Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0016890 | OGI:04070620 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:21798927-21801315 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cgcggaaaaaaaatcagatcaggttccgcatccactccgctccccgccccggcgagaggctgcagctcagctcatcgccggcgggcaagcccgatctcccccaacctgctccgctccttgcgctctcccaatcccgcatctcctcctcctccgaccccgcgaggtgggggtcggaggtcgtcgtcgtcgtcgtcgttgtcgcctgcctcctctccgggcgctcgctgagtttgccggcggcgtgggctgtgtgcggtgtgcggtgtgcgcgcgcgatttgtagctgggagacgcttgacttgttgcctccgctagctcttctggccttcgtgtcgacatggctgcaatgtgatttgccgcgccgcgcgctgttcctctcttctggaggtaaagcttcgttgctgtgtaacacctttttccgatcccttcttgcctgaaatttgctgtgctagtggagcgcactggttgaatacttgcacgtgactttggtagctaggtatcagacgttatacattcaatataatttcttcattttttgtttgattggattgtccgccttcgtgcctggtttacaagccagtttcggcctagggtttgaacaggttcgcttgaatttaaggcgaaatataaattggttactttgtcgtgaattgtcatagaagttggaacctggtattagttactttgtcgtgaactgttgaaattggagggagattcaccttttctttggaatgatagctacgcttactgcaggattaactgcgatcgtatatttttggtctttagctccgtaaccattttagttgccttcattgctcaattctttcttggatgtcttttatgttcccagggtaaaatggcaggcagagcaaggtgggtagcaaagtatacaaagggtcttgttgatgtgcttcatgagaacaatatttcacactaccgtacccagaatggatggagaaccgatgggtggaggaaaattgttagcgaattcaatgataggtacccagatgcaaaatttactaaagttcaaattcaggagcatgagacacaactgaagagagattatagattggtaaaattaattctccagcgggaaggtgttacttgggatcaaaatgcttccatgattagaacgacagatgaaatctgggatgagataattgaagtgagcttcgaactcttcaacttcagttgttatttgtgtaatcaagtgtgaatttgatcatttatttcaattttataggagatgcccaaggcgcggaagtaccaatttaagagctttccgttacttcaatcacttgaggtgttatttgaaggtaccttctgtccactcaaattggatcaggacaaacattgttatgtgtgcctttgcttttctgaaactaacgtgctctactgtgaaaaggtgacattcctgaaggggaacacaacttaatgccgagcaaacctcaacttgctggtaggaatgttgatgagggaggcaataacatgagcacagctccgagcatacctggaagaccttgtagcacagttattgccggcattgatgatggggagaacaacatcggcatacttcagagaactccagagttagggcaacaaggtctggatgatgttgatattctgcaaaatccaacagaagaggtactggaaagaccacagcacggtgccgacccaaaaccacaaagtgctgatgaaccggcgcactcaagctcttgcatagaacctcaaaaggacaagcgaaagaagcgtaaggtccctgacatccagcaaaccatggaggcttttctggagttcagaatgaagcaagctcgcttgaaggaacaagcgaagaaggagaagaaggatggtgagccgttctcgatctcgacgtgtatcaaggcactgcattcaatgaccgacgtatctgatcaggtcaagattctagcctctgatgttttcaaggatgcagcgaaccgagagatcttcctttcctacgatctcaggcttcgcacgctgtggatcaagagggaagtcaacaggttactcacttgatcaagtggattgccgcatcttgttgcccttcgtctccggaagattagatgaacgtagaaactataattattatggatcagctgaaagtcatgaactgatcgatttgctaaaattatggatcgggtcagatctgaacctaggagtcatgcaagtcgtcaagcactcgttttccctatgctcagtgcttagtggcattggcttgcccacaaacacctccagatcatttcgtatgctctgtaatagtgtagttttgctgattggtggttgctaaaattagatcgtgtcaattcctgttatctggtatggcccttgcttcatctgttggcgcttcactaatgtcttagcgatgtttttt
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| CDS seq | atgattagaacgacagatgaaatctgggatgagataattgaagagatgcccaaggcgcggaagtaccaatttaagagctttccgttacttcaatcacttgaggtgttatttgaaggtgacattcctgaaggggaacacaacttaatgccgagcaaacctcaacttgctggtaggaatgttgatgagggaggcaataacatgagcacagctccgagcatacctggaagaccttgtagcacagttattgccggcattgatgatggggagaacaacatcggcatacttcagagaactccagagttagggcaacaaggtctggatgatgttgatattctgcaaaatccaacagaagaggtactggaaagaccacagcacggtgccgacccaaaaccacaaagtgctgatgaaccggcgcactcaagctcttgcatagaacctcaaaaggacaagcgaaagaagcgtaaggtccctgacatccagcaaaccatggaggcttttctggagttcagaatgaagcaagctcgcttgaaggaacaagcgaagaaggagaagaaggatggtgagccgttctcgatctcgacgtgtatcaaggcactgcattcaatgaccgacgtatctgatcaggtcaagattctagcctctgatgttttcaaggatgcagcgaaccgagagatcttcctttcctacgatctcaggcttcgcacgctgtggatcaagagggaagtcaacaggttactcacttga
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| Protein seq | MIRTTDEIWDEIIEEMPKARKYQFKSFPLLQSLEVLFEGDIPEGEHNLMPSKPQLAGRNVDEGGNNMSTAPSIPGRPCSTVIAGIDDGENNIGILQRTPELGQQGLDDVDILQNPTEEVLERPQHGADPKPQSADEPAHSSSCIEPQKDKRKKRKVPDIQQTMEAFLEFRMKQARLKEQAKKEKKDGEPFSISTCIKALHSMTDVSDQVKILASDVFKDAANREIFLSYDLRLRTLWIKREVNRLLT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0016890 | OsKeNa_04g0016890.01 | Chr04 | 21800050 | 21801315 | + | NAM | ||
| CDS seq | atgattagaacgacagatgaaatctgggatgagataattgaagagatgcccaaggcgcggaagtaccaatttaagagctttccgttacttcaatcacttgaggtgttatttgaaggtgacattcctgaaggggaacacaacttaatgccgagcaaacctcaacttgctggtaggaatgttgatgagggaggcaataacatgagcacagctccgagcatacctggaagaccttgtagcacagttattgccggcattgatgatggggagaacaacatcggcatacttcagagaactccagagttagggcaacaaggtctggatgatgttgatattctgcaaaatccaacagaagaggtactggaaagaccacagcacggtgccgacccaaaaccacaaagtgctgatgaaccggcgcactcaagctcttgcatagaacctcaaaaggacaagcgaaagaagcgtaaggtccctgacatccagcaaaccatggaggcttttctggagttcagaatgaagcaagctcgcttgaaggaacaagcgaagaaggagaagaaggatggtgagccgttctcgatctcgacgtgtatcaaggcactgcattcaatgaccgacgtatctgatcaggtcaagattctagcctctgatgttttcaaggatgcagcgaaccgagagatcttcctttcctacgatctcaggcttcgcacgctgtggatcaagagggaagtcaacaggttactcacttga
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| Protein seq | MIRTTDEIWDEIIEEMPKARKYQFKSFPLLQSLEVLFEGDIPEGEHNLMPSKPQLAGRNVDEGGNNMSTAPSIPGRPCSTVIAGIDDGENNIGILQRTPELGQQGLDDVDILQNPTEEVLERPQHGADPKPQSADEPAHSSSCIEPQKDKRKKRKVPDIQQTMEAFLEFRMKQARLKEQAKKEKKDGEPFSISTCIKALHSMTDVSDQVKILASDVFKDAANREIFLSYDLRLRTLWIKREVNRLLT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0016890 | OsKeNa_04g0016890.02 | Chr04 | 21798927 | 21801254 | + | IsoSeq | ||
| CDS seq | cggaaaaaaaatcagatcaggttccgcatccactccgctccccgccccggcgagaggctgcagctcagctcatcgccggcgggcaagcccgatctcccccaacctgctccgctccttgcgctctcccaatcccgcatctcctcctcctccgaccccgcgaggtgggggtcggaggtcgtcgtcgtcgtcgtcgttgtcgcctgcctcctctccgggcgctcgctgagtttgccggcggcgtgggctgtgtgcggtgtgcggtgtgcgcgcgcgatttgtagctgggagacgcttgacttgttgcctccgctagctcttctggccttcgtgtcgacatggctgcaatgtgatttgccgcgccgcgcgctgttcctctcttctggag
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| Protein seq | RKKNQIRFRIHSAPRPGERLQLSSSPAGKPDLPQPAPLLALSQSRISSSSDPARWGSEVVVVVVVVACLLSGRSLSLPAAWAVCGVRCARAICSWETLDLLPPLALLAFVSTWLQCDLPRRALFLSSG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.655359 | 1.266675 | 0.851773 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0463600 | RBH | 0.857038 | 1.685458 | 2.431659 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g38960 | RBH | 0.535137 | 1.046695 | 0.581372 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0463600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0016150 | RBH | 0.901212 | 5.912652 | 2.676362 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0016620 | RBH | 2.697491 | 7.201818 | 4.278592 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0016350 | RBH | 0.468739 | 0.105342 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0016580 | RBH | 16.461063 | 9.360658 | 11.729280 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0361200 | RBH | 10.651913 | 10.5139695 | 7.258012 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0015380 | RBH | 0.472336 | 1.007055 | 1.735802 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0359600 | RBH | 8.2204015 | 10.9460235 | 19.6442525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0015930 | RBH | 0.500465 | 0.106338 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0015820 | RBH | 0.570591 | 7.056775 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0015790 | RBH | 1.117521 | 8.986115 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0016310 | RBH | 2.912257 | 0.663403 | 1.224299 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0016420 | RBH | 0.395403 | 7.688501 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G015610 | RBH | 0.996805 | 1.535697 | 2.478302 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0015680 | RBH | 4.689619 | 1.449291 | 10.591898 |
