Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0007020 | OGI:04040780 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:10995985-11000708 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctgagtccgtgctccttatcgcactcggcaaaatcacggctgcactgggtgcagatgttctgcagcaaattcggaacctcttgccaacagaagtgtcgctatttgggcagctcactgggcgcatgaaccggatcaaaaaagagttgtttgtgattcatgcattcctgtcacaggccgacttgcagggtgttcagaccagaacagttgaagcatgggtggatgctgttaggaaggttgccttggatgttgaagacgtaattgatgagtacgttcatctattaggccagcaaaagtgtggatggttcacttcagtcaaaggaaaatttggaagatctcaacacctttgtttgtggcttcaaattgttgaacggctgaaggagattgagagagacctttggcacatctcggagatgaaagacagatggattcataccagtactgagctattgggcagaggcaatttggatggtgactatcattgtgcccttccatattcacctcagtgtggttacttcattaattcagatgatatgattgggtttggtaactacaaaatgttgttgatcaattggttagcacaaaaagattcgagtacttcggtaatggttattttgggaatggggggaataggcaagaccacacttgcttcaaatgtttatgagactgaaaagagtaggtatgattgtagtgcctggatagctacatcccaggtatataacatttgctctttgttgagaacgacaatcagacattgtttcaagaacacaaaagaaatcccacctaatgttgacataatggatcaacacagcctcattgttgaacttcgagaattcttaaaaggacgaagctgcttggttgttattgatgatgtctgggatcatgtatgtattggtactattctcaaggcgttttctcacaatgagcacagaaacaaaattatcataaccactagggaaattcagatagcaaagtttgtggatcaaagctatatgattcaaatggaaaaattagaggagagtgaagcatgggaccttttctgcagaaaggctttcctaaatgagaaagaaaagtcatgtcctgaagagttagtcggtattgcaaaggatattatgaagtggtgttgtggtctacaattagccctagttactatgggtggactcctgtccctgagagaaaaaaacaatagcgaatggaaacgtgtctacaacaacttgctttgcagttttgacaatgatccaggccttaatcatttgaaacatgtgctcaaccttagctaccgttatctaccagaatatctcaaagattgctttctgttctgcagcatattcctagagaacagtatgatcaagcggaagcacctgataagactttggattgcagaaggctttgtggaggacagggcaggaactacaatggaagagctagcgcatgattacttatcagaactcattcgtcgaggaatgttgcaggtcatgaagaggaacgagaatggcagggtgaagcactgtcggatgcattgcatcgtacgagaggtcacaatctcgctatgcaaatcgaggggtttccacatgatatggggcaacaaagaatcaacatctgcatatgaggcacgtcgttttgctatacatggaattaatcagtccagttccgaaatcctaactgatctaccacatgtacgcacattcctttcgtttgatgtcacaatgtctgacaccttgctgtcaagaatagtatgcagctctagatatttgacagtgttagatgtatcaggggcattatttatcaaggaagttccgaaacaagttgtatctctcttcaacctgcgttacttaggcttacgtaggactaaggtgaagaagcttcctagttctttgggaaggcttgcaaatctacaaacactggatcttcatcacagttgcataagtagactgcccagtggaataaccaaactagaaaagcttcgacatttgtttgtcgagacagtgaaggactccagttttcaaagtctgaatgcttgtagcggtgttggtgctcctagcggtatatgcaagcttaagtctttgcagacattgttcacaatagaggcaagcaagtgttttgtgcaacaggcaaacaaactggttcagctaaaaagcttccggatcacaaaagttagaggatctcattgctcagtgctgtctgagtcaatcaaaagaatgaagcagttggtgtacttagatatcttagctagtgacgaggaggaaatacttgacctggacatcagtccaccgccaagcacccttgagaagctttgcctgaggggaaaactgaatgattctaatctgcactctttcttcaattccttttgcaacaatctcacatgtctttttcttggttggagtagtctaagcagagaccccctcccattgttgtcccagatgacaaatcttgcattcctctggctccaacgggcattcgatggcccgcagttgaggtttgttctgggatggttcccaagattgagaaggctgcatctgaaagacatggaccatcttcattctttggagattgaagaaggttcagtggtcagtttggaggtgctggagatgactggtcttaatgagttgaatgatattcccggaggtattttctttctgaacaatcttcaagaggtgtacctcgattcaatgcacaaggacttcattaaccaccagagcgagggtgaaaatgttgaagatttcccaagattcatctacggccacagccccaacttttggagaggggaagatgtggcatattgtcaccaatacacatagagttcttcatccaaatttccacaaactagttcagacaagaaacaaccggtgagtttttaccgcatgatgatgctattatttttcatattctaacaagggtaacacaatcgggttacaatgatacacagttccacaaacgtacctaaacaactgattcaatcagaacttcagaagaggtaaatggagaaaatatagcagatagaatagaatgagagaaagaaccagccatttccctctctctcagagtatgttagttatacacgacaaagaagctgttctatatacaccagtgcaatacttagaattcgtccagttggtttactcgttttaaatttcaagaacatcccctgaagctgagatatttatttcaatttttagaattattaaaccacttcaaacaattctaaaaaaaatcagttctaaaatggaggatttagaaactacacaagtttgctctgtagtgaaatgaaactaatttatccctcagatttttattttatttttcaaacacagtgtttactggccaatataattatatttcatttcaattgtacaaaatttgtataggttagaaatactacctagcgcaagtgataatttgtttcaacttgtttgaaatcatttattgattttatgaaatttggaaagtagtccagacttttattctggatacgtccaaggttgaaaggtttttttgacttccgtgaggtggaatttcaaggttatgacataattaattttcctatttttccaaatatattgactgtggttttgatgtgacctaagttacagaattttcctagaggcacaaacgagaaaaaaatagtctaaatctacactaattcagtccacacaatggtctaccagactacctttaacggtcaacactgcactacaccagtgacatttgacaatgatacagctagtgcacacagacagctattacaatcgaaccggtgatcgaactgttaggacacttgttcactggctcattggttaaaccgatcaaacaaccggtttaaagcagttcaaatagatgtgtgttacagtagactctgtggaaacaaggaggtttgggttcgactccttcagttcagcagctttttcctatattctctaactccacgtgacgcccatgcacactgcagcttctgctcctccagcggtcgaaccacctccggtccagttcaattggttttcaccagatcggccgatgctgttctaataactaagcacacagactgatgcttcctactttaacaattttatttttcatgtttgtattcttcaaaagttgatgtgaaatgccgtttctttttatgtgatagaagtgaaaacccttgtatataaaatctatttgatatagacaattgagattaaaggcctccataccctaaccccgatcgagggatagtttgagcaccagatagcagaaaggagatgaacctcctctcttcaatagaaatagcaatgctcccactaattctcgtggctttactacagacacctctggcaactgcatctgtgagaaggcaagggtcaatcacagcctcccgtccatggcgatgcttgtgccagctgccccaagagttgcgggaacctgagcatccactacccatttggcatcggagcaggctgttctggcagcccgacttatcttacctgcgaccactgctggagatgcatcggagaaagaggcattagtgttggttggtaaccctttttttagtcctgttgtgtaatcggtatttttagtcctaattatacaatgtagaattaaaaactatctttaataccggttggtgttattaaccggtactaaagataattttttattttttttactgatggttgtttgctgtacatatatgtatgtatgtatgtactccctttgtttcatattataagactttttctagcattgc
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| CDS seq | atggctgagtccgtgctccttatcgcactcggcaaaatcacggctgcactgggtgcagatgttctgcagcaaattcggaacctcttgccaacagaagtgtcgctatttgggcagctcactgggcgcatgaaccggatcaaaaaagagttgtttgtgattcatgcattcctgtcacaggccgacttgcagggtgttcagaccagaacagttgaagcatgggtggatgctgttaggaaggttgccttggatgttgaagacgtaattgatgagtacgttcatctattaggccagcaaaagtgtggatggttcacttcagtcaaaggaaaatttggaagatctcaacacctttgtttgtggcttcaaattgttgaacggctgaaggagattgagagagacctttggcacatctcggagatgaaagacagatggattcataccagtactgagctattgggcagaggcaatttggatggtgactatcattgtgcccttccatattcacctcagtgtggttacttcattaattcagatgatatgattgggtttggtaactacaaaatgttgttgatcaattggttagcacaaaaagattcgagtacttcggtaatggttattttgggaatggggggaataggcaagaccacacttgcttcaaatgtttatgagactgaaaagagtaggtatgattgtagtgcctggatagctacatcccaggtatataacatttgctctttgttgagaacgacaatcagacattgtttcaagaacacaaaagaaatcccacctaatgttgacataatggatcaacacagcctcattgttgaacttcgagaattcttaaaaggacgaagctgcttggttgttattgatgatgtctgggatcatgtatgtattggtactattctcaaggcgttttctcacaatgagcacagaaacaaaattatcataaccactagggaaattcagatagcaaagtttgtggatcaaagctatatgattcaaatggaaaaattagaggagagtgaagcatgggaccttttctgcagaaaggctttcctaaatgagaaagaaaagtcatgtcctgaagagttagtcggtattgcaaaggatattatgaagtggtgttgtggtctacaattagccctagttactatgggtggactcctgtccctgagagaaaaaaacaatagcgaatggaaacgtgtctacaacaacttgctttgcagttttgacaatgatccaggccttaatcatttgaaacatgtgctcaaccttagctaccgttatctaccagaatatctcaaagattgctttctgttctgcagcatattcctagagaacagtatgatcaagcggaagcacctgataagactttggattgcagaaggctttgtggaggacagggcaggaactacaatggaagagctagcgcatgattacttatcagaactcattcgtcgaggaatgttgcaggtcatgaagaggaacgagaatggcagggtgaagcactgtcggatgcattgcatcgtacgagaggtcacaatctcgctatgcaaatcgaggggtttccacatgatatggggcaacaaagaatcaacatctgcatatgaggcacgtcgttttgctatacatggaattaatcagtccagttccgaaatcctaactgatctaccacatgtacgcacattcctttcgtttgatgtcacaatgtctgacaccttgctgtcaagaatagtatgcagctctagatatttgacagtgttagatgtatcaggggcattatttatcaaggaagttccgaaacaagttgtatctctcttcaacctgcgttacttaggcttacgtaggactaaggtgaagaagcttcctagttctttgggaaggcttgcaaatctacaaacactggatcttcatcacagttgcataagtagactgcccagtggaataaccaaactagaaaagcttcgacatttgtttgtcgagacagtgaaggactccagttttcaaagtctgaatgcttgtagcggtgttggtgctcctagcggtatatgcaagcttaagtctttgcagacattgttcacaatagaggcaagcaagtgttttgtgcaacaggcaaacaaactggttcagctaaaaagcttccggatcacaaaagttagaggatctcattgctcagtgctgtctgagtcaatcaaaagaatgaagcagttggtgtacttagatatcttagctagtgacgaggaggaaatacttgacctggacatcagtccaccgccaagcacccttgagaagctttgcctgaggggaaaactgaatgattctaatctgcactctttcttcaattccttttgcaacaatctcacatgtctttttcttggttggagtagtctaagcagagaccccctcccattgttgtcccagatgacaaatcttgcattcctctggctccaacgggcattcgatggcccgcagttgaggtttgttctgggatggttcccaagattgagaaggctgcatctgaaagacatggaccatcttcattctttggagattgaagaaggttcagtggtcagtttggaggtgctggagatgactggtcttaatgagttgaatgatattcccggaggtattttctttctgaacaatcttcaagaggtgtacctcgattcaatgcacaaggacttcattaaccaccagagcgagggtgaaaatgttgaagatttcccaagattcatctacggccacagccccaacttttggagaggggaagatgtggcatattgtcaccaatacacatag
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| Protein seq | MAESVLLIALGKITAALGADVLQQIRNLLPTEVSLFGQLTGRMNRIKKELFVIHAFLSQADLQGVQTRTVEAWVDAVRKVALDVEDVIDEYVHLLGQQKCGWFTSVKGKFGRSQHLCLWLQIVERLKEIERDLWHISEMKDRWIHTSTELLGRGNLDGDYHCALPYSPQCGYFINSDDMIGFGNYKMLLINWLAQKDSSTSVMVILGMGGIGKTTLASNVYETEKSRYDCSAWIATSQVYNICSLLRTTIRHCFKNTKEIPPNVDIMDQHSLIVELREFLKGRSCLVVIDDVWDHVCIGTILKAFSHNEHRNKIIITTREIQIAKFVDQSYMIQMEKLEESEAWDLFCRKAFLNEKEKSCPEELVGIAKDIMKWCCGLQLALVTMGGLLSLREKNNSEWKRVYNNLLCSFDNDPGLNHLKHVLNLSYRYLPEYLKDCFLFCSIFLENSMIKRKHLIRLWIAEGFVEDRAGTTMEELAHDYLSELIRRGMLQVMKRNENGRVKHCRMHCIVREVTISLCKSRGFHMIWGNKESTSAYEARRFAIHGINQSSSEILTDLPHVRTFLSFDVTMSDTLLSRIVCSSRYLTVLDVSGALFIKEVPKQVVSLFNLRYLGLRRTKVKKLPSSLGRLANLQTLDLHHSCISRLPSGITKLEKLRHLFVETVKDSSFQSLNACSGVGAPSGICKLKSLQTLFTIEASKCFVQQANKLVQLKSFRITKVRGSHCSVLSESIKRMKQLVYLDILASDEEEILDLDISPPPSTLEKLCLRGKLNDSNLHSFFNSFCNNLTCLFLGWSSLSRDPLPLLSQMTNLAFLWLQRAFDGPQLRFVLGWFPRLRRLHLKDMDHLHSLEIEEGSVVSLEVLEMTGLNELNDIPGGIFFLNNLQEVYLDSMHKDFINHQSEGENVEDFPRFIYGHSPNFWRGEDVAYCHQYT |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0007020 | OsKeNa_04g0007020.01 | Chr04 | 10995985 | 10998783 | + | NAM | ||
| CDS seq | atggctgagtccgtgctccttatcgcactcggcaaaatcacggctgcactgggtgcagatgttctgcagcaaattcggaacctcttgccaacagaagtgtcgctatttgggcagctcactgggcgcatgaaccggatcaaaaaagagttgtttgtgattcatgcattcctgtcacaggccgacttgcagggtgttcagaccagaacagttgaagcatgggtggatgctgttaggaaggttgccttggatgttgaagacgtaattgatgagtacgttcatctattaggccagcaaaagtgtggatggttcacttcagtcaaaggaaaatttggaagatctcaacacctttgtttgtggcttcaaattgttgaacggctgaaggagattgagagagacctttggcacatctcggagatgaaagacagatggattcataccagtactgagctattgggcagaggcaatttggatggtgactatcattgtgcccttccatattcacctcagtgtggttacttcattaattcagatgatatgattgggtttggtaactacaaaatgttgttgatcaattggttagcacaaaaagattcgagtacttcggtaatggttattttgggaatggggggaataggcaagaccacacttgcttcaaatgtttatgagactgaaaagagtaggtatgattgtagtgcctggatagctacatcccaggtatataacatttgctctttgttgagaacgacaatcagacattgtttcaagaacacaaaagaaatcccacctaatgttgacataatggatcaacacagcctcattgttgaacttcgagaattcttaaaaggacgaagctgcttggttgttattgatgatgtctgggatcatgtatgtattggtactattctcaaggcgttttctcacaatgagcacagaaacaaaattatcataaccactagggaaattcagatagcaaagtttgtggatcaaagctatatgattcaaatggaaaaattagaggagagtgaagcatgggaccttttctgcagaaaggctttcctaaatgagaaagaaaagtcatgtcctgaagagttagtcggtattgcaaaggatattatgaagtggtgttgtggtctacaattagccctagttactatgggtggactcctgtccctgagagaaaaaaacaatagcgaatggaaacgtgtctacaacaacttgctttgcagttttgacaatgatccaggccttaatcatttgaaacatgtgctcaaccttagctaccgttatctaccagaatatctcaaagattgctttctgttctgcagcatattcctagagaacagtatgatcaagcggaagcacctgataagactttggattgcagaaggctttgtggaggacagggcaggaactacaatggaagagctagcgcatgattacttatcagaactcattcgtcgaggaatgttgcaggtcatgaagaggaacgagaatggcagggtgaagcactgtcggatgcattgcatcgtacgagaggtcacaatctcgctatgcaaatcgaggggtttccacatgatatggggcaacaaagaatcaacatctgcatatgaggcacgtcgttttgctatacatggaattaatcagtccagttccgaaatcctaactgatctaccacatgtacgcacattcctttcgtttgatgtcacaatgtctgacaccttgctgtcaagaatagtatgcagctctagatatttgacagtgttagatgtatcaggggcattatttatcaaggaagttccgaaacaagttgtatctctcttcaacctgcgttacttaggcttacgtaggactaaggtgaagaagcttcctagttctttgggaaggcttgcaaatctacaaacactggatcttcatcacagttgcataagtagactgcccagtggaataaccaaactagaaaagcttcgacatttgtttgtcgagacagtgaaggactccagttttcaaagtctgaatgcttgtagcggtgttggtgctcctagcggtatatgcaagcttaagtctttgcagacattgttcacaatagaggcaagcaagtgttttgtgcaacaggcaaacaaactggttcagctaaaaagcttccggatcacaaaagttagaggatctcattgctcagtgctgtctgagtcaatcaaaagaatgaagcagttggtgtacttagatatcttagctagtgacgaggaggaaatacttgacctggacatcagtccaccgccaagcacccttgagaagctttgcctgaggggaaaactgaatgattctaatctgcactctttcttcaattccttttgcaacaatctcacatgtctttttcttggttggagtagtctaagcagagaccccctcccattgttgtcccagatgacaaatcttgcattcctctggctccaacgggcattcgatggcccgcagttgaggtttgttctgggatggttcccaagattgagaaggctgcatctgaaagacatggaccatcttcattctttggagattgaagaaggttcagtggtcagtttggaggtgctggagatgactggtcttaatgagttgaatgatattcccggaggtattttctttctgaacaatcttcaagaggtgtacctcgattcaatgcacaaggacttcattaaccaccagagcgagggtgaaaatgttgaagatttcccaagattcatctacggccacagccccaacttttggagaggggaagatgtggcatattgtcaccaatacacatag
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| Protein seq | MAESVLLIALGKITAALGADVLQQIRNLLPTEVSLFGQLTGRMNRIKKELFVIHAFLSQADLQGVQTRTVEAWVDAVRKVALDVEDVIDEYVHLLGQQKCGWFTSVKGKFGRSQHLCLWLQIVERLKEIERDLWHISEMKDRWIHTSTELLGRGNLDGDYHCALPYSPQCGYFINSDDMIGFGNYKMLLINWLAQKDSSTSVMVILGMGGIGKTTLASNVYETEKSRYDCSAWIATSQVYNICSLLRTTIRHCFKNTKEIPPNVDIMDQHSLIVELREFLKGRSCLVVIDDVWDHVCIGTILKAFSHNEHRNKIIITTREIQIAKFVDQSYMIQMEKLEESEAWDLFCRKAFLNEKEKSCPEELVGIAKDIMKWCCGLQLALVTMGGLLSLREKNNSEWKRVYNNLLCSFDNDPGLNHLKHVLNLSYRYLPEYLKDCFLFCSIFLENSMIKRKHLIRLWIAEGFVEDRAGTTMEELAHDYLSELIRRGMLQVMKRNENGRVKHCRMHCIVREVTISLCKSRGFHMIWGNKESTSAYEARRFAIHGINQSSSEILTDLPHVRTFLSFDVTMSDTLLSRIVCSSRYLTVLDVSGALFIKEVPKQVVSLFNLRYLGLRRTKVKKLPSSLGRLANLQTLDLHHSCISRLPSGITKLEKLRHLFVETVKDSSFQSLNACSGVGAPSGICKLKSLQTLFTIEASKCFVQQANKLVQLKSFRITKVRGSHCSVLSESIKRMKQLVYLDILASDEEEILDLDISPPPSTLEKLCLRGKLNDSNLHSFFNSFCNNLTCLFLGWSSLSRDPLPLLSQMTNLAFLWLQRAFDGPQLRFVLGWFPRLRRLHLKDMDHLHSLEIEEGSVVSLEVLEMTGLNELNDIPGGIFFLNNLQEVYLDSMHKDFINHQSEGENVEDFPRFIYGHSPNFWRGEDVAYCHQYT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0007020 | OsKeNa_04g0007020.02 | Chr04 | 10998653 | 11000708 | + | IsoSeq | ||
| CDS seq | atggttgtttgctgtacatatatgtatgtatgtatgtactccctttgtttcata |
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| Protein seq | MVVCCTYMYVCMYSLCFI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.045897 | 1.152632 | 0.655219 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0548100 | SBH | 0.152494 | 0.195225 | 0.559072 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g21890 | RBH | 0.665647 | 0.060164 | 0.054697 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0219600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0006410 | RBH | 0.113945 | 2.318978 | 0.679751 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0006820 | RBH | 0.375659 | 3.977330 | 1.293965 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0006440 | RBH | 0.025478 | 0.060152 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0006870 | RBH | 1.307775 | 2.275384 | 3.407129 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0006670 | RBH | 0.0 | 0.114610 | 0.100748 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0207700 | RBH | 1.133257 | 5.3772125 | 8.63377 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0006440 | RBH | 0.118195 | 0.480977 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0006750 | RBH | 0.031073 | 6.329325 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0006730 | RBH | 3.366534 | 22.379658 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0006620 | RBH | 0.116553 | 0.170439 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0006880 | RBH | 0.077240 | 1.468202 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G006560 | RBH | 0.420107 | 0.0 | 0.121737 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0006680 | RBH | 0.0 | 9.858097 | 0.560853 |
