Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0018860 | OGI:04074540 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:23166047-23169272 | ||||||||
| Gene Symbol | RLCK152, OsRLCK152 | ||||||||||
| DNA seq | aacgcgatcaatcgatagatttccgtgcaatacataagcaggcgactactttccgcagcttagccgccctctcgagctcgtgcaaacctaccccagaggagttaattatagatagttaactcgtgctgcttgctagctgatcatcagttgatgccggcgatggggttgtgggagagcgtgaggagcttgttcggggagggaggcaacggctgcctacctcggattgggaagaaagagtccgaggatctttactcttatccagtggatcatggtatgtaattttgtttttgtctctctgtgtgtgttgttgttgttgtttctttctccattttgttgacaattggaccacgttgcttttggtgctgaattctcaactgtttctctactccggttagctgtaatttgattagctcaattctgggattctcatcgtgtctgtcagcaggtagacaggccctcgatatattcttttgcgttcttgtgttctttctagctctgctttgataagtgatagtcgacagtgattaaacaggagacaatcgaccatttctactagcatgcgtgaaggattaacagcgaaatctttgcttttttccactgtgttcagataaacggaaaggagcggaccgtgcggccgcggaggaggtggtgacagtggaggtgccggaggtgcccgtgcgcgagctgaacgagatcaccaactccttctcgaacgagaacctcatcgggcagggctcctacgcgaaggtgtacagggtcctcatgcgcggcgcgaggcccgccgtcgtcaagaagctcgagaagccgtccaagcacgcgtccaacgtcgtcttcctcaagcaggtgcgtagctcttctcggtgctttttaccaatgctcactctgctactacttaccatatatatctgcagctgtcggtggcgtcgcggctgaagcacgagaacttcgtcaggctgttggggtacacgatcagcggcgacctccgcgtgctggtctacgagtacgccgccatgggcaccctccacgacgtcctgcacggtacaatctctacttctaaggatcagtcactccctctcatttttttttacaactacgcttgccgaactgctaaacggtgtgatcagcctgggactgaaccattggtgtgtcgtcgtgtgcagggccgagggacggacaggggtggggcggggaggcgaaggcggtggtgagctgggagcagcgggtgcggatcgcgctggacgcggcgcgcgggctggagtacctgcacgagaaggtgcagccggcggtgacgcacaaggacgtgcgttccaccaacgtgctgctgttcgaggggttcagggccaagatcgccgactacaacatgttcagccaggccgccgacatggctcgcctcaaccgctccactcacaccctcggctccttcggataccaggcgccggagtacgtgcacgcacgcacacacacaagcccagctgatctctgtctggccatggctgatcgatctcgtcatggctttcttgttgttggattgggtcgtcgaacgattttgctgaaattttcgttggtttggggatgttccaggtatgccatgactggtcagatgaacgataagagcgacgtttacagttttgggattgttctgctggagctcttgacggggaggaagccgctggaccggacgttgccgcagggtcagagaagcctggttaactgggtaagcatttttcttttctggttttcacatttccttttctttgtcttaatcactgcatttccctctcagttgtaccagctaacccaaagaacattaatatattggtcacctacctcgtctattttcatccttggtcttcctttctcacctaagaagcagctgaaaagctttttagtgaaagatttatctgatagctaagctgtggaataccgaacacgtacttatcaattatcaaactgcaattcgtctgccaaatttcaataaacctcaaaccagaagcttctagccccttgattaaaattttatggaggtcactttccaaaggcgataagacagtaggagatgcatttgtgctatgacgcaagaaacaaattgcatcagtttctttcctaaataaacaacacaatccaacgaaaacaaaaacaatggcagtacgagcatagtactagtatatcttgaaacaaagatgatgctatcacacaatgttcagactctgacctggcgtatctcctgccccatttgatatgctaggcaactccaattttgactgaagacagggtccaggactgcatcgaccccaatcttggcgacaagtatcctcctaccggagctctcaaggtttctctcttaactattcacctgcattgcatttttgcacccaaccattaccatctctatctatgtatctctagtaggtttctacttctaaccgtcagggtgtggcaatgtcacaatgcagctggggagaatcgcggtgcagtgcctgcagtacgaccctacgttccggccatcgatgggcaccgttgcccgcgtcatcaactacgccgtcgtgcgagaccagcaaggcgtggtctgatgatccacgaggaTttttttttttttttgcacttgttcattttgatttgttcgtgtgaatcaaccgtgtatatgccttgcgttgtgcaggctagttagacatgcaagagatacaattcttgcagtaatagttgaagagagactatatccaaaaagcctctggttgatataaactggtaccggtaaaactttcccaaagcttaggagtccatagggggaaaaaaacagaacagaaggccttattaaggccatgtgtgcaagctagttagacgtgcaagagtatgctagtagtacagtaaatcgctcaattttggatggagttgtttctcttcttttttttttctcctgaagatgcatcatctaaggaaaaaaaatgtactgagcagaacactgagcttgttaggaaaaaaacagttcagtagtataaatggtacgaatgttcagtacaattgtgtcccgttaacatacatcgattttgccaaaagaacaaagggaactttgtatagtatgagtgtatttgtatagggtcggaagtcttgccatccgaatgtttgccccaaaaatgttggggtaaaaaaaagagaagagaaaataggataacctgaaacggagctatgaatatttcgtttcattctatagtttacaactgtttatttt
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| CDS seq | atgccggcgatggggttgtgggagagcgtgaggagcttgttcggggagggaggcaacggctgcctacctcggattgggaagaaagagtccgaggatctttactcttatccagtggatcatgataaacggaaaggagcggaccgtgcggccgcggaggaggtggtgacagtggaggtgccggaggtgcccgtgcgcgagctgaacgagatcaccaactccttctcgaacgagaacctcatcgggcagggctcctacgcgaaggtgtacagggtcctcatgcgcggcgcgaggcccgccgtcgtcaagaagctcgagaagccgtccaagcacgcgtccaacgtcgtcttcctcaagcaggtgcctgtcggtggcgtcgcggctgaagcacgagaacttcgtcaggctgttggggtacacgatcagcggcgacctccgcgtgctggtctacgagtacgccgccatgggcaccctccacgacgtcctgcacggtacaatctctacttc
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| Protein seq | MPAMGLWESVRSLFGEGGNGCLPRIGKKESEDLYSYPVDHDKRKGADRAAAEEVVTVEVPEVPVRELNEITNSFSNENLIGQGSYAKVYRVLMRGARPAVVKKLEKPSKHASNVVFLKQVPVGGVAAEARELRQAVGVHDQRRPPRAGLRVRRHGHPPRRPARYNLYF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0018860 | OsKeNa_04g0018860.01 | Chr04 | 23166061 | 23169272 | + | NAM | ||
| CDS seq | atgccggcgatggggttgtgggagagcgtgaggagcttgttcggggagggaggcaacggctgcctacctcggattgggaagaaagagtccgaggatctttactcttatccagtggatcatgataaacggaaaggagcggaccgtgcggccgcggaggaggtggtgacagtggaggtgccggaggtgcccgtgcgcgagctgaacgagatcaccaactccttctcgaacgagaacctcatcgggcagggctcctacgcgaaggtgtacagggtcctcatgcgcggcgcgaggcccgccgtcgtcaagaagctcgagaagccgtccaagcacgcgtccaacgtcgtcttcctcaagcaggtgcctgtcggtggcgtcgcggctgaagcacgagaacttcgtcaggctgttggggtacacgatcagcggcgacctccgcgtgctggtctacgagtacgccgccatgggcaccctccacgacgtcctgcacggtacaatctctacttc
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| Protein seq | MPAMGLWESVRSLFGEGGNGCLPRIGKKESEDLYSYPVDHDKRKGADRAAAEEVVTVEVPEVPVRELNEITNSFSNENLIGQGSYAKVYRVLMRGARPAVVKKLEKPSKHASNVVFLKQVPVGGVAAEARELRQAVGVHDQRRPPRAGLRVRRHGHPPRRPARYNLYF |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0018860 | OsKeNa_04g0018860.02 | Chr04 | 23166047 | 23168783 | + | IsoSeq | ||
| CDS seq | cgcgatcaatcgatagatttccgtgcaatacataagcaggcgactactttccgcagcttagccgccctctcgagctcgtgcaaacctaccccagaggagttaattatagat |
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| Protein seq | RDQSIDFRAIHKQATTFRSLAALSSSCKPTPEELIID |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr04 | 23166958 | 23167486 | + | OsKeNa_04g0018860.01 | OsKeNa_04g0018860.02,OsKeNa_04g0018860.01 | All |
| A5 | Chr04 | 23166889 | 23166958 | + | OsKeNa_04g0018860.01 | OsKeNa_04g0018860.02,OsKeNa_04g0018860.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.389399 | 0.000000 | 1.733259 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0490500 | RBH | 9.981484 | 9.963483 | 2.545424 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g41310 | RBH | 5.703573 | 5.581232 | 0.605319 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0490500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0018080 | RBH | 2.556245 | 1.302300 | 2.967591 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0043220 | SBH | 0.260519 | 3.604181 | 0.934887 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018570 | RBH | 7.290354 | 1.087357 | 6.287111 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0018280 | RBH | 0.939593 | 0.028482 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0018490 | RBH | 25.518887 | 9.136275 | 14.154984 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0508300 | SBH | 0 | 0.081849 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017280 | RBH | 2.476221 | 0.085728 | 0.284321 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0382600 | RBH | 5.972988 | 27.034124 | 0.0241945 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0017780 | RBH | 0.987383 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0017620 | RBH | 3.340114 | 3.244355 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0017690 | RBH | 11.368360 | 11.383584 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018120 | RBH | 2.577147 | 0.000000 | 1.891247 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018280 | RBH | 1.888907 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G017570 | RBH | 3.310441 | 0.000000 | 1.870836 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017510 | RBH | 2.650104 | 0.000000 | 5.994921 |
