Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0012250 | OGI:04061320 | 11/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:17881439-17884399 | ||||||||
| Gene Symbol | OsSTA123 | ||||||||||
| DNA seq | atggcggcggcggcggaggaggaggagcccgagcaggtgcccatggtgttggtggcgccggggaagctggtgacccccgagcagtttcagcgagcccgagccctaccgcgccagctggcggcggtggcggcgtccccgcggcaaccgcgcccgctcgccatgcagcagcagcagcagcagatgtcgcagtcgatgatcttcgggcggccgtccgcgccggcgccgacgacgctgcaggggttcgggttcgggcgcggcgcaggccctggtgcggcggcggtggcggcgcgttcggcgccgagggggatggggatggcggcggggccgcgtctcgccatgcagcagtcgacgacaacgacgatgatgcagcagcagaagggattcgggttcagcggcgctggaccagcggcggtggcgccttcgccgcgcgggatgacgatggctgtggggccgcgtctcgccgcgcagcagaagcagaggcagcctaccctcgcgccgccgccgccgccgcagcagaatcagggcttcagcggggccggggctggggcgatgggggtgccttcgccgcaggggatggcggtgggaacgcgtctcgccatgcagcagcagcagccgtccatgatccccgcgccgccgacgatgaccacgcagaagcagcaaggaatggtgttcggcggtggcgcagcgggagcggggttagcgcctccttcgccgcgggggacgccaatggcgacggggccgcgtctcctcatgcagcagcagcagccgtcgacgatcctcgcgccgccgccgccgacgccgacgcggcagaaacagcagggaatcgtgttcggcggtggcgcagcagcgggggtggcgcctcctccttcgctgcgggggatgccgatggcgtctgggccgcgtcccgctaggcagccgcagcgcaagcggaagcagcggaccctcgcgccgccgcagcagaagaatcagggcatcggcgtgtccggggccgcggctggagctggagctgcgcccgtgtcttctccgccgagcgggatgttggcggcggtggagatggcgttgggggatatggcggaggacgctcggaaggcgtgcaacccggacatcacgacgccgttcgcctccgtcgaggacgccatcagcaggtacgcgtgcttccccttcgccgatcaatctccctcctcctcctcctcctcctcctcctcctcctcccgtctccgcctcactttctcttcgtagcgttaaactttttctgctggttttttttattagttcttcttcgccgcggtgaacagcaccgagattgatcgctggttcctagttgcgatcgacttgcgtttgcaaggtttcgtccgtgttttaggggattcgggcttgtatgtttaagttttttggtgcagcgaatctgaatatctgatcattcgttagatgttacattctctgaagaggggtttattcagaggatttgagtcgacgccaaacttctagtgcttgcaaatcaatccatgaacaattttaacgaaaaaaacattgaggagtttcagaattgttcgctgggttagttcattaaaacagggaaaagggcacgatcagcaactttgatttttcggtttcatcgtgttctgacgaaatgctttggaatctaatgtttggctaacttcattgtgagaataatccattttgaattaacagggacattgatccttgattaataatactgaataggtgttttggttacgatcaatttctgatagtataatttctatcaccacacattagaacatacagtatgtgatttgaaaccaatgtttcagcatataaatttctgttgtctctgttagaattgtggcatgctaattaatctttacccgtctgatcaccaaaactgtttttatcttctttcgttcatgtctgcattgtcaataatgatgatgtagcacacaattcttaacacttgtccaagactgatgccatcatagtgtcatgtatgtatgttcaccgcatggtatcccaaattcccaatgattcagtgaaattcatatcaatacatataagattgatgctgtcatatatgtatgtatgttcacacttttgatgaaagaaaacactgaaattcatatcaagtattgctgccaatctctgaattctgtattgggccaagaagtttcttatgcgcagttgctttcatccagctaactacactgaaaaaaaaaagaatcatatacagtgagtatgtgtacagtaactatgttgttcatggactgttttaatttgccccgcaggctgcttccatacaacgtgtacgcggagtacgaggaggacgagatctacgtcgaggaccagccgccggcgaaggacaagtcgagcgtgcaggagtgggatgacgaccgcgaagccgaggtgatccgcatggcggaggagttcgagaagctggtgctgacctacaacgtcgccgtccggaagtccggcgccggcgccgcccgcggcgaggagcggctcatggtggagaacctcctgctcgccgacgagcagcgcaagtcggagcacgtcagcgccctcgtccggcagcagcagcagcagctggtggcgctgcagaagcagcagcagcagcaggaggaggcggcgctgcagcggcaacggatgcagcagcagcaagccctgcagcggcggcaactcttcctggagcagcagcagcagcaagcagcgctgcagcagcagctcatgctagagcagcagcagcagcaacagatgatggcagcgctgcaacagcagcagctggcgatcttgttccacgaccagccgcagcaaccggagccgctggggccggcgtactggctggcgcccgtgcatgccgtgccgccgccgccgcagcagcagcaacaaccggaggaGgggcaggcgggtggcgcggccaccgagatggcgccgcagccgttgagggagcttcgtgattcgtgctag
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| CDS seq | atggcggcggcggcggaggaggaggagcccgagcaggtgcccatggtgttggtggcgccggggaagctggtgacccccgagcagtttcagcgagcccgagccctaccgcgccagctggcggcggtggcggcgtccccgcggcaaccgcgcccgctcgccatgcagcagcagcagcagcagatgtcgcagtcgatgatcttcgggcggccgtccgcgccggcgccgacgacgctgcaggggttcgggttcgggcgcggcgcaggccctggtgcggcggcggtggcggcgcgttcggcgccgagggggatggggatggcggcggggccgcgtctcgccatgcagcagtcgacgacaacgacgatgatgcagcagcagaagggattcgggttcagcggcgctggaccagcggcggtggcgccttcgccgcgcgggatgacgatggctgtggggccgcgtctcgccgcgcagcagaagcagaggcagcctaccctcgcgccgccgccgccgccgcagcagaatcagggcttcagcggggccggggctggggcgatgggggtgccttcgccgcaggggatggcggtgggaacgcgtctcgccatgcagcagcagcagccgtccatgatccccgcgccgccgacgatgaccacgcagaagcagcaaggaatggtgttcggcggtggcgcagcgggagcggggttagcgcctccttcgccgcgggggacgccaatggcgacggggccgcgtctcctcatgcagcagcagcagccgtcgacgatcctcgcgccgccgccgccgacgccgacgcggcagaaacagcagggaatcgtgttcggcggtggcgcagcagcgggggtggcgcctcctccttcgctgcgggggatgccgatggcgtctgggccgcgtcccgctaggcagccgcagcgcaagcggaagcagcggaccctcgcgccgccgcagcagaagaatcagggcatcggcgtgtccggggccgcggctggagctggagctgcgcccgtgtcttctccgccgagcgggatgttggcggcggtggagatggcgttgggggatatggcggaggacgctcggaaggcgtgcaacccggacatcacgacgccgttcgcctccgtcgaggacgccatcagcaggtacgcgtgcttccccttcgccgatcaatctccctcctcctcctcctcctcctcctcctcctcctcccgtctccgcctcactttctcttcgctgcttccatacaacgtgtacgcggagtacgaggaggacgagatctacgtcgaggaccagccgccggcgaaggacaagtcgagcgtgcaggagtgggatgacgaccgcgaagccgaggtgatccgcatggcggaggagttcgagaagctggtgctgacctacaacgtcgccgtccggaagtccggcgccggcgccgcccgcggcgaggagcggctcatggtggagaacctcctgctcgccgacgagcagcgcaagtcggagcacgtcagcgccctcgtccggcagcagcagcagcagctggtggcgctgcagaagcagcagcagcagcaggaggaggcggcgctgcagcggcaacggatgcagcagcagcaagccctgcagcggcggcaactcttcctggagcagcagcagcagcaagcagcgctgcagcagcagctcatgctagagcagcagcagcagcaacagatgatggcagcgctgcaacagcagcagctggcgatcttgttccacgaccagccgcagcaaccggagccgctggggccggcgtactggctggcgcccgtgcatgccgtgccgccgccgccgcagcagcagcaacaaccggaggaGgggcaggcgggtggcgcggccaccgagatggcgccgcagccgttgagggagcttcgtgattcgtgctag
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| Protein seq | MAAAAEEEEPEQVPMVLVAPGKLVTPEQFQRARALPRQLAAVAASPRQPRPLAMQQQQQQMSQSMIFGRPSAPAPTTLQGFGFGRGAGPGAAAVAARSAPRGMGMAAGPRLAMQQSTTTTMMQQQKGFGFSGAGPAAVAPSPRGMTMAVGPRLAAQQKQRQPTLAPPPPPQQNQGFSGAGAGAMGVPSPQGMAVGTRLAMQQQQPSMIPAPPTMTTQKQQGMVFGGGAAGAGLAPPSPRGTPMATGPRLLMQQQQPSTILAPPPPTPTRQKQQGIVFGGGAAAGVAPPPSLRGMPMASGPRPARQPQRKRKQRTLAPPQQKNQGIGVSGAAAGAGAAPVSSPPSGMLAAVEMALGDMAEDARKACNPDITTPFASVEDAISRYACFPFADQSPSSSSSSSSSSSRLRLTFSSLLPYNVYAEYEEDEIYVEDQPPAKDKSSVQEWDDDREAEVIRMAEEFEKLVLTYNVAVRKSGAGAARGEERLMVENLLLADEQRKSEHVSALVRQQQQQLVALQKQQQQQEEAALQRQRMQQQQALQRRQLFLEQQQQQAALQQQLMLEQQQQQQMMAALQQQQLAILFHDQPQQPEPLGPAYWLAPVHAVPPPPQQQQQPEEGQAGGAATEMAPQPLRELRDSC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0012250 | OsKeNa_04g0012250.01 | Chr04 | 17881439 | 17884399 | + | NAM | ||
| CDS seq | atggcggcggcggcggaggaggaggagcccgagcaggtgcccatggtgttggtggcgccggggaagctggtgacccccgagcagtttcagcgagcccgagccctaccgcgccagctggcggcggtggcggcgtccccgcggcaaccgcgcccgctcgccatgcagcagcagcagcagcagatgtcgcagtcgatgatcttcgggcggccgtccgcgccggcgccgacgacgctgcaggggttcgggttcgggcgcggcgcaggccctggtgcggcggcggtggcggcgcgttcggcgccgagggggatggggatggcggcggggccgcgtctcgccatgcagcagtcgacgacaacgacgatgatgcagcagcagaagggattcgggttcagcggcgctggaccagcggcggtggcgccttcgccgcgcgggatgacgatggctgtggggccgcgtctcgccgcgcagcagaagcagaggcagcctaccctcgcgccgccgccgccgccgcagcagaatcagggcttcagcggggccggggctggggcgatgggggtgccttcgccgcaggggatggcggtgggaacgcgtctcgccatgcagcagcagcagccgtccatgatccccgcgccgccgacgatgaccacgcagaagcagcaaggaatggtgttcggcggtggcgcagcgggagcggggttagcgcctccttcgccgcgggggacgccaatggcgacggggccgcgtctcctcatgcagcagcagcagccgtcgacgatcctcgcgccgccgccgccgacgccgacgcggcagaaacagcagggaatcgtgttcggcggtggcgcagcagcgggggtggcgcctcctccttcgctgcgggggatgccgatggcgtctgggccgcgtcccgctaggcagccgcagcgcaagcggaagcagcggaccctcgcgccgccgcagcagaagaatcagggcatcggcgtgtccggggccgcggctggagctggagctgcgcccgtgtcttctccgccgagcgggatgttggcggcggtggagatggcgttgggggatatggcggaggacgctcggaaggcgtgcaacccggacatcacgacgccgttcgcctccgtcgaggacgccatcagcaggtacgcgtgcttccccttcgccgatcaatctccctcctcctcctcctcctcctcctcctcctcctcccgtctccgcctcactttctcttcgctgcttccatacaacgtgtacgcggagtacgaggaggacgagatctacgtcgaggaccagccgccggcgaaggacaagtcgagcgtgcaggagtgggatgacgaccgcgaagccgaggtgatccgcatggcggaggagttcgagaagctggtgctgacctacaacgtcgccgtccggaagtccggcgccggcgccgcccgcggcgaggagcggctcatggtggagaacctcctgctcgccgacgagcagcgcaagtcggagcacgtcagcgccctcgtccggcagcagcagcagcagctggtggcgctgcagaagcagcagcagcagcaggaggaggcggcgctgcagcggcaacggatgcagcagcagcaagccctgcagcggcggcaactcttcctggagcagcagcagcagcaagcagcgctgcagcagcagctcatgctagagcagcagcagcagcaacagatgatggcagcgctgcaacagcagcagctggcgatcttgttccacgaccagccgcagcaaccggagccgctggggccggcgtactggctggcgcccgtgcatgccgtgccgccgccgccgcagcagcagcaacaaccggaggaGgggcaggcgggtggcgcggccaccgagatggcgccgcagccgttgagggagcttcgtgattcgtgctag
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| Protein seq | MAAAAEEEEPEQVPMVLVAPGKLVTPEQFQRARALPRQLAAVAASPRQPRPLAMQQQQQQMSQSMIFGRPSAPAPTTLQGFGFGRGAGPGAAAVAARSAPRGMGMAAGPRLAMQQSTTTTMMQQQKGFGFSGAGPAAVAPSPRGMTMAVGPRLAAQQKQRQPTLAPPPPPQQNQGFSGAGAGAMGVPSPQGMAVGTRLAMQQQQPSMIPAPPTMTTQKQQGMVFGGGAAGAGLAPPSPRGTPMATGPRLLMQQQQPSTILAPPPPTPTRQKQQGIVFGGGAAAGVAPPPSLRGMPMASGPRPARQPQRKRKQRTLAPPQQKNQGIGVSGAAAGAGAAPVSSPPSGMLAAVEMALGDMAEDARKACNPDITTPFASVEDAISRYACFPFADQSPSSSSSSSSSSSRLRLTFSSLLPYNVYAEYEEDEIYVEDQPPAKDKSSVQEWDDDREAEVIRMAEEFEKLVLTYNVAVRKSGAGAARGEERLMVENLLLADEQRKSEHVSALVRQQQQQLVALQKQQQQQEEAALQRQRMQQQQALQRRQLFLEQQQQQAALQQQLMLEQQQQQQMMAALQQQQLAILFHDQPQQPEPLGPAYWLAPVHAVPPPPQQQQQPEEGQAGGAATEMAPQPLRELRDSC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0392500 | SBH | 0.0 | 0.0 | 0.489618 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g32160 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0392500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011470 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0012340 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0011950 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011620 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0011860 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0306800 | RBH | 0.053738 | 0.099685 | 0.1272025 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010770 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0303400 | RBH | 0.093692 | 0.067249 | 0.2699105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0011430 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0011020 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0011050 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0011550 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0011780 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G010950 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0010980 | RBH | 0.0 | 0.0 | 0.0 |
