Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0018740 | OGI:04074220 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:23052892-23056009 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagagctgctcaacaaatggttgaatagcttacaggcatatttcataaaataacactgtcaaatttaataggtgagtgtctacatattacagcagtcttgagattacttgctgatgctgatactgtgaaagaactaaatgaatcccctaagtcaacctgtggttctatattcttgccataaccaacaacaataacaacaaaggtaaatagaaatatttgagtggtatatgaaagaagtagaccaacctcatgacatatgccatagcacaactggagggcttcgtcccacttttttacttcaactaatccctttatgaggcaaacaaagacacttaactcaggtacaaagcctctccttgtcatttcactatacaatcgaaatgcttcctcaacttgagatgctaaacaaagtgcctggatcaatgaagcgtacatgtcattgtcagtttttacagatgacggaacttccatcatctctttgtgcaactccatagctatctccagcctgccagctttggagaaacaatcgatcagcattccataaacaggtgcaattggtactgtgccatatgattccatctcctccagaatacccagagaagcgataaagctcttgctgaaaccttgaattgcacaacggtatccttgtaagtactttggccagtaagtctgcttcatttcaccaagcagtaaacgagccttatccaaaaggccagcagcacacaagtggtttatcagaactctgtacgtaacataattgggagaacatccttttctgctcatttgtgtaaaaaggtcaagactcagatcaatcttgccagctttgcctaatccatctattagagcagtgtaagttacaacattcggactgcatcctttctcttccatcaatgacagaagctttagtgccttctcactttcacctatcctacaaagaccatcaatcatagctgtgtacgtaacaacattaggagtacaagaatcctttaacatctgagagagaactttcattgcaagatcaagtcttccatccttgaacatcctgtcaatcaacgaggtgtacgtatgtacactgggaaggtacccacactttgtcatctgcagaaatacctcctgagcactgtcaatttttccagctttgcaaaagccatcaataagagcatcgtacacaatgtgattgggctcgcaaccagaagataacatagcatctagtaattcatgagcatggtccactttgtgagctttgcataaaccatctactagtgcaccatatgtcacaacatttggagcaagtgtgtgtctgtcctcacatggaaagtaaaaatcagaatcggcgctatcagaagttccaattaatttggcatagacttcaaaagccttactgatgttgcctgctttacagagaccatctaccaatgcaccataagtaacatcatttggacgacagccagcatcaaccattcggtgaaaaatatcattagcctgaggtacctgcttagctttgaggtaagcatgaataagtgcagtatatgtcaccacagttggggagcaacccacactcctcatctcctcaaacaaccactgggcttgttcaatgagtccagctttacaaaagctgtcaatcaaaattgtgtatgtatacacatcaggagttacaccgaccatcttcatctcttggaacagaaggaaagctttctctaccttagtagcatggcagagaaaagtgatcaccttagagtatgtacttgtatcagggacaaaacctttcctcatcatctcctttatgagctgaaatgccttgtcaaacttcccgacaccacaaaggcatcgagcaaaattggcaacgttaaccttattaagaacacaattagcagccagcatctctccataaattttctcagctaaatccagcaaatcagggcttggtaatttctcctgaccacatatacttccaataaaaatattgtacacaacataaccaggagggcaaccacaagtagtcatcctatttaaaagtttataggcatacgcataatccttttcattgcaataactatgcacaagggaattaaacaaggatggatttggattgcagccctcagtcatcatcatattaatgatcctcttgcaccagccaagctgtttctttttcaaaaatcctgagagcaacgtcctatatgtgaccacatttggaatacatgagttgcatcgcatcctatggaggaatgacatggcctcgtcaaaatacgatgcctccatcagcccgctgatcatatgtgtgcataatactgtatcaagcttgaaatcctccctctctatcatgtctagtgcatcagcccaccgcccctctttgcacagagcgtgcgcaaagcacccaacggtgaaccggtccatgcagaaccccgactcggacatctccttctgaacccggaaccccaagtccacctgccccgcgctcgagagcacctggaccagtgcattgtaggtcaccttagacggcctgtacccaaagtccttcagcctcccgagctcctccagcgcctcgttccacatccctccgcggcagcaccgccgcactagcacattgagcaatctgccgagcacctcgcggtcctcctccccaatctccctaagcagcctctcggcatccctggcgcggccgtcgaaacccaacgcatccgcaagggcgtcgtagcatgcgcccgtgtggctgtacccaacctgccgctcggcccagaggaagaacctcgcgcagagctccggggcgtcgcgcaccgccccgagcaccgccaccacgacggagtcggtcaggaacccgcggcaccgccgcaggacgcgctccgccttgccgtcgaagtcggcgccgaatgcccggatcgccttggagatcagcacggcctccggtggcgggagggcaccggccgcggcggcggcggcgggctcccgaagaaactcgaagtctctggggccgaggcgagaccggggtggcggttgcggcggcgcgggtggctcgacgaggccgagcagggggtcctcggagtcgccggcggcgtgggagcaggtgcggcgcagggaggcgcgtagtgtcgctaccgccgccgcgcggcggcggatcat
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| CDS seq | atgatccgccgccgcgcggcggcggtagcgacactacgcgcctccctgcgccgcacctgctcccacgccgccggcgactccgaggaccccctgctcggcctcgtcgagccacccgcgccgccgcaaccgccaccccggtctcgcctcggccccagagacttcgagtttcttcgggagcccgccgccgccgccgcggccggtgccctcccgccaccggaggccgtgctgatctccaaggcgatccgggcattcggcgccgacttcgacggcaaggcggagcgcgtcctgcggcggtgccgcgggttcctgaccgactccgtcgtggtggcggtgctcggggcggtgcgcgacgccccggagctctgcgcgaggttcttcctctgggccgagcggcaggttgggtacagccacacgggcgcatgctacgacgcccttgcggatgcgttgggtttcgacggccgcgccagggatgccgagaggctgcttagggagattggggaggaggaccgcgaggtgctcggcagattgctcaatgtgctagtgcggcggtgctgccgcggagggatgtggaacgaggcgctggaggagctcgggaggctgaaggactttgggtacaggccgtctaaggtgacctacaatgcactggtccaggtgctctcgagcgcggggcaggtggacttggggttccgggttcagaaggagatgtccgagtcggggttctgcatggaccggttcaccgttgggtgctttgcgcacgctctgtgcaaagaggggcggtgggctgatgcactagacatgatagagagggaggatttcaagcttgatacagtattatgcacacatatgatcagcgggctgatggaggcatcgtattttgacgaggccatgtcattcctccataggatgcgatgcaactcatgtattccaaatgtggtcacatataggacgttgctctcaggatttttgaaaaagaaacagcttggctggtgcaagaggatcattaatatgatgatgactgagggctgcaatccaaatccatccttgtttaattcccttgtgcatagttattgcaatgaaaaggattatgcgtatgcctataaacttttaaataggatgactacttgtggttgccctcctggttatgttgtgtacaatatttttattggaagtatatgtggtcaggagaaattaccaagccctgatttgctggatttagctgagaaaatttatggagagatgctggctgctaattgtgttcttaataaggttaacgttgccaattttgctcgatgcctttgtggtgtcgggaagtttgacaaggcatttcagctcataaaggagatgatgaggaaaggttttgtccctgatacaagtacatactctaaggtgatcacttttctctgccatgctactaaggtagagaaagctttccttctgttccaagagatgaagatggtcggtgtaactcctgatgtgtatacatacacaattttgattgacagcttttgtaaagctggactcattgaacaagcccagtggttgtttgaggagatgaggagtgtgggttgctccccaactgtggtgacatatactgcacttattcatgcttacctcaaagctaagcaggtacctcaggctaatgatatttttcaccgaatggttgatgctggctgtcgtccaaatgatgttacttatggtgcattggtagatggtctctgtaaagcaggcaacatcagtaaggcttttgaagtctatgccaaattaattggaacttctgatagcgccgattctgatttttactttccatgtgaggacagacacacacttgctccaaatgttgtgacatatggtgcactagtagatggtttatgcaaagctcacaaagtggaccatgctcatgaattactagatgctatgttatcttctggttgcgagcccaatcacattgtgtacgatgctcttattgatggcttttgcaaagctggaaaaattgacagtgctcaggaggtatttctgcagatgacaaagtgtgggtaccttcccagtgtacatacgtacacctcgttgattgacaggatgttcaaggatggaagacttgatcttgcaatgaaagttctctctcagatgttaaaggattcttgtactcctaatgttgttacgtacacagctatgattgatggtctttgtaggataggtgaaagtgagaaggcactaaagcttctgtcattgatggaagagaaaggatgcagtccgaatgttgtaacttacactgctctaatagatggattaggcaaagctggcaagattgatctgagtcttgacctttttacacaaatgagcagaaaaggatgttctcccaattatgttacgtacagagttctgataaaccacttgtgtgctgctggccttttggataaggctcgtttactgcttggtgaaatgaagcagacttactggccaaagtacttacaaggataccgttgtgcaattcaaggtttcagcaagagctttatcgcttctctgggtattctggaggagatggaatcatatggcacagtaccaattgcacctgtttatggaatgctgatcgattgtttctccaaagctggcaggctggagatagctatggagttgcacaaagagatgatggaagttccgtcatctgtaaaaactgacaatgacatgtacgcttcattgatccaggcactttgtttagcatctcaagttgaggaagcatttcgattgtatagtgaaatgacaaggagaggctttgtacctgagttaagtgtctttgtttgcctcataaagggattagttgaagtaaaaaagtgggacgaagccctccagttgtgctatggcatatgtcatgaggttggtctacttctttcatataccactcaaatatttctatttacctttgttgttattgttgttggttatggcaagaatatagaaccacaggttgacttaggggattcatttagttctttcacagtatcagcatcagcaactattcaaccatttgttgagcagctctag
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| Protein seq | MIRRRAAAVATLRASLRRTCSHAAGDSEDPLLGLVEPPAPPQPPPRSRLGPRDFEFLREPAAAAAAGALPPPEAVLISKAIRAFGADFDGKAERVLRRCRGFLTDSVVVAVLGAVRDAPELCARFFLWAERQVGYSHTGACYDALADALGFDGRARDAERLLREIGEEDREVLGRLLNVLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEVGLLLSYTTQIFLFTFVVIVVGYGKNIEPQVDLGDSFSSFTVSASATIQPFVEQL |
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| Function | Pentatricopeptide repeat-containing protein At1g06710, mitochondrial [UniProtKB/Swiss-Prot:Q9M9X9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0018740 | OsKeNa_04g0018740.01 | Chr04 | 23052892 | 23056009 | - | NAM | ||
| CDS seq | atgatccgccgccgcgcggcggcggtagcgacactacgcgcctccctgcgccgcacctgctcccacgccgccggcgactccgaggaccccctgctcggcctcgtcgagccacccgcgccgccgcaaccgccaccccggtctcgcctcggccccagagacttcgagtttcttcgggagcccgccgccgccgccgcggccggtgccctcccgccaccggaggccgtgctgatctccaaggcgatccgggcattcggcgccgacttcgacggcaaggcggagcgcgtcctgcggcggtgccgcgggttcctgaccgactccgtcgtggtggcggtgctcggggcggtgcgcgacgccccggagctctgcgcgaggttcttcctctgggccgagcggcaggttgggtacagccacacgggcgcatgctacgacgcccttgcggatgcgttgggtttcgacggccgcgccagggatgccgagaggctgcttagggagattggggaggaggaccgcgaggtgctcggcagattgctcaatgtgctagtgcggcggtgctgccgcggagggatgtggaacgaggcgctggaggagctcgggaggctgaaggactttgggtacaggccgtctaaggtgacctacaatgcactggtccaggtgctctcgagcgcggggcaggtggacttggggttccgggttcagaaggagatgtccgagtcggggttctgcatggaccggttcaccgttgggtgctttgcgcacgctctgtgcaaagaggggcggtgggctgatgcactagacatgatagagagggaggatttcaagcttgatacagtattatgcacacatatgatcagcgggctgatggaggcatcgtattttgacgaggccatgtcattcctccataggatgcgatgcaactcatgtattccaaatgtggtcacatataggacgttgctctcaggatttttgaaaaagaaacagcttggctggtgcaagaggatcattaatatgatgatgactgagggctgcaatccaaatccatccttgtttaattcccttgtgcatagttattgcaatgaaaaggattatgcgtatgcctataaacttttaaataggatgactacttgtggttgccctcctggttatgttgtgtacaatatttttattggaagtatatgtggtcaggagaaattaccaagccctgatttgctggatttagctgagaaaatttatggagagatgctggctgctaattgtgttcttaataaggttaacgttgccaattttgctcgatgcctttgtggtgtcgggaagtttgacaaggcatttcagctcataaaggagatgatgaggaaaggttttgtccctgatacaagtacatactctaaggtgatcacttttctctgccatgctactaaggtagagaaagctttccttctgttccaagagatgaagatggtcggtgtaactcctgatgtgtatacatacacaattttgattgacagcttttgtaaagctggactcattgaacaagcccagtggttgtttgaggagatgaggagtgtgggttgctccccaactgtggtgacatatactgcacttattcatgcttacctcaaagctaagcaggtacctcaggctaatgatatttttcaccgaatggttgatgctggctgtcgtccaaatgatgttacttatggtgcattggtagatggtctctgtaaagcaggcaacatcagtaaggcttttgaagtctatgccaaattaattggaacttctgatagcgccgattctgatttttactttccatgtgaggacagacacacacttgctccaaatgttgtgacatatggtgcactagtagatggtttatgcaaagctcacaaagtggaccatgctcatgaattactagatgctatgttatcttctggttgcgagcccaatcacattgtgtacgatgctcttattgatggcttttgcaaagctggaaaaattgacagtgctcaggaggtatttctgcagatgacaaagtgtgggtaccttcccagtgtacatacgtacacctcgttgattgacaggatgttcaaggatggaagacttgatcttgcaatgaaagttctctctcagatgttaaaggattcttgtactcctaatgttgttacgtacacagctatgattgatggtctttgtaggataggtgaaagtgagaaggcactaaagcttctgtcattgatggaagagaaaggatgcagtccgaatgttgtaacttacactgctctaatagatggattaggcaaagctggcaagattgatctgagtcttgacctttttacacaaatgagcagaaaaggatgttctcccaattatgttacgtacagagttctgataaaccacttgtgtgctgctggccttttggataaggctcgtttactgcttggtgaaatgaagcagacttactggccaaagtacttacaaggataccgttgtgcaattcaaggtttcagcaagagctttatcgcttctctgggtattctggaggagatggaatcatatggcacagtaccaattgcacctgtttatggaatgctgatcgattgtttctccaaagctggcaggctggagatagctatggagttgcacaaagagatgatggaagttccgtcatctgtaaaaactgacaatgacatgtacgcttcattgatccaggcactttgtttagcatctcaagttgaggaagcatttcgattgtatagtgaaatgacaaggagaggctttgtacctgagttaagtgtctttgtttgcctcataaagggattagttgaagtaaaaaagtgggacgaagccctccagttgtgctatggcatatgtcatgaggttggtctacttctttcatataccactcaaatatttctatttacctttgttgttattgttgttggttatggcaagaatatagaaccacaggttgacttaggggattcatttagttctttcacagtatcagcatcagcaactattcaaccatttgttgagcagctctag
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| Protein seq | MIRRRAAAVATLRASLRRTCSHAAGDSEDPLLGLVEPPAPPQPPPRSRLGPRDFEFLREPAAAAAAGALPPPEAVLISKAIRAFGADFDGKAERVLRRCRGFLTDSVVVAVLGAVRDAPELCARFFLWAERQVGYSHTGACYDALADALGFDGRARDAERLLREIGEEDREVLGRLLNVLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEVGLLLSYTTQIFLFTFVVIVVGYGKNIEPQVDLGDSFSSFTVSASATIQPFVEQL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.156771 | 0.686647 | 1.326410 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0488500 | RBH | 1.541467 | 0.446139 | 1.725239 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g41140 | RBH | 0.778424 | 0.253725 | 0.422066 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0488500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0017940 | RBH | 0.687974 | 0.975274 | 2.647925 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0024000 | RBH | 0.077576 | 0.0 | 0.570318 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018430 | RBH | 0.437265 | 0.484458 | 4.092507 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0018160 | RBH | 0.112618 | 0.078607 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0018360 | RBH | 5.628732 | 6.499505 | 6.073926 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0381600 | RBH | 3.7339455 | 8.602724 | 8.6630405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017150 | RBH | 0.143271 | 0.179486 | 0.389564 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0381100 | RBH | 2.5724235 | 7.4791175 | 18.631407 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0017650 | RBH | 0.183534 | 0.082828 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0017490 | RBH | 0.591602 | 15.731515 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0017540 | RBH | 0.763553 | 6.160238 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018000 | RBH | 0.591295 | 0.310282 | 0.447950 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018150 | RBH | 0.115187 | 1.278187 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G017440 | RBH | 0.581846 | 1.443005 | 1.657606 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017380 | RBH | 1.214846 | 2.694646 | 3.185483 |
