Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0017370 | OGI:04071360 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:22161098-22164149 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggaattcgcgattgacaacatcttccggcctctgcggaacttgttcacgcggacggtgggctacatccgggcgctcgagtccgaggctagatggctgaagagccagcgcgacgatgtgatgaaagaggtgaggttagcggagaggcagggcatggaagcgaccaaccaggtgagccactggctcgaagccgttgcctcgctcttggttcgtgccatcgggatcgtcgcggagttccctagaggaggggcggcggcgggggggcttggcctgcgtgcagcctaccggctgagcaagcgcgccgacgaggcgcgcgccgaagccgtgtcacttgtagagcaaagatccaccttccagaaggtggcggacgcgcccgtgttcgcctgcacggaggtgctcccgacggcggccccgtcgatcggcctggacgcgctcctggcgcgggtcgcgaatgcgttccaggagggcggcaccagcgtgatcggcatctatggcgcgccgggcgtcgggaagaccaccctgttgcaccacttcaacaacaccttcctctcggcgtccgcggcgtccatggacatacatctcgtcatctacgtggaggtcacggagcgctacagcgcgggcgccgtccagaaggccatcggcggccgactaggcctccggtgggaggacgggaagagcaccaaggagaaggcgctcgccctgtgcacgtatctccaccggtggaacttcgtgctcctcctggacgacgtgtgggagcccctcaacctcgcggagctcggagtccccgtgcccggccggcacggcaagagcaaggtgctgctgacgacgcggctcgagcacgtgtgcgaccagatggacgtgacgaggaagatcaaggtggagtgtttgtccgcggccgattcgtgggagctgttcaagaacaaggtgggcaacgcgttcgtcaccagcagggagatccagccgcttgcccaggcgatggcgtcgcggtgcggcggcctgcccctcggtctcatcacggttgcacgggccatggcttgcaaaagggtaacgcgggagtgggaacatagcatggccgtgctcaatctggcgccatggcagctcgacggcgtcgaggccaacctcctcgtcagcctgaagcggagctatgacagcttacgggacgacagcctcaggatctgcctcctgtattgctctttgttctcgggagagacgtccaaggaattacttgtcgagagcttcatcggagaaggatttgtgagcgatgtgtctgctgatgacatggatgatctctacaacaaaggccactacatgcttggtatcctagtgacctcctctctgctggaagcagccggtgactaccatgtcaccatgcatcccatggtgcgagccatggccttgtgggtggttgcagattgcggcaggattgacaacaagtggctagtccgagcaggtcttgtgacaagcgccgcgccacgggcggataaatggacaggcgctgagagggtgtcactgatgcggactggcatcaacgagctgaatgatgcaccgacgtgctctgttctgaaaacgttgctgctccagagcaaccggctgctggggaggatatgccacgacttcttcagcttcatgccttgtctcaggttgctggacctatcggacacgctgatcaccgcattgccctccgagatcaacctccttgtcaccctgcagtaccttcgtctcaacaacacgactatccggtccttgcccgctggaataggagccctggtgaacttgcgattcttgttgctgtccaatgtgcccgtccaaaccattgccgccggcgtgctaaacccgctcacggcgctgcaggtcctgtgcatggaccactgctggagcagttggatggacgtcggaagctgtgagcctgagtccggtgactcaagaaaacgaaggcggcacgacctccggcaacgcgtcaacctgcgcgaactcgagagcctgaaaagcttgcagatgcttgacatatccgtgcaaacgctccactctctggagaagctctcgcagtctcctcatctcgcagagcacttgcggaatttgcatgtccaggactgcagcgacttgccgagcatccagttttcgccttccagcctctggaggcacatgagcagattgaagggcatcatcatcagtggctgctgcaacctggagaatgtcattattaccggaggtgaatacaagggcgagcaaccatggtcacttgatcggactgtcagcatgatgcgttacagggtgcccgataagcctttggacgttgacagcgtgtatcgtccacagactagccagtcattggacatggattgccgcaagctggtacccctgctgccttctctccaaagtatcatccttcgcaagctcccaaaggccaagattgtttggcagggtggcagcctggagtatttatcctccttgagcatttcatcctgcagtgttcttgagcatcttatatcctacgacacagaaggattgagccatggatcgcctgcggagacggtctttccaagcctcaaggagttagagttgcacgacttgccaaacatgagaagcataggccctgaatccatagcagtgaatttcccaagcttggcgagcctcaaagtagtcagatgcagcaggcttaagaagcttaatcttgtggcaggatgcctgaaagaactccagtgtacacagacatggtggaacaagctagtatgggaggatgagaatctgaaaacggttttcttgtcttccgtgaaaccattagcctaacctccttgatgacaatccctcactttaatttgacgccgcttgtattggtgttccacggctactgattggtggttcagtctggactgaacggaacagtttgttttcatgccaatttataggtgggaaatgtggcatcattaatactgtaataccagctaccgcgaggttgataaggtagatggcatttattttagcactgggaattgctaacatggtaatactgagtattcagcctgttagatcaaatagatcctatatggacatc
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| CDS seq | atggaattcgcgattgacaacatcttccggcctctgcggaacttgttcacgcggacggtgggctacatccgggcgctcgagtccgaggctagatggctgaagagccagcgcgacgatgtgatgaaagaggtgaggttagcggagaggcagggcatggaagcgaccaaccaggtgagccactggctcgaagccgttgcctcgctcttggttcgtgccatcgggatcgtcgcggagttccctagaggaggggcggcggcgggggggcttggcctgcgtgcagcctaccggctgagcaagcgcgccgacgaggcgcgcgccgaagccgtgtcacttgtagagcaaagatccaccttccagaaggtggcggacgcgcccgtgttcgcctgcacggaggtgctcccgacggcggccccgtcgatcggcctggacgcgctcctggcgcgggtcgcgaatgcgttccaggagggcggcaccagcgtgatcggcatctatggcgcgccgggcgtcgggaagaccaccctgttgcaccacttcaacaacaccttcctctcggcgtccgcggcgtccatggacatacatctcgtcatctacgtggaggtcacggagcgctacagcgcgggcgccgtccagaaggccatcggcggccgactaggcctccggtgggaggacgggaagagcaccaaggagaaggcgctcgccctgtgcacgtatctccaccggtggaacttcgtgctcctcctggacgacgtgtgggagcccctcaacctcgcggagctcggagtccccgtgcccggccggcacggcaagagcaaggtgctgctgacgacgcggctcgagcacgtgtgcgaccagatggacgtgacgaggaagatcaaggtggagtgtttgtccgcggccgattcgtgggagctgttcaagaacaaggtgggcaacgcgttcgtcaccagcagggagatccagccgcttgcccaggcgatggcgtcgcggtgcggcggcctgcccctcggtctcatcacggttgcacgggccatggcttgcaaaagggtaacgcgggagtgggaacatagcatggccgtgctcaatctggcgccatggcagctcgacggcgtcgaggccaacctcctcgtcagcctgaagcggagctatgacagcttacgggacgacagcctcaggatctgcctcctgtattgctctttgttctcgggagagacgtccaaggaattacttgtcgagagcttcatcggagaaggatttgtgagcgatgtgtctgctgatgacatggatgatctctacaacaaaggccactacatgcttggtatcctagtgacctcctctctgctggaagcagccggtgactaccatgtcaccatgcatcccatggtgcgagccatggccttgtgggtggttgcagattgcggcaggattgacaacaagtggctagtccgagcaggtcttgtgacaagcgccgcgccacgggcggataaatggacaggcgctgagagggtgtcactgatgcggactggcatcaacgagctgaatgatgcaccgacgtgctctgttctgaaaacgttgctgctccagagcaaccggctgctggggaggatatgccacgacttcttcagcttcatgccttgtctcaggttgctggacctatcggacacgctgatcaccgcattgccctccgagatcaacctccttgtcaccctgcagtaccttcgtctcaacaacacgactatccggtccttgcccgctggaataggagccctggtgaacttgcgattcttgttgctgtccaatgtgcccgtccaaaccattgccgccggcgtgctaaacccgctcacggcgctgcaggtcctgtgcatggaccactgctggagcagttggatggacgtcggaagctgtgagcctgagtccggtgactcaagaaaacgaaggcggcacgacctccggcaacgcgtcaacctgcgcgaactcgagagcctgaaaagcttgcagatgcttgacatatccgtgcaaacgctccactctctggagaagctctcgcagtctcctcatctcgcagagcacttgcggaatttgcatgtccaggactgcagcgacttgccgagcatccagttttcgccttccagcctctggaggcacatgagcagattgaagggcatcatcatcagtggctgctgcaacctggagaatgtcattattaccggaggtgaatacaagggcgagcaaccatggtcacttgatcggactgtcagcatgatgcgttacagggtgcccgataagcctttggacgttgacagcgtgtatcgtccacagactagccagtcattggacatggattgccgcaagctggtacccctgctgccttctctccaaagtatcatccttcgcaagctcccaaaggccaagattgtttggcagggtggcagcctggagtatttatcctccttgagcatttcatcctgcagtgttcttgagcatcttatatcctacgacacagaaggattgagccatggatcgcctgcggagacggtctttccaagcctcaaggagttagagttgcacgacttgccaaacatgagaagcataggccctgaatccatagcagtgaatttcccaagcttggcgagcctcaaagtagtcagatgcagcaggcttaagaagcttaatcttgtggcaggatgcctgaaagaactccagtgtacacagacatggtggaacaagctagtatgggaggatgagaatctgaaaacggttttcttgtcttccgtgaaaccattagcctaa
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| Protein seq | MEFAIDNIFRPLRNLFTRTVGYIRALESEARWLKSQRDDVMKEVRLAERQGMEATNQVSHWLEAVASLLVRAIGIVAEFPRGGAAAGGLGLRAAYRLSKRADEARAEAVSLVEQRSTFQKVADAPVFACTEVLPTAAPSIGLDALLARVANAFQEGGTSVIGIYGAPGVGKTTLLHHFNNTFLSASAASMDIHLVIYVEVTERYSAGAVQKAIGGRLGLRWEDGKSTKEKALALCTYLHRWNFVLLLDDVWEPLNLAELGVPVPGRHGKSKVLLTTRLEHVCDQMDVTRKIKVECLSAADSWELFKNKVGNAFVTSREIQPLAQAMASRCGGLPLGLITVARAMACKRVTREWEHSMAVLNLAPWQLDGVEANLLVSLKRSYDSLRDDSLRICLLYCSLFSGETSKELLVESFIGEGFVSDVSADDMDDLYNKGHYMLGILVTSSLLEAAGDYHVTMHPMVRAMALWVVADCGRIDNKWLVRAGLVTSAAPRADKWTGAERVSLMRTGINELNDAPTCSVLKTLLLQSNRLLGRICHDFFSFMPCLRLLDLSDTLITALPSEINLLVTLQYLRLNNTTIRSLPAGIGALVNLRFLLLSNVPVQTIAAGVLNPLTALQVLCMDHCWSSWMDVGSCEPESGDSRKRRRHDLRQRVNLRELESLKSLQMLDISVQTLHSLEKLSQSPHLAEHLRNLHVQDCSDLPSIQFSPSSLWRHMSRLKGIIISGCCNLENVIITGGEYKGEQPWSLDRTVSMMRYRVPDKPLDVDSVYRPQTSQSLDMDCRKLVPLLPSLQSIILRKLPKAKIVWQGGSLEYLSSLSISSCSVLEHLISYDTEGLSHGSPAETVFPSLKELELHDLPNMRSIGPESIAVNFPSLASLKVVRCSRLKKLNLVAGCLKELQCTQTWWNKLVWEDENLKTVFLSSVKPLA |
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| Function | Disease resistance protein RPS2 [UniProtKB/Swiss-Prot:Q42484] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0017370 | OsKeNa_04g0017370.01 | Chr04 | 22161098 | 22164149 | + | NAM | ||
| CDS seq | atggaattcgcgattgacaacatcttccggcctctgcggaacttgttcacgcggacggtgggctacatccgggcgctcgagtccgaggctagatggctgaagagccagcgcgacgatgtgatgaaagaggtgaggttagcggagaggcagggcatggaagcgaccaaccaggtgagccactggctcgaagccgttgcctcgctcttggttcgtgccatcgggatcgtcgcggagttccctagaggaggggcggcggcgggggggcttggcctgcgtgcagcctaccggctgagcaagcgcgccgacgaggcgcgcgccgaagccgtgtcacttgtagagcaaagatccaccttccagaaggtggcggacgcgcccgtgttcgcctgcacggaggtgctcccgacggcggccccgtcgatcggcctggacgcgctcctggcgcgggtcgcgaatgcgttccaggagggcggcaccagcgtgatcggcatctatggcgcgccgggcgtcgggaagaccaccctgttgcaccacttcaacaacaccttcctctcggcgtccgcggcgtccatggacatacatctcgtcatctacgtggaggtcacggagcgctacagcgcgggcgccgtccagaaggccatcggcggccgactaggcctccggtgggaggacgggaagagcaccaaggagaaggcgctcgccctgtgcacgtatctccaccggtggaacttcgtgctcctcctggacgacgtgtgggagcccctcaacctcgcggagctcggagtccccgtgcccggccggcacggcaagagcaaggtgctgctgacgacgcggctcgagcacgtgtgcgaccagatggacgtgacgaggaagatcaaggtggagtgtttgtccgcggccgattcgtgggagctgttcaagaacaaggtgggcaacgcgttcgtcaccagcagggagatccagccgcttgcccaggcgatggcgtcgcggtgcggcggcctgcccctcggtctcatcacggttgcacgggccatggcttgcaaaagggtaacgcgggagtgggaacatagcatggccgtgctcaatctggcgccatggcagctcgacggcgtcgaggccaacctcctcgtcagcctgaagcggagctatgacagcttacgggacgacagcctcaggatctgcctcctgtattgctctttgttctcgggagagacgtccaaggaattacttgtcgagagcttcatcggagaaggatttgtgagcgatgtgtctgctgatgacatggatgatctctacaacaaaggccactacatgcttggtatcctagtgacctcctctctgctggaagcagccggtgactaccatgtcaccatgcatcccatggtgcgagccatggccttgtgggtggttgcagattgcggcaggattgacaacaagtggctagtccgagcaggtcttgtgacaagcgccgcgccacgggcggataaatggacaggcgctgagagggtgtcactgatgcggactggcatcaacgagctgaatgatgcaccgacgtgctctgttctgaaaacgttgctgctccagagcaaccggctgctggggaggatatgccacgacttcttcagcttcatgccttgtctcaggttgctggacctatcggacacgctgatcaccgcattgccctccgagatcaacctccttgtcaccctgcagtaccttcgtctcaacaacacgactatccggtccttgcccgctggaataggagccctggtgaacttgcgattcttgttgctgtccaatgtgcccgtccaaaccattgccgccggcgtgctaaacccgctcacggcgctgcaggtcctgtgcatggaccactgctggagcagttggatggacgtcggaagctgtgagcctgagtccggtgactcaagaaaacgaaggcggcacgacctccggcaacgcgtcaacctgcgcgaactcgagagcctgaaaagcttgcagatgcttgacatatccgtgcaaacgctccactctctggagaagctctcgcagtctcctcatctcgcagagcacttgcggaatttgcatgtccaggactgcagcgacttgccgagcatccagttttcgccttccagcctctggaggcacatgagcagattgaagggcatcatcatcagtggctgctgcaacctggagaatgtcattattaccggaggtgaatacaagggcgagcaaccatggtcacttgatcggactgtcagcatgatgcgttacagggtgcccgataagcctttggacgttgacagcgtgtatcgtccacagactagccagtcattggacatggattgccgcaagctggtacccctgctgccttctctccaaagtatcatccttcgcaagctcccaaaggccaagattgtttggcagggtggcagcctggagtatttatcctccttgagcatttcatcctgcagtgttcttgagcatcttatatcctacgacacagaaggattgagccatggatcgcctgcggagacggtctttccaagcctcaaggagttagagttgcacgacttgccaaacatgagaagcataggccctgaatccatagcagtgaatttcccaagcttggcgagcctcaaagtagtcagatgcagcaggcttaagaagcttaatcttgtggcaggatgcctgaaagaactccagtgtacacagacatggtggaacaagctagtatgggaggatgagaatctgaaaacggttttcttgtcttccgtgaaaccattagcctaa
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| Protein seq | MEFAIDNIFRPLRNLFTRTVGYIRALESEARWLKSQRDDVMKEVRLAERQGMEATNQVSHWLEAVASLLVRAIGIVAEFPRGGAAAGGLGLRAAYRLSKRADEARAEAVSLVEQRSTFQKVADAPVFACTEVLPTAAPSIGLDALLARVANAFQEGGTSVIGIYGAPGVGKTTLLHHFNNTFLSASAASMDIHLVIYVEVTERYSAGAVQKAIGGRLGLRWEDGKSTKEKALALCTYLHRWNFVLLLDDVWEPLNLAELGVPVPGRHGKSKVLLTTRLEHVCDQMDVTRKIKVECLSAADSWELFKNKVGNAFVTSREIQPLAQAMASRCGGLPLGLITVARAMACKRVTREWEHSMAVLNLAPWQLDGVEANLLVSLKRSYDSLRDDSLRICLLYCSLFSGETSKELLVESFIGEGFVSDVSADDMDDLYNKGHYMLGILVTSSLLEAAGDYHVTMHPMVRAMALWVVADCGRIDNKWLVRAGLVTSAAPRADKWTGAERVSLMRTGINELNDAPTCSVLKTLLLQSNRLLGRICHDFFSFMPCLRLLDLSDTLITALPSEINLLVTLQYLRLNNTTIRSLPAGIGALVNLRFLLLSNVPVQTIAAGVLNPLTALQVLCMDHCWSSWMDVGSCEPESGDSRKRRRHDLRQRVNLRELESLKSLQMLDISVQTLHSLEKLSQSPHLAEHLRNLHVQDCSDLPSIQFSPSSLWRHMSRLKGIIISGCCNLENVIITGGEYKGEQPWSLDRTVSMMRYRVPDKPLDVDSVYRPQTSQSLDMDCRKLVPLLPSLQSIILRKLPKAKIVWQGGSLEYLSSLSISSCSVLEHLISYDTEGLSHGSPAETVFPSLKELELHDLPNMRSIGPESIAVNFPSLASLKVVRCSRLKKLNLVAGCLKELQCTQTWWNKLVWEDENLKTVFLSSVKPLA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.352363 | 0.099343 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0470500 | RBH | 0.087601 | 0.0 | 0.427506 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g39460 | RBH | 0.059240 | 0.0 | 0.110048 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0470500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0016620 | RBH | 0.0 | 0.859812 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0021390 | RBH | 0.045170 | 0.378130 | 0.222132 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0017090 | RBH | 0.0 | 0.0 | 0.216940 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0016820 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0017050 | RBH | 0.0 | 3.110611 | 1.014952 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0366000 | RBH | 0.132549 | 4.0391635 | 0.1802245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0015850 | RBH | 0.0 | 0.052196 | 0.159892 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0364900 | RBH | 0.139364 | 1.9469055 | 0.057593 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0016400 | RBH | 0.026959 | 0.157247 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0016280 | RBH | 0.178068 | 2.949274 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0016270 | RBH | 0.771868 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0016790 | RBH | 0.0 | 0.078220 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0016880 | RBH | 0.0 | 0.463198 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G016090 | RBH | 0.0 | 0.500824 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0016140 | RBH | 0.0 | 0.000000 | 0.0 |
