Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0017820 | OGI:04072590 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:22518459-22521637 | ||||||||
| Gene Symbol | OsIRL3, IRL3 | ||||||||||
| DNA seq | actacgccataaaagcagccttcactctcgtctcctcctccggcgccgatcccctcccgaattccgccatggatccggcgccgcaggcccaccccatcctctcctacgtgctctcccgcctccccaccctcgccaaggcccgcccggccggcggcggcggcgacttcgacatcgagcagccgcccgtgcacacgccgtcgccgcggacgccctccaccgcgggggagttcgagctcgtggagcgtatgccggggctgcgccacccgtccgtgctccgcgccatgacccgcgccgtcgccgacgtgtcggccgcgcgctccgcgctccaggtcctcggcccgcggcccgaccacgagctcgtcgactcctcccgcgcgatcgtcgccgcgaccgacgccgaggccgggggctcgcggcgggtccccgagggggacctcgaggcctgccgcgccgtggtgcggctcgaggagacgcacgacgcctacgaggcgctgctgcaggaggccgaggggaggctcgaggcggtgtaccggtcggcgatggaggggaaggacctggaggagcccgacgggagggacgaatcggcggcggcagccgccggggatgatgctgcggtgcaggaggaggtgatcgcggtgctgaggcaggccgaggagggcaagccggtggagagcgtccgcctcgtggaccggcagctgcgccacctgccggaggcgttcgggaggatccaggggctccgcgtgctcgatgtctcgcgcaatcagctcgaggtgagaaatctgttatctccgcatgctttagatctgcttgtttagaaccctgtaacccaaacaatgcttgtactgggttttgtacgcatttagacatctgaacggatgggatttttctcttctgtactgtgaaattgtgaattgatggattgaatcttatgttgaagatgatcagaaatatagggccatatgcaaaatgtgtacgtgagcgataaaatgcctgttttgtggtgttgcacacattctaccatttgaactgtatgctgaaaatagtttgggcactgaattttcggtaggattgtgttttttgtgtgtgtgtgttatggtatggtcagttcctattatttttagagtcctcaagactgcgcatgtactattttctttatagatttactagtacaacttatttattggtgatgaaacagttactatcttaggccttaggatgtaaatagtgaaacactgtatgttagtatttctttttgctgtttttatttgattactaaattaggctatgggtggatgagtgctgaaagttatggatatagtgacccactagtcttgttttagagtactgagagttagctgttgaccatctacagtctgaaactcagaataactggatactagtatgtagtaagtattgacagaacaaatgtagaactggtaggagcttggcgtgtatgtaaattcctgattagattgtggattcactttctaatatcatcctgtatttaatggttggcttggatcattggaaaatcataggtaagagtagggaaggctggctttgttttgaattttggccacttcctctatatccgtgtttacattgatgtttagaaatttcttagtttatttttgggatattaggttgtgctcatttgagtttaaaaatagacaaacaattaagcacatactaactataattattttctttgataaacctttatactcagttatttaaagatagacataaacagttaagcgcgtactaaatataattattttctttcataacccttttatcctcagtggcttgcctggtcatatttccatagcgacatactgtacacattttgttaagtatgttgttgttgtgtcccttgcttcattggtgaatcaatgtgattgtaggttattccagatgctataggaggacttgatcatcttgaagagcttcgtcttgcttccaatgccttgatttctcttcctgattccattggactgctattgaatttgaggattctgaatgtgggaagcaacaggctaaggtcattgccagatagcatctcaaagtgcaggtagataactttctttagcttaactcttgggttcagcaaatgttactgttcaagtgactgattggtgcaactccaggtcattaattgagcttgatgcgagctacaacgggctcgcttatctgccaaccaacattgggtatgagctggtaaatctgcggaaactctgggtccatatgaacaagttgcggtcacttccatcatctatctgcgagatgagatcattgtacctcctggatgcacatttcaatgaactatgtggtctgccatctgccatagggaaactttcaagtcttgaaattctgaacctgagcagcaactttagtgacctgaaggatctccctgcttctttcggtgacctgctgaatctgcgcgagcttgacctcagcaacaaccagatccatgctcttcccgacaattttggtcggctggataagctagagaagctcaacctggagcaaaatcccctttctatgccgccaatggagatcgtgaacaaaggcgtggacgcggtgaaagaatacatgttgcagaggtggcttgacatcttgctcgaggaagaacggaagagcatcgcagcagcggagagccctcaagcaccgaccactccttcggcctggctggcacgcagcgtctcctgggtctccgacgtttccggaagccttgtggggtacctcagtggcgagaacaagacggagaaagatgcctacctggatcagcagtactgaaagcgctcacctgtgtggtgtttgtgcaccgtgtacatactataagcgttccatgcttaccatctcatctgggaaaatcgttttgtgttcctggtgagtcgagccatacactcgtgctaggcttgcatcccccaaagcaggctttggggtttattttgcccgttttaacttccggacgtccttttcatagcttcacttgttacagtattatattactttgtcgaataataatgtggagacaaatatgaccggagagtgcgctcaagaatatcaatgctttagagctttaggcctcaatgtttcgacctgtgctttagttgtgctggaatggaagcggcggccgtgttagtacaggttgccgtcgccggcaattgtgattc
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| CDS seq | atggatccggcgccgcaggcccaccccatcctctcctacgtgctctcccgcctccccaccctcgccaaggcccgcccggccggcggcggcggcgacttcgacatcgagcagccgcccgtgcacacgccgtcgccgcggacgccctccaccgcgggggagttcgagctcgtggagcgtatgccggggctgcgccacccgtccgtgctccgcgccatgacccgcgccgtcgccgacgtgtcggccgcgcgctccgcgctccaggtcctcggcccgcggcccgaccacgagctcgtcgactcctcccgcgcgatcgtcgccgcgaccgacgccgaggccgggggctcgcggcgggtccccgagggggacctcgaggcctgccgcgccgtggtgcggctcgaggagacgcacgacgcctacgaggcgctgctgcaggaggccgaggggaggctcgaggcggtgtaccggtcggcgatggaggggaaggacctggaggagcccgacgggagggacgaatcggcggcggcagccgccggggatgatgctgcggtgcaggaggaggtgatcgcggtgctgaggcaggccgaggagggcaagccggtggagagcgtccgcctcgtggaccggcagctgcgccacctgccggaggcgttcgggaggatccaggggctccgcgtgctcgatgtctcgcgcaatcagctcgaggttattccagatgctataggaggacttgatcatcttgaagagcttcgtcttgcttccaatgccttgatttctcttcctgattccattggactgctattgaatttgaggattctgaatgtgggaagcaacaggctaaggtcattgccagatagcatctcaaagtgcaggtcattaattgagcttgatgcgagctacaacgggctcgcttatctgccaaccaacattgggtatgagctggtaaatctgcggaaactctgggtccatatgaacaagttgcggtcacttccatcatctatctgcgagatgagatcattgtacctcctggatgcacatttcaatgaactatgtggtctgccatctgccatagggaaactttcaagtcttgaaattctgaacctgagcagcaactttagtgacctgaaggatctccctgcttctttcggtgacctgctgaatctgcgcgagcttgacctcagcaacaaccagatccatgctcttcccgacaattttggtcggctggataagctagagaagctcaacctggagcaaaatcccctttctatgccgccaatggagatcgtgaacaaaggcgtggacgcggtgaaagaatacatgttgcagaggtggcttgacatcttgctcgaggaagaacggaagagcatcgcagcagcggagagccctcaagcaccgaccactccttcggcctggctggcacgcagcgtctcctgggtctccgacgtttccggaagccttgtggggtacctcagtggcgagaacaagacggagaaagatgcctacctggatcagcagtactga
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| Protein seq | MDPAPQAHPILSYVLSRLPTLAKARPAGGGGDFDIEQPPVHTPSPRTPSTAGEFELVERMPGLRHPSVLRAMTRAVADVSAARSALQVLGPRPDHELVDSSRAIVAATDAEAGGSRRVPEGDLEACRAVVRLEETHDAYEALLQEAEGRLEAVYRSAMEGKDLEEPDGRDESAAAAAGDDAAVQEEVIAVLRQAEEGKPVESVRLVDRQLRHLPEAFGRIQGLRVLDVSRNQLEVIPDAIGGLDHLEELRLASNALISLPDSIGLLLNLRILNVGSNRLRSLPDSISKCRSLIELDASYNGLAYLPTNIGYELVNLRKLWVHMNKLRSLPSSICEMRSLYLLDAHFNELCGLPSAIGKLSSLEILNLSSNFSDLKDLPASFGDLLNLRELDLSNNQIHALPDNFGRLDKLEKLNLEQNPLSMPPMEIVNKGVDAVKEYMLQRWLDILLEEERKSIAAAESPQAPTTPSAWLARSVSWVSDVSGSLVGYLSGENKTEKDAYLDQQY |
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| Function | Plant intracellular Ras-group-related LRR protein 3 [UniProtKB/Swiss-Prot:Q7XK44] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0017820 | OsKeNa_04g0017820.01 | Chr04 | 22518459 | 22521637 | + | NAM | ||
| CDS seq | atggatccggcgccgcaggcccaccccatcctctcctacgtgctctcccgcctccccaccctcgccaaggcccgcccggccggcggcggcggcgacttcgacatcgagcagccgcccgtgcacacgccgtcgccgcggacgccctccaccgcgggggagttcgagctcgtggagcgtatgccggggctgcgccacccgtccgtgctccgcgccatgacccgcgccgtcgccgacgtgtcggccgcgcgctccgcgctccaggtcctcggcccgcggcccgaccacgagctcgtcgactcctcccgcgcgatcgtcgccgcgaccgacgccgaggccgggggctcgcggcgggtccccgagggggacctcgaggcctgccgcgccgtggtgcggctcgaggagacgcacgacgcctacgaggcgctgctgcaggaggccgaggggaggctcgaggcggtgtaccggtcggcgatggaggggaaggacctggaggagcccgacgggagggacgaatcggcggcggcagccgccggggatgatgctgcggtgcaggaggaggtgatcgcggtgctgaggcaggccgaggagggcaagccggtggagagcgtccgcctcgtggaccggcagctgcgccacctgccggaggcgttcgggaggatccaggggctccgcgtgctcgatgtctcgcgcaatcagctcgaggttattccagatgctataggaggacttgatcatcttgaagagcttcgtcttgcttccaatgccttgatttctcttcctgattccattggactgctattgaatttgaggattctgaatgtgggaagcaacaggctaaggtcattgccagatagcatctcaaagtgcaggtcattaattgagcttgatgcgagctacaacgggctcgcttatctgccaaccaacattgggtatgagctggtaaatctgcggaaactctgggtccatatgaacaagttgcggtcacttccatcatctatctgcgagatgagatcattgtacctcctggatgcacatttcaatgaactatgtggtctgccatctgccatagggaaactttcaagtcttgaaattctgaacctgagcagcaactttagtgacctgaaggatctccctgcttctttcggtgacctgctgaatctgcgcgagcttgacctcagcaacaaccagatccatgctcttcccgacaattttggtcggctggataagctagagaagctcaacctggagcaaaatcccctttctatgccgccaatggagatcgtgaacaaaggcgtggacgcggtgaaagaatacatgttgcagaggtggcttgacatcttgctcgaggaagaacggaagagcatcgcagcagcggagagccctcaagcaccgaccactccttcggcctggctggcacgcagcgtctcctgggtctccgacgtttccggaagccttgtggggtacctcagtggcgagaacaagacggagaaagatgcctacctggatcagcagtactga
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| Protein seq | MDPAPQAHPILSYVLSRLPTLAKARPAGGGGDFDIEQPPVHTPSPRTPSTAGEFELVERMPGLRHPSVLRAMTRAVADVSAARSALQVLGPRPDHELVDSSRAIVAATDAEAGGSRRVPEGDLEACRAVVRLEETHDAYEALLQEAEGRLEAVYRSAMEGKDLEEPDGRDESAAAAAGDDAAVQEEVIAVLRQAEEGKPVESVRLVDRQLRHLPEAFGRIQGLRVLDVSRNQLEVIPDAIGGLDHLEELRLASNALISLPDSIGLLLNLRILNVGSNRLRSLPDSISKCRSLIELDASYNGLAYLPTNIGYELVNLRKLWVHMNKLRSLPSSICEMRSLYLLDAHFNELCGLPSAIGKLSSLEILNLSSNFSDLKDLPASFGDLLNLRELDLSNNQIHALPDNFGRLDKLEKLNLEQNPLSMPPMEIVNKGVDAVKEYMLQRWLDILLEEERKSIAAAESPQAPTTPSAWLARSVSWVSDVSGSLVGYLSGENKTEKDAYLDQQY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.196030 | 4.034899 | 2.470193 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0476700 | RBH | 1.311108 | 1.704552 | 10.735376 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g40080 | RBH | 0.714891 | 0.975819 | 1.723603 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0476700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0017030 | RBH | 0.386915 | 20.563818 | 7.325493 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0023360 | RBH | 0.064947 | 0.0 | 1.352847 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0017520 | RBH | 1.942538 | 6.874287 | 5.612568 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0017240 | RBH | 0.138560 | 0.409126 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0017470 | RBH | 4.714903 | 14.928010 | 15.533792 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0371900 | RBH | 10.5448175 | 21.874049 | 43.5923195 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0016260 | RBH | 0.355775 | 1.252994 | 1.219484 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0370300 | RBH | 6.8789025 | 12.381739 | 11.3674245 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0016820 | RBH | 0.358919 | 0.296363 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0016680 | RBH | 0.804447 | 8.136926 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0016700 | RBH | 3.746852 | 29.070940 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0017190 | RBH | 0.399622 | 1.439533 | 1.243203 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0017300 | RBH | 0.159981 | 14.884801 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G016530 | RBH | 0.140279 | 4.051322 | 2.249632 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0016530 | RBH | 1.537130 | 25.024279 | 8.508677 |
