Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0010290 | OGI:04054140 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:15641687-15648613 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagtttggctgcaaggttacggtagtggacatgtactgcagtattctacaggggtgaaaatctgcaaaaatctaagagttagtagggtagcaaaaacaatggtatcaacgggaaaagagaagctaacttaccagtttgcattttgagacattgtagtcaatcctaggctagctagaaactgaatcttctgcatgttccttttctccgtttcttcctagcagtcttattcactcccatgtccctcaacatcaactgttataaTaataaacaggacaaacgaaaattgaactgttaaaatttgttattaacgggacaaacgaaaattgaattgtcgtgctgttgcaattccatttttgtcagtacctttccaatctgttaatgttaatatgacctcgatattcatggtttctatctaggaaaaatgaaagaggaggtaaatttatcatgaagtgcttatgtatcaaaagttttgaagttatgtgacacatcgatatttatgcatgagagtatgaactcctcataataatctcatataatataaatacaccagctatctctagaacagtgacaattcttatttccaaaaatacaccagctatgttgtgaggacctctgtatacacaatatttcttgtatatgtcccactcttaatgttgtcagaatgcttcttcgaattgttctcattcaaattctgctcagaatgtctattccTtttctttggattgtcgtcatgtacaacgaggatctttatattctttcttgcggtggctctcgaaagtgcgacatatagctgaccgtgagagaatactggttcaggtaagtacacgccgacATTtggtatgctctgcccttgtgccttgtttatcgtcatggcaaagctgagcctgaccggaaattgtttccttttaaatcggaacgggaacatctcatgatcagaagggcatagtgggattcaaggcaagagaactcgtgtcctagaatgttgtcctagcacaatttctacatcaatggcatttttctgaaatcctcgcaccaccaaccttgtgccattacaaagtccattagctgggtcgatattcctgagcaatatgataggacaattaattttgagctttagcatgtgtggaggcagtccatatggggtaagagtgttaaggaattttgggggatagtagttatgaggatcatcttccgcactatcaaagctgtgatacaccatctcctccccttgaaagcggtcaatcattttcagatttatgttgtccacacagtcgttccgtgtggataaaatagctcttgatgtgatgtaatttggatcagctaggcaatcattgagcgttggataaacactctccatcaatttatctaggtcactgtcatcccctgtgtatggcacacatatattgtcaggaagatgtatatcaccattatcgttgatctcttcagtgccattaccgatccgtagtagatattctacaaaccaaggatcgttttgtgccctcatgttgcgtaccaattgcaagtgacgcatgcaaccccataagttggacctccgcaatgatgcatctaatatctgaccccttgacccatgtcgtacaatGgggagaacttgtctaaaatcacctccaaacacaaCtgttttcccaccgaatggaaggtttggcttgtccattatgtctcgcatactattatccagtgcctccaccgcttgcctcttagtcatagaggcttcgtcccaaatgatcaacgatgccatttgtagcaacttggctgttccactttgttttgtgaaagtacaaatagccccatcatctatccttagtggtatcttgaatcgagagtgtgcagtccttcctccgggcattatggaagcggcaacaccagaggtagctgtcgcgatagcaatctttccttgttcacgaactgttgcgagcaatgccctgtatagaaaagtttttcctgtgcctcctgggccatctatgaagaataggcctccttcgttgtgatcaactgtagctagaatctcatcgtaggcggccctttgctcggtgttgagggagttgcacaaagctgtgtcctcagggtccaccttgatcatggattcctcaatgatctccttagggacaccatttgtcgtgtcgtgtagcatatcgaccccaggaagaggaaacgaccgtatatctttgcccatggaccgcaacatatccttgatatttattaaaaccatttgttgaaccacgtgtggacactgacaattgcgacgatagtcttcggacatagcctcgaggtgattgttccagagaacacggacgtcgctaggctcacaaaacaccagaattgttgcaaagagtcttcgtagtgaagatggcatttgtaataactcagcttccgtcaagcattcttctagtgtattgtctgcttcgattaaacctcttctctctgcggcttcacggaaggatggtagtatttttccatccactgttcgtaggtcttcataacaggtggcaCctgtcacatggttcaagagaaccctgagatagtatcgttccccttcggttggatgggctaggaccattcttccaacttgaaggatggcagatcttttccTtttttgccaaaatttcttctttttgcctgtctgccaagtatgatgttctggaaaatcttggtacaacatgccatctgcttctttaTTtaacctatttgcttcaaagtatgctgttagcattgtcttttcagcaccatcttgattgagcacctcctggatgtcctgtttgcctcgatacttaaccatgtgcatatttgggagatgaagctgtagttgcatcacagatggatgtaccttgctcaaatcgaatccatatattctccatagtgcttccagaggtgtcacccaccgtgcatccctatactgcctgatctcatcaatgtcatcttctttacctaccccatttacaggcacagattctctctcatgccccttgtaattgtgtttgaataggtacttcacggcctttatacttgagcatacctccacatttatgtggcagttgaacatctgtaggaggtaagggttataaggaactacccacctattgtctagtggacatttttggactatcactgtgcagccgtcgtcgcgtctcctatacactgggtaagagtccttttcttgaatggtagtagcgttgaaaggcttaggataactgttcttgcatgatgagcgattcttcatgcatgggcaatagtgattcaactcaccgcaaggaccatgcatcatatgtttgatgaccattgtatataactctgggtacttactttggttcggaagctctgcggagattactctgtcgtattgctttgaatgtgtgtacttgtactttttagtcatgatcaacaagaagtgagcatgcggtagacccctcttttggaattctacaacataggtataggcctgaactataccaagaattcccttttcgaacagttgtttcttcatctcctctaattttgccttaaaaacacgaacgatgagatctgggcgatcttgaggcgtttgtccaaacttgagctcatgaatgatctcttcccagttggggttgcaggtcattgtgaggaagatatctggctttccatattttcgtactaaagtcattgcatccatgtatcgacgtaatttatctcgaggccctccaataaatgacgaagcaaggactgttcgtttgccaattgcactccctttgttttctccagtattaacgctatccaataggctttggtacaaatctgcccttatctccttttgatgattccatatatagtccaaccgtgagctctcaatcttattgtatgtgtcaactgcaaactgctggagaagacgtccgccatgcaatattgggttaaatatgccaggtctcatttggaacttgtagcagtagtagtctctgacggaaacacacagtctactacctgaatctgcattatattagaagtgaatgacatgtatgataataaatcatcatcttgatgggaaatatatgaaatgctaacctgggtcctcatcactgttgttgcgattctggcgagccttcattatatcttccaccttaacaccaaactttggtatatcggcatgccaccctaattcagctttgggaaagaacagaggatatgacaacggatcatagcatccatagtatgaccggatgccttgtatatcattgttattcccatgtaggattacactcttttcaaatgtctttcgtcgttcgtttccctcgacccacaccgcagccacctctgaacttattggcacattgtacgtcctctgatccaacctttggtcaaggttcagcatcacacggcagtcttcaagattctcgatttgccccaaactcctaaattgctcagcgtatggattaccacgcagaacgttggttaggatgttgactacttcttgatcttgttcatataactcctgtcggcaacggcggtaccgatgttctaggcttggatcatcatcatagaagtataactcgagatgcttagggtctgaaccattcgtaccaaatgaacttatattatggtacatttggccatgagctcgaaacgtgtagaaaccagttttcctcatgtcacttgtttctctgtcaagatgacagtaaagagaagtgaatgagaaatgcccattgaaaaaccttatgttgttgcgaaaatgttgggcgtaggaatcattgctcgtccagagcctcatgagttcaggaggtgtgtcttgatgagctagtctggtttgtccatttctgcagcagaagccctttgtctcatgctcaaacttctttgcgttgcagaattgacaattttccactggttttagcatatgagtgcactgtggtatgttgctatacacgagctcacagggatcagggacgctagagcactcgggtatggcttctacaacctctttgatttctacgtccttgtgtgtctcccaatctgaaatgttttggcggtagacataagtttacgattaacatgataataacaaatggtgacaagattaccttgaccatcaaacatgtcactctcctcattggtgtcatcgtcaaatatgtcttcatcacctacatggaaatcgctaagtgtatatatatgctctacctgaccatattcaaagtaaacctaaatataggtgagcagtaccatcatcatcgatgaataattttgatggatgctctacattgtcggcaccttgatttgttaaacaaatattttctgttgaaagaacatggttagtactataccaaaatatatgtttctcaaaacatgaaacagatgcatatagctagcacactcaccggtatttgttatgctttgctgcttaggagggtctatgctgttggctgtttgagtgcatatcgaaggatcttctcctactgacacagaagtccttgtgtcccatctaattgtgaagctttcattttgacgagataccaatgcttgtctttcgtcatgtgctatatgtttcctatgtaatctagtcggaacttgaggtgacgtatctagcgcaatatacgtaggactctccattgcaatggaatacttgcttggagtgttgcgtcgcaatgcacggttagcaatgacctgttctatcttagctttcttttggtctggtcccatatttctgtatttcatccttgcaagtgcctttttttcttgttttggaattgaacccttatcctggcttgcaatttcttgttctgcttgcccggaatgtgtagcatgcaatggctcctccacattggcaagggcatttaaatctttgttgcgcttataggcttcacgacgcttttttagtttctcctctttctcttggagagtcatttgcgcatatcgctcccgatctctctgtcttcttcgtatatttggatccaaaagtggagatggcgatccaaatgatgtggtaccagcatcaagcatggaagatggagctgttgacaaacacatatataggcaatatagaaagtgttatcaaggtaattgaaagaatagcttgcagaatataattgattctttgtggttactatcttttgtttccttattccagatttaccttgaccatcaaacatatcactctcattggtgtcatcgtcaaatatatcttcatcacctacatggaaatcgttatgtgtatatatatgctcaacctgacaatattcaaagtaaacctaaatatccgtgagtagtaccattaccatcgatgaatacttgtgatggatgctctacattgtcggcaccttgatttgttaaacacatattttctgttgaaagaacatgattagtactataccagaatatatgttcctcaaaacatgaaatagatgtatatagttggcacactaaccggtatttgttatgcttggctccttaggagggtctatgctgttggatgtttgtgtgcatatcgaaggatcttctcctagtgacacagaagttctcgtgtcccatctaattgtgaagctttcattttgacgatataccagtgcttgtctttcttcatgtgctacatttttcctatgtaatctagtcaggacttgaggtgatgtatctagtgcaatatacgtaggactctccatttcaatggaatatttgcttggagtgttgcgtcgtaatgcacgattagcattgacctgttctctcttagctttcttttggtctggtcccatatttctgtatttcatccttgtaggggcgtttttttCttggtttggaattgaatccttgtcctggcttgcaatttcttgttctgcttgcccggaatgtgtagcatgcaatggctcctccacattggcaagggcatttaaatcttttttgcgcttataggcttgacggcgcttttttaatttctcctctttctcttggggagtcat
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| CDS seq | atgactccccaagagaaagaggagaaattaaaaaagcgccgtcaagcctataagcgcaaaaaagatttaaatgcccttgccaatgtggaggagccattgcatgctacacattccgggcaagcagaacaagaaattgcaagccaggacaaggattcaattccaaaccaaGaaaaaaacgcccctacaaggatgaaatacagaaatatgggaccagaccaaaagaaagctaagagagaacaggtcaatgctaatcgtgcattacgacgcaacactccaagcaaatattccattgaaatggagagtcctacgtatattgcactagatacatcacctcaagtcctgactagattacataggaaaaatgtagcacatgaagaaagacaagcactggtatatcgtcaaaatgaaagcttcacaattagatgggacacgagaacttctgtgtcactaggagaagatccttcgatatgcacacaaacatccaacagcatagaccctcctaaggagccaagcataacaaataccgaaaatatgtgtttaacaaatcaaggtgccgacaatgtagagcatccatcacaagtattcatcgatggtgatgaagatatatttgacgatgacaccaatgagagtgatatgtttgatggtcaagctccatcttccatgcttgatgctggtaccacatcatttggatcgccatctccacttttggatccaaatatacgaagaagacagagagatcgggagcgatatgcgcaaatgactctccaagagaaagaggagaaactaaaaaagcgtcgtgaagcctataagcgcaacaaagatttaaatgcccttgccaatgtggaggagccattgcatgctacacattccgggcaagcagaacaagaaattgcaagccaggataagggttcaattccaaaacaagaaaaaaaggcacttgcaaggatgaaatacagaaatatgggaccagaccaaaagaaagctaagatagaacaggtcattgctaaccgtgcattgcgacgcaacactccaagcaagtattccattgcaatggagagtcctacgtatattgcgctagatacgtcacctcaagttccgactagattacataggaaacatatagcacatgacgaaagacaagcattggtatctcgtcaaaatgaaagcttcacaattagatgggacacaaggacttctgtgtcagtaggagaagatccttcgatatgcactcaaacagccaacagcatagaccctcctaagcagcaaagcataacaaataccgattttcacccctgtagaatactgcagtacatgtccactaccgtaaccttgcagccaaactga
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| Protein seq | MTPQEKEEKLKKRRQAYKRKKDLNALANVEEPLHATHSGQAEQEIASQDKDSIPNQEKNAPTRMKYRNMGPDQKKAKREQVNANRALRRNTPSKYSIEMESPTYIALDTSPQVLTRLHRKNVAHEERQALVYRQNESFTIRWDTRTSVSLGEDPSICTQTSNSIDPPKEPSITNTENMCLTNQGADNVEHPSQVFIDGDEDIFDDDTNESDMFDGQAPSSMLDAGTTSFGSPSPLLDPNIRRRQRDRERYAQMTLQEKEEKLKKRREAYKRNKDLNALANVEEPLHATHSGQAEQEIASQDKGSIPKQEKKALARMKYRNMGPDQKKAKIEQVIANRALRRNTPSKYSIAMESPTYIALDTSPQVPTRLHRKHIAHDERQALVSRQNESFTIRWDTRTSVSVGEDPSICTQTANSIDPPKQQSITNTDFHPCRILQYMSTTVTLQPN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0010290 | OsKeNa_04g0010290.01 | Chr04 | 15641687 | 15648613 | - | NAM | ||
| CDS seq | atgactccccaagagaaagaggagaaattaaaaaagcgccgtcaagcctataagcgcaaaaaagatttaaatgcccttgccaatgtggaggagccattgcatgctacacattccgggcaagcagaacaagaaattgcaagccaggacaaggattcaattccaaaccaaGaaaaaaacgcccctacaaggatgaaatacagaaatatgggaccagaccaaaagaaagctaagagagaacaggtcaatgctaatcgtgcattacgacgcaacactccaagcaaatattccattgaaatggagagtcctacgtatattgcactagatacatcacctcaagtcctgactagattacataggaaaaatgtagcacatgaagaaagacaagcactggtatatcgtcaaaatgaaagcttcacaattagatgggacacgagaacttctgtgtcactaggagaagatccttcgatatgcacacaaacatccaacagcatagaccctcctaaggagccaagcataacaaataccgaaaatatgtgtttaacaaatcaaggtgccgacaatgtagagcatccatcacaagtattcatcgatggtgatgaagatatatttgacgatgacaccaatgagagtgatatgtttgatggtcaagctccatcttccatgcttgatgctggtaccacatcatttggatcgccatctccacttttggatccaaatatacgaagaagacagagagatcgggagcgatatgcgcaaatgactctccaagagaaagaggagaaactaaaaaagcgtcgtgaagcctataagcgcaacaaagatttaaatgcccttgccaatgtggaggagccattgcatgctacacattccgggcaagcagaacaagaaattgcaagccaggataagggttcaattccaaaacaagaaaaaaaggcacttgcaaggatgaaatacagaaatatgggaccagaccaaaagaaagctaagatagaacaggtcattgctaaccgtgcattgcgacgcaacactccaagcaagtattccattgcaatggagagtcctacgtatattgcgctagatacgtcacctcaagttccgactagattacataggaaacatatagcacatgacgaaagacaagcattggtatctcgtcaaaatgaaagcttcacaattagatgggacacaaggacttctgtgtcagtaggagaagatccttcgatatgcactcaaacagccaacagcatagaccctcctaagcagcaaagcataacaaataccgattttcacccctgtagaatactgcagtacatgtccactaccgtaaccttgcagccaaactga
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| Protein seq | MTPQEKEEKLKKRRQAYKRKKDLNALANVEEPLHATHSGQAEQEIASQDKDSIPNQEKNAPTRMKYRNMGPDQKKAKREQVNANRALRRNTPSKYSIEMESPTYIALDTSPQVLTRLHRKNVAHEERQALVYRQNESFTIRWDTRTSVSLGEDPSICTQTSNSIDPPKEPSITNTENMCLTNQGADNVEHPSQVFIDGDEDIFDDDTNESDMFDGQAPSSMLDAGTTSFGSPSPLLDPNIRRRQRDRERYAQMTLQEKEEKLKKRREAYKRNKDLNALANVEEPLHATHSGQAEQEIASQDKGSIPKQEKKALARMKYRNMGPDQKKAKIEQVIANRALRRNTPSKYSIAMESPTYIALDTSPQVPTRLHRKHIAHDERQALVSRQNESFTIRWDTRTSVSVGEDPSICTQTANSIDPPKQQSITNTDFHPCRILQYMSTTVTLQPN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.772426 | 0.395948 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g28820 | RBH | 0.0 | 0.0 | 0.188584 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009550 | RBH | 0.0 | 0.000000 | 1.734165 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0010100 | RBH | 0.0 | 0.000000 | 3.276389 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009760 | RBH | 0.0 | 0.012805 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009900 | RBH | 0.0 | 5.356198 | 5.492556 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0270000 | RBH | 0.9083755 | 1.7648185 | 8.711784 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0009020 | RBH | 0.0 | 0.000000 | 0.749998 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0266500 | RBH | 0.990093 | 1.1385515 | 13.773383 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0009610 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0009190 | RBH | 0.0 | 5.826082 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0009250 | RBH | 0.0 | 5.587105 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0009760 | RBH | 0.0 | 0.351497 | 0.171287 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009870 | RBH | 0.0 | 3.541500 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G008990 | RBH | 0.0 | 2.078304 | 0.489951 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0009010 | RBH | 0.0 | 1.020659 | 2.258779 |
