccgacgccgcggcggcggggcagatgtcgctgttctggctggcgccacagttcttcctgctcggcgtctccgacgtgacgtcgttcccgggcctcctcgagctcttcagcagcgaggcgccccgtggcatgaagtccatcgcgtcggcgctgttctggtgcgagctcggcctctcgtcgtggctcgccacgctgctggtgcaggtggtgaacagggccacgaggcggcacggcggcggcggcggcggcgggtggctcgagggcgccaccctcaacaccagccgcctcgacctcttctactgggtcgtcgccgccgtcgggctgcttggcttcgtcaactacctctactgggcgagcaggtacatataccggcaagacccacgcgtcgtcgtcgacgtcgagccatcggcggatcacgattcaccttga
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| Protein seq | MAVGGFLDWRGNPINRKVHGGVRAAWFVYFLTVVTSTVNVPNMLNMVTYLYGTMHMGISSSSTTVTNVLGATSGFALLGAFLSDSYITRARTILLFGPLEFLGYGLLALQAYLPSLRPPPCNAEAEASSCREVHGRNAVLLYAALYISAFGDGFMRACMPPLGADQFDHEDPSESRQQSSFFNWYTFGISFGGFIGLILIVWLENSKGWDVGFGVCAFLILLGLLVVAAGLPLYRNHVPEGSPLTRILQVLVVAFKNRKLQLPEKLEEAQEERSTEQGGSTEVTEIASQTNSSLKFLDKACINGGKDGAWSVCSTKNVEETKAVLRVLPVFISSLIGYMSNPLLFTFTVQQGGLTNTRLGRIHVSPATLFIIPSAFQMALLPVYDRFLVPLLRRRTGYASGVTHLQRVGAGFAAVILASAIAAVVERKRRADAAAAGQMSLFWLAPQFFLLGVSDVTSFPGLLELFSSEAPRGMKSIASALFWCELGLSSWLATLLVQVVNRATRRHGGGGGGGWLEGATLNTSRLDLFYWVVAAVGLLGFVNYLYWASRYIYRQDPRVVVDVEPSADHDSP |
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| Function | Protein NRT1/ PTR FAMILY 4.3 [UniProtKB/Swiss-Prot:Q93VV5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0018940 | OsKeNa_04g0018940.01 | Chr04 | 23199921 | 23202746 | - | NAM | ||
| CDS seq | atggcagtcggaggctttttggactggaggggaaatcctattaatagaaaggtgcatggaggagtcagagcagcatggtttgtatattttctgactgtggtgacaagcacagtcaatgtcccaaacatgctgaatatggttacctatctctatggaacaatgcatatgggaatctcaagctcttcaactacagtcactaatgttcttggtgccacatctgggtttgctctgttaggagctttcctctcagactcttacataactcgagctagaacaatactcctctttggtccattggaatttttgggctacggtttgctcgcactgcaagcttaccttccctctctccgtccaccgccttgcaacgcggaagcagaggcaagcagctgcagagaagtccatggcaggaatgccgtcctactttacgcagcgctgtacatcagcgcttttggcgatggcttcatgcgtgcttgtatgccgcccctcggagcagaccagttcgaccatgaagacccctccgagtcccgccagcagtccagcttcttcaactggtacaccttcggaatctcctttgggggtttcataggattgatcctcatagtttggctggagaacagcaaagggtgggatgtcgggtttggggtgtgcgcgttcctgatcctgcttgggctgcttgtggttgctgctggtctccctttgtaccgcaaccatgtacccgaaggaagtccgctaactcggatactccaggttcttgtggttgcattcaagaacaggaagcttcaacttcctgagaagctggaagaagcacaggaagaaagaagcactgagcaaggaggctctactgaagtaactgaaatagcttctcaaacaaacagtagtctgaaattccttgacaaagcttgcatcaatggaggcaaagacggggcctggtcagtctgcagcacgaagaacgtggaggagacaaaggccgtgctccgcgtgctccccgtcttcatcagctccctgatcggctacatgtcgaacccgctcctcttcaccttcaccgtgcagcagggcggcttgaccaacacccggctggggaggatccacgtctcgccggcgacgctcttcatcatccccagcgcgttccagatggcgctgctcccggtgtacgaccgcttcctcgtgccgctcctgcggcggcgcacgggctacgccagcggcgtcacccacctgcagcgcgtcggcgccgggttcgccgccgtgatcctggcgtcggccatcgccgccgtcgtggagaggaagcggcgggccgacgccgcggcggcggggcagatgtcgctgttctggctggcgccacagttcttcctgctcggcgtctccgacgtgacgtcgttcccgggcctcctcgagctcttcagcagcgaggcgccccgtggcatgaagtccatcgcgtcggcgctgttctggtgcgagctcggcctctcgtcgtggctcgccacgctgctggtgcaggtggtgaacagggccacgaggcggcacggcggcggcggcggcggcgggtggctcgagggcgccaccctcaacaccagccgcctcgacctcttctactgggtcgtcgccgccgtcgggctgcttggcttcgtcaactacctctactgggcgagcaggtacatataccggcaagacccacgcgtcgtcgtcgacgtcgagccatcggcggatcacgattcaccttga
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| Protein seq | MAVGGFLDWRGNPINRKVHGGVRAAWFVYFLTVVTSTVNVPNMLNMVTYLYGTMHMGISSSSTTVTNVLGATSGFALLGAFLSDSYITRARTILLFGPLEFLGYGLLALQAYLPSLRPPPCNAEAEASSCREVHGRNAVLLYAALYISAFGDGFMRACMPPLGADQFDHEDPSESRQQSSFFNWYTFGISFGGFIGLILIVWLENSKGWDVGFGVCAFLILLGLLVVAAGLPLYRNHVPEGSPLTRILQVLVVAFKNRKLQLPEKLEEAQEERSTEQGGSTEVTEIASQTNSSLKFLDKACINGGKDGAWSVCSTKNVEETKAVLRVLPVFISSLIGYMSNPLLFTFTVQQGGLTNTRLGRIHVSPATLFIIPSAFQMALLPVYDRFLVPLLRRRTGYASGVTHLQRVGAGFAAVILASAIAAVVERKRRADAAAAGQMSLFWLAPQFFLLGVSDVTSFPGLLELFSSEAPRGMKSIASALFWCELGLSSWLATLLVQVVNRATRRHGGGGGGGWLEGATLNTSRLDLFYWVVAAVGLLGFVNYLYWASRYIYRQDPRVVVDVEPSADHDSP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.026084 | 0.964924 | 0.429396 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0491500 | SBH | 0.220163 | 0.000000 | 0.623486 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g41400 | RBH | 0.0 | 0.044105 | 0.088274 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0491500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0018160 | RBH | 0.0 | 1.166167 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0018950 | RBH | 0.000000 | 1.176281 | 0.358577 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018650 | RBH | 0.0 | 0.000000 | 0.554377 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0018360 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0018560 | RBH | 1.151093 | 7.849608 | 4.446796 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0383700 | RBH | 9.0941355 | 23.128197 | 28.875256 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017350 | RBH | 0.000000 | 0.962984 | 0.395520 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0338900 | SBH | 7.76006 | 10.5775585 | 1.5837065 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0017850 | RBH | 0.062070 | 0.064055 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0017690 | RBH | 0.100468 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0017770 | RBH | 0.000000 | 0.559480 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018190 | RBH | 0.000000 | 0.131494 | 0.470778 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018350 | RBH | 0.000000 | 0.706599 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G017650 | RBH | 0.0 | 0.294610 | 0.267948 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017590 | RBH | 0.000000 | 4.372428 | 1.183992 |
