Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0014250 | OGI:01024340 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:19732941-19735858 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaatgcaattcttcctggtgctcaggtggcagtgactagaaataaaacacatattaaatgaaaatgtttaaactaaaactttatgtgcacagtcataacccccaatgtatttttttttgcaaaacagggtggtcttcccttgctccaaaacacagagattctaggtggtggaccaattgggatatttctaattccaaaatctttgaaatcaagataattaatctaaggaaacaacacaaaagaaaaagaataagtcaatctttagaaatattatgggtttaaaaaatgacttaagtaataaagaagagatgcatacagcaagtaagtgtccgcagccaccaagggtttttgatgtttgttcctttgatttactctccttttggaacttggctatgtatgtcataagccattcataaacaaactttgaccagttccactttgagctggacttgatattaatcagaggttcaaggtattttgggctggggtgagtgtctgagttggggcaaagaaaggttgatagtgcaaccaccatgaaacaacgtaggacatcatcttctgatagtttgttcacacccttgtcgctaagcaaccttgtcattcttgatctctaaacctccatttgggataccaagtatgaagttggtggtgtttgggttgattggtatggatctcccattgacaactatatctgagcagctgacatcagtgtgactagctatccatttgacaaaagatagtggtatagcacacctttgaaagtttagaagagaaccaaaagcagaattctcaataattaacctttgctcgttgctgagcccttcaatcaaattggaaaagtatgtgatgtttagtctgcttcttggttttggggactctgcacttctagatttattcatgttttgtgtgctggaagaaaaaaaatagagatgtaattatgtcttgttaacaaagaacaacataaactaattaacatactagatgtggaaaaaaatgtttaggaaaaaaaagacagaaagtgataccttttgtttttgtctccttactggtttgtctgtcctagctcttttccttttgatcgatcctgaaaactaacagaggcaaaacaagtatgaagttattgatagctgtctgtggtagtagaaaatgatattttggaaaaaaaggaagaaacatatataccagatcttttaatgtgctgacgagatctttttttgttatgtatttgtcagaatcactggtttcttcctcttctgaaatagagttggcataatcagaatctgccactttgttgtccgacttgctatttgatgaacattcatcatctgatgatgtcctgtcacttgccatgctggaaaaaagaactagagaagtaagcacattaaaaggaaaaaagagagatcttgtaaccaatcaaaccaaaaaaaaactctcaatgtcctgataggctgctaagacacatgttaaactacgccAaaaaaaaaaagaagtagtgccaaattcaaacaataccatttgcatcttgttgctttttgaaaattcgtgcaaaggttgaaatcatgtgcaaaactgcatatgcaggtataacattattaattcacaaaatttaatgtgttgcacagaaaatttgattactatctcatataagtaaatgtcaactacaacatcttggtattgcgaaaaaatgtgttaactactagcatgattatagttgcacaaaatcataattaaagttgcacgaattaataaccaaagttgcacaaacattaaaaaatggcgactgtaggaataggaaggtgcaatttttgcatataaaagtaacaaactggatagatatggcattatattattcgaccgcccacatttccaagctcaccagcaaaatcaaaaacttagcagaaggaaatgtactcttcttggcctgcagcaagctcctccccctgtagatccaacgctccctgaaaacaaaattgtagtgagctattacatctgagcatacaatcagtctgaagttgtgcttgtttataaccaaaattaggaaaaaaatcataaagtagtcagctaaaaaagaattagttgcatgatttattaattgaaaattgcatatatttataacataacttgcgcgaaatgtatagtattagttgattttgctatttggactatgctgctggggtgtagatggttgaagcggaaaaacacagtaaatgaaaaaaagagacacacttgatgtcatgtgtttatgcgaaaaaaaagatacaacatgaaaagtagtatgggttgcaaaaagcaaaaacatatgaaaagttggacaaaaaaaatttataaaccaaacttgtagagacttaacctagaagttgcccatgtgtaaccaatcaaaccAaaaaaaaaaactctcgatgtcctgataggctgctaagccacatgttaaactgtgacaaaaaaaagaagtagtgccaaattcaaacaataccatttgcatcttgttgctttttgagaattcgtgcaaaggttgaaatcatgtgcaaactgcatatgcaggtataacattattaattcacaaaatttaatgtgttgcacagaaaatttgattactatctcatatgagtaaatgtcaactacaacatcttggtattgcgaaaaattgtgttaactattagcatgattatagttgcacaaaatcataattaaagttgcacgaattaataaccaaagttgcacaacattaaaaaatggcgactgtaggaataggaaggtgcaatttttgcaaataaaagtaacaaactggatagatatgacattatattattcgaccgcccacatttccaagctcaccagcaaaatcaaaaaacttagcagaaggaaatgtactcttcttcgcctgcaacaagctcctcccccgtagatccaacgctcc
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| CDS seq | atggcaagtgacaggacatcatcagatgatgaatgttcatcaaatagcaagtcggacaacaaagtggcagattctgattatgccaactctatttcagaagaggaagaaaccagtgattctgacaaatacataacaaaaaaagatctcgtcagcacattaaaagatctggatcgatcaaaaggaaaagagctaggacagacaaaccacacacaaaacatgaataaatctagaagtgcagagtccccaaaaccaagaagcagactaaacatcacatacttttccaatttgattgaagggctcagcaacgagcaaaggttaattattgagaattctgcttttggttctcttctaaactttcaaaggtgtgctataccactatcttttgtcaaatggatagctagtcacactgatgtcagctgctcagatatagttgtcaatgggagatccataccaatcaacccaaacaccaccaacttcatacttggtatcccaaatggaggtttagagatcaagaatgacaagggtgtgaacaaactatcagaagatgatgtcctacgttgtttcatggtggttgcactatcaacctttctttgccccaactcagacactcaccccagcccaaaataccttgaacctctgattaatatcaagtccagctcaaagtggaactggtcaaagtttgtttatgaatggcttatgacatacatagccaagttccaaaaggagagtaaatcaaaggaacaaacatcaaaaacccttggtggctgcggacacttacttgcttcactgccacctgagcaccaggaagaattgcattag
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| Protein seq | MASDRTSSDDECSSNSKSDNKVADSDYANSISEEEETSDSDKYITKKDLVSTLKDLDRSKGKELGQTNHTQNMNKSRSAESPKPRSRLNITYFSNLIEGLSNEQRLIIENSAFGSLLNFQRCAIPLSFVKWIASHTDVSCSDIVVNGRSIPINPNTTNFILGIPNGGLEIKNDKGVNKLSEDDVLRCFMVVALSTFLCPNSDTHPSPKYLEPLINIKSSSKWNWSKFVYEWLMTYIAKFQKESKSKEQTSKTLGGCGHLLASLPPEHQEELH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0014250 | OsKeNa_04g0014250.01 | Chr04 | 19732941 | 19735858 | - | NAM | ||
| CDS seq | atggcaagtgacaggacatcatcagatgatgaatgttcatcaaatagcaagtcggacaacaaagtggcagattctgattatgccaactctatttcagaagaggaagaaaccagtgattctgacaaatacataacaaaaaaagatctcgtcagcacattaaaagatctggatcgatcaaaaggaaaagagctaggacagacaaaccacacacaaaacatgaataaatctagaagtgcagagtccccaaaaccaagaagcagactaaacatcacatacttttccaatttgattgaagggctcagcaacgagcaaaggttaattattgagaattctgcttttggttctcttctaaactttcaaaggtgtgctataccactatcttttgtcaaatggatagctagtcacactgatgtcagctgctcagatatagttgtcaatgggagatccataccaatcaacccaaacaccaccaacttcatacttggtatcccaaatggaggtttagagatcaagaatgacaagggtgtgaacaaactatcagaagatgatgtcctacgttgtttcatggtggttgcactatcaacctttctttgccccaactcagacactcaccccagcccaaaataccttgaacctctgattaatatcaagtccagctcaaagtggaactggtcaaagtttgtttatgaatggcttatgacatacatagccaagttccaaaaggagagtaaatcaaaggaacaaacatcaaaaacccttggtggctgcggacacttacttgcttcactgccacctgagcaccaggaagaattgcattag
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| Protein seq | MASDRTSSDDECSSNSKSDNKVADSDYANSISEEEETSDSDKYITKKDLVSTLKDLDRSKGKELGQTNHTQNMNKSRSAESPKPRSRLNITYFSNLIEGLSNEQRLIIENSAFGSLLNFQRCAIPLSFVKWIASHTDVSCSDIVVNGRSIPINPNTTNFILGIPNGGLEIKNDKGVNKLSEDDVLRCFMVVALSTFLCPNSDTHPSPKYLEPLINIKSSSKWNWSKFVYEWLMTYIAKFQKESKSKEQTSKTLGGCGHLLASLPPEHQEELH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g34830 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013390 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0011540 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0014000 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0020870 | SBH | 0.0 | 0.061020 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0006120 | RBH | 0.000000 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0307400 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010880 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0415300 | SBH | 0.846449 | 0.0107095 | 5.3333765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0020370 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0011130 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0017910 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0013680 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0013870 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G020130 | SBH | 0.0 | 0.408342 | 0.073269 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0010010 | SBH | 0.0 | 0.0 | 0.0 |
