Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0010020 | OGI:04053340 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:15317384-15320924 | ||||||||
| Gene Symbol | AN1, An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1 | ||||||||||
| DNA seq | attgttcaaagaacatttcttgcatgcatgatgattccagtactcttgatacaaaacaatgtccacaaaaaaggaaggtgtttttcaaaatcctctccaatctctacatacatagtacatacatccccatgcatgccaaatcctacaaagccactaccactactaacatcactagcacaatcctcctcttttttttttctacagttagggcatgcaaccagcacacacaaaggtcacacagctcccctgccttgccatttccagacatactacacatatactcctctgtcctacaagcatcacaacatcaaaacaagttctttgcctaaacaatatgacactgcatctggaaaaagttaagccttggaaaaccttctccttccctgtgcagctgggccccacctgcagtgacagacggcagagggggtagaaaagcggaaaaaaagatagtggcttttgtaggatcaagccaaagccatgatcaaagccacacacacagtcacacacaacatcctcttctttcttctttgatggcaatgattgtgagcttgggtttgctgctgctggtgatgctgatgctgcaggatgggagcagaaaagcggagtacacgtacggcggctgggcgtatgtacagaaggagaggtcgccgcatttattatggctcggccttcatgtggtttactgtcgtcccctgctgctgctgcccccctgcgcccaattaccaccaacagcgaaactcaacaaacttggacaaacaaacctaccgtactggagtagtatgaccaccaccactccactactgtagtccagtaaaaaaaataatcttatttttgaacttttttttaaaaaaaaattgagtatttttaaaaattcatgtataatttgttagggatgtaaggagatgtggtggttcgatttcacttaccgtagaagccgtgaagaggaggatggtgcggcaatggcgagggagagggtgccatcgttgcgattggaccgtcttggctgagtccggtggtggctcccatttgcatagcggtgtggaggtcgagctcccagcagttgtagacggtgaatggatcagcagtggcgggtgagccggtgtaggagaacgcggtggtggtggtcggatcgcttgacgggtatgcgggtactggcatatggctcatctgaaaatgataccccgagtgcggcgaatataacatttgcaaattgagggacaatatcgtaatagtactctgtgtcaactgtctctctagatcagataaaagtgttttcagatgctatacttacatctttggaaggcatgtaatggctgtcaaagtccagctgaggattcatggtcgccaacttcatggacaaaaactgtgagacacaccaatgtcaaaatttagcttttgggcttaatttcatacataacttcaaataagagctagctaggacgacagaaggagaacacaacaacatttttctccaacatatttattgtcattaaaacaagttcatttagcacactattaaagcaaatgcttgcattggtacctcgacctgacgctgcagcgactgcacatagttgatgatctcgtccagcatgagagccttgccggtgatctgcacaccgcaacattcacatttatttgctaactaattaacaaaacaaaaacaataaacaatcatctagaaaaaaactcagcaataaattttaaaaaggtaagaaaagttatcaaccaaatttaaaattcaacccaaatttgaccaccggcggtggcatcactaccgtggcaataattggggcaactaaaataatcgtgcgcaccacctaaaccaccaggaccttgcaattgattagccggtttgattagtttaagtacagagcaagagcctctcagattattaactaatcaattattattatatcctcttggaccactgggagcttaacttaggagtactactagtagcttacatgcattacggtcaaaattactactggctgcatagactaaccaccgcagttagtgctcacactttcggtacaaaaaagattattatttttttacttaattttatctatcccagtagcaaaaagtccaactcctagctctaggcaatactgaaactaaagtaattgtatatatattaaacttaattattgccacacaggcaagtccgttttgtacgttaggttactattcccccttaatgcgcgtcctcgaaaatacatttttgaccactaattttcagtactgccccgtataacggaattctaatattacaaattagtacaactgcttttgatattaattaaactctaaaactagaattttaaattttgagtgtaatttggagcgggAaaaaaaagaagccacttgtttggatacatgaatttggaggaaatttaagaatgagattagccgctggagtgtgtttgtgttcatactaccttgttgcagcctggcacgagcgactgcagaagcttcatcctctcgcttatcctctccctcctcacctaccaatattaaacaaaacacaaagctaattaaaattttaataataattaagcgtccttgcaactcaataagtagagcaattagtaacacggtgcgcaattagggggtgccctcgcattgtgattaattttgggattagtgtagtacttgcaaaaaagctaattaggatttaattaattaggtgattaattaccctctcggcgaggctatggctatcggtggcttgcccccgcctcgccctcacatggatgtagtctttggctggctccggcttctcctccgccgcgtcggcgtcggcgtcgccgtcgtctccggcgccggcggcgaccttggaccgcttcgggctcgcgttcgtcgtcgccgtggcctgcattgtgcatGgggttggtgatcagtggagatcggagaagtgatggagagcggtggtcggagtatggtgtcgtaccgtgggtaaggatgaggacgaggccttgggcttcgccgacgacttgcgcttccgggcggcggcggcggcggagggcttggatggttggtcggcggcggcggcggtggtggggttcatgtcggcctcggagctgtccaatgccgcggcggcgccgccgagggacttgctgctggagacacgggacagcctgccgccggcggcggcgtagccacggaacggcggcggcggggcggcgcgcggcggggagctgagcggcgtgctgtagcaggagttgttggcgctggcgccgccgtggctgcagatgctcccaagccggccgatgaggtcgccgatggccgccatctcgtcgccgccgccgccgccctgcggagacgacacgagggagctgagcgcggagtcgaactccgccgcggccgccgccggcgccatcatcatcatctgctcggcggccgccactgcccacggcggcatcatcgtcatcgtcccgtacgccgcggcgggcagcaacgcgcccgcaccgcccgtgccggcgccggacgaggaggtggagaagtagtcgccggcggggaagaagtgctcgtcggccat
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| CDS seq | atggccgacgagcacttcttccccgccggcgactacttctccacctcctcgtccggcgccggcacgggcggtgcgggcgcgttgctgcccgccgcggcgtacgggacgatgacgatgatgccgccgtgggcagtggcggccgccgagcagatgatgatgatggcgccggcggcggccgcggcggagttcgactccgcgctcagctccctcgtgtcgtctccgcagggcggcggcggcggcgacgagatggcggccatcggcgacctcatcggccggcttgggagcatctgcagccacggcggcgccagcgccaacaactcctgctacagcacgccgctcagctccccgccgcgcgccgccccgccgccgccgttccgtggctacgccgccgccggcggcaggctgtcccgtgtctccagcagcaagtccctcggcggcgccgccgcggcattggacagctccgaggccgacatgaaccccaccaccgccgccgccgccgaccaaccatccaagccctccgccgccgccgccgcccggaagcgcaagtcgtcggcgaagcccaaggcctcgtcctcatccttacccacggccacggcgacgacgaacgcgagcccgaagcggtccaaggtcgccgccggcgccggagacgacggcgacgccgacgccgacgcggcggaggagaagccggagccagccaaagactacatccatgtgagggcgaggcgggggcaagccaccgatagccatagcctcgccgagagggtgaggagggagaggataagcgagaggatgaagcttctgcagtcgctcgtgccaggctgcaacaagatcaccggcaaggctctcatgctggacgagatcatcaactatgtgcagtcgctgcagcgtcaggtcgagatgagccatatgccagtacccgcatacccgtcaagcgatccgaccaccaccaccgcgttctcctacaccggctcacccgccactgctgatccattcaccgtctacaactgctgggagctcgacctccacaccgctatgcaaatgggagccaccaccggactcagccaagacggtccaatcgcaacgatggcaccctctccctcgccattgccgcaccatcctcctcttcacggcttctacggggggcagcagcagcaggggacgacagtaaaccacatgaaggccgagccataa
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| Protein seq | MADEHFFPAGDYFSTSSSGAGTGGAGALLPAAAYGTMTMMPPWAVAAAEQMMMMAPAAAAAEFDSALSSLVSSPQGGGGGDEMAAIGDLIGRLGSICSHGGASANNSCYSTPLSSPPRAAPPPPFRGYAAAGGRLSRVSSSKSLGGAAAALDSSEADMNPTTAAAADQPSKPSAAAAARKRKSSAKPKASSSSLPTATATTNASPKRSKVAAGAGDDGDADADAAEEKPEPAKDYIHVRARRGQATDSHSLAERVRRERISERMKLLQSLVPGCNKITGKALMLDEIINYVQSLQRQVEMSHMPVPAYPSSDPTTTTAFSYTGSPATADPFTVYNCWELDLHTAMQMGATTGLSQDGPIATMAPSPSPLPHHPPLHGFYGGQQQQGTTVNHMKAEP |
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| Function | Transcription factor bHLH62 [UniProtKB/Swiss-Prot:Q9SRT2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0010020 | OsKeNa_04g0010020.01 | Chr04 | 15317384 | 15320924 | - | NAM | ||
| CDS seq | atggccgacgagcacttcttccccgccggcgactacttctccacctcctcgtccggcgccggcacgggcggtgcgggcgcgttgctgcccgccgcggcgtacgggacgatgacgatgatgccgccgtgggcagtggcggccgccgagcagatgatgatgatggcgccggcggcggccgcggcggagttcgactccgcgctcagctccctcgtgtcgtctccgcagggcggcggcggcggcgacgagatggcggccatcggcgacctcatcggccggcttgggagcatctgcagccacggcggcgccagcgccaacaactcctgctacagcacgccgctcagctccccgccgcgcgccgccccgccgccgccgttccgtggctacgccgccgccggcggcaggctgtcccgtgtctccagcagcaagtccctcggcggcgccgccgcggcattggacagctccgaggccgacatgaaccccaccaccgccgccgccgccgaccaaccatccaagccctccgccgccgccgccgcccggaagcgcaagtcgtcggcgaagcccaaggcctcgtcctcatccttacccacggccacggcgacgacgaacgcgagcccgaagcggtccaaggtcgccgccggcgccggagacgacggcgacgccgacgccgacgcggcggaggagaagccggagccagccaaagactacatccatgtgagggcgaggcgggggcaagccaccgatagccatagcctcgccgagagggtgaggagggagaggataagcgagaggatgaagcttctgcagtcgctcgtgccaggctgcaacaagatcaccggcaaggctctcatgctggacgagatcatcaactatgtgcagtcgctgcagcgtcaggtcgagatgagccatatgccagtacccgcatacccgtcaagcgatccgaccaccaccaccgcgttctcctacaccggctcacccgccactgctgatccattcaccgtctacaactgctgggagctcgacctccacaccgctatgcaaatgggagccaccaccggactcagccaagacggtccaatcgcaacgatggcaccctctccctcgccattgccgcaccatcctcctcttcacggcttctacggggggcagcagcagcaggggacgacagtaaaccacatgaaggccgagccataa
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| Protein seq | MADEHFFPAGDYFSTSSSGAGTGGAGALLPAAAYGTMTMMPPWAVAAAEQMMMMAPAAAAAEFDSALSSLVSSPQGGGGGDEMAAIGDLIGRLGSICSHGGASANNSCYSTPLSSPPRAAPPPPFRGYAAAGGRLSRVSSSKSLGGAAAALDSSEADMNPTTAAAADQPSKPSAAAAARKRKSSAKPKASSSSLPTATATTNASPKRSKVAAGAGDDGDADADAAEEKPEPAKDYIHVRARRGQATDSHSLAERVRRERISERMKLLQSLVPGCNKITGKALMLDEIINYVQSLQRQVEMSHMPVPAYPSSDPTTTTAFSYTGSPATADPFTVYNCWELDLHTAMQMGATTGLSQDGPIATMAPSPSPLPHHPPLHGFYGGQQQQGTTVNHMKAEP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.936286 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0350700 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g28280 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0350700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009250 | RBH | 0.0 | 2.971727 | 3.621541 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0009810 | RBH | 0.0 | 13.308137 | 2.475607 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009470 | RBH | 0.036178 | 0.275931 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009610 | RBH | 0.0 | 3.426775 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0266000 | RBH | 0.485931 | 4.1210425 | 0.1090795 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008730 | RBH | 0.0 | 0.714375 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0262400 | RBH | 0.6499995 | 2.1655225 | 0.8080225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0009260 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0008890 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008940 | RBH | 0.0 | 9.715514 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0009450 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009600 | RBH | 0.0 | 2.493183 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G008770 | RBH | 0.0 | 1.856068 | 0.968012 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008800 | RBH | 0.0 | 5.210278 | 0.425658 |
