Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0004700 | OGI:04022970 | 10/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:6702204-6705899 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atctatcaacttcagaaatttttgtaccataaatagactcatctacttctatgtcatttctacccagggaaactcctagcttagaaatatttgcaagtagagttttgttaggcaaagatagaattgaacttgtagggttgaatttgttacctgctaccacttcgaggttatgaatcttttttagaaactctgctcggtttgccaccggtgcatccccgtttgccattgccttctgtcattcactttgacgtgttggtgtaggatgaatcagtcgacgagagcgacgtttagcttcttgagagggacgcttcccacctgcttctgcttgcacctttgcttcagcgatgatggtgcgtgctgcatcaagttgtgccccatcggcagccaactcaattaccgtgttaacacctgcagtcccgacatccaaaatcatcgagtcttgtgatgtggttacctctgtcacctcctgattcaccattggagcagcgtccattgtgccagttgacgaggacggcaagacctgagttgcatcgaccgacaaagttggagcatcggcagccaccaagcccaccttgtccgactcgatctcctgggctgcgtcgtccatgacaacaggagcagccaatgacacagttacagccccttctagtgttgatgctcccgtcgaagcctccgagagagatgcacaacctgccggtgccatctctcccgcatccgtcaatgtcgttgtaaattcttcctctgagatggcagccacactatccggtacagccaaagacaaagcagccacctcttcatttgccaaggtcacgttctgtccggtagttgggatctgcattgagctctcttctggagccttgttcatcaccgtttccaagctagaagccacgcaaattgttggcaaaacctcctcagcttgctgctctactgcagaatcatcaacaacagtgagcaaccctgcgatcgctgaaacacaatgtgaattaagctgagagtctgtaactgagcctcctcttaatgacattgaggatgacgcagcttcattttttagtcgctttggattccgatcttccataatgacatcatcatcgttcctcttttgttcactgtcatcacgctgatcatcttcgtctaacttttcctttcctttcgattcctcctcgggcatttctggttcaaagaaaatctcatacccatggttacggaacacaatgtacacactgggcggcaaagttgctaaatcatccaccgcaacctgcattcttacgaccccgtgtttccgaagataaaccatatccaccatcgttgtatttccaatgacagaaccgacagcatgaaggctaagaaagtccctaatttcatatggaacaccatagacacgaaaccatgtcttcttcaggacaaactttgcctcaatctcctgttcccatttgttaaataacaaatcaacaccaaaatcaaagctacggactctgccaaccctatgcaatctatctaattcaattgtagagggaaactgaacaacaaatgtatcctgtgccgtctcctttacttcaaatctgacgggaaccaaccggcgcagctcagtggtgagattatcaattgaaatgtgaccattctctacgcgaactgttgcagtcttactaaactcccttggtcttcctgataccttagctggtgtaggaatcatgaagaagccaccaccctctacaccccagccacacaattgcagtgggtttaggagcgagaagaagtgggcaattagagcatccctagcagctcatccatatttgatcctccaaatacctatatggatggtcatccaaaaaagattcatcattcatattcctttcaactctaacagatcatctatattacatcatccatatcccaccctcctatattttaataatatcttccaactaactttatatttatatttttaagggatatattttgaactactaaattttaactgcattttttatcgcaataatattttgaaatgagtaaattttaaccgatatagttttaatgaataattttttaattgatgatgtatttacatgaatggacttctaatccacattagcgctagcgactgaccttatcctctcgcttaaaaaaaagaaaaacagaaaagaacggaccttctctcgctAaaaaaaaataaagaccctaccttatcctctcgcgggtgcgtgcgtgcggcagacggaggggcgatgcgggacggcgcgggcggcgctgcagggcagggtggtgccgagctgaacaacggtgcgggctactgggcgacggcggaaggtggcgtccgcgcgcatggtgacgacggcggcggcggaggatgcaagcggcggccgcgagcatggcgacggcggcggcggcggaggaggcaagcagcggccgcgcgcatcgcgagggcgccagcggtcagccacgggcagggcgacggctacagacggcggtggcgcggctccagatctggtacacctctcgatctccactctcactccaccctccctctccaccgtccgctgactcaccttcaccggccggcgacgacggcgatggaggggaggtcgcgctggaggtgaggtcgcgtcgcggaaaagtctggatgggggcgggagaggcggctgttgcaaaatggcgtgaggagagaaacactccatttttgcttcttctctctcctaatttggcgcatccgccccttttggagggcctgttagcgtatctgctcgagctgatttttccccttctatacggcaaatgaaggacggatgaccggttagaggaactgctggggatgctcttaggtgccaaatgacctgggtcttcacatatgtcacaaataactgcattacaatcagtaacacggaaaaaaattctctgcggcagtgccgcacgccacaacccgtgcgacaccccgcagaatagcgacgcgtgtttaatctcctgctgcaggccgagccctctttggttggtgtcgagccgagtccatttcttccgctgcttattggagtcaagctgtccagggcacatgaatagtttttgtattaggtctgtaagttttcgggttcctatgtaagggtggtgtcttgcctctctttttatttctgcaatatagaccaaatgattttacatgctgtataaatatgatgtaaacgtgccaacctaatttcaacaccaggtgtgcttttaagttgtcaatcaacacatgtaatttttacttgtcaggttgggtatagcgctagaattggtttgtatgttgcaaactttcaggctttcatgttgttggtattcctatatggctatatagctccgcacctgtacaattaaaaattttcggagctactactctatgccaataaaagacaaactctagctacgaacctagacacaagctaggattggactttttttttttttgaacggagggagtactccttaaatgttccgtgatttgttatgtcatcaaaatgtaatttctgagcacccgagacatcttgataaagtttatgtaaaggatttatatattacactagaaaaatctccagcatattatcagcaacagttgcataaaaaagctctattgaaaaatgaaattattcaggcttcatgtgtagccagtagatgcggctcggtagcattttcaacgagctgacaggtgtgtgggtgtagtataccaggcat
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| CDS seq | atgcctgaaataaaaagagaggcaagacaccacccttacataggaacccgaaaacttacagacctaatacaaaaactattcatgtgccctggacagcttgactccaataagcagcggaagaaatggactcggctcgacaccaaccaaagagggctcggcctgcagcaggagattaaacacgcgtcgctattctgcggggtgtcgcacgggttgtggcgtgcggcactgccgcagagaatttttttccgtgtatcaggaagaccaagggagtttagtaagactgcaacagttcgcgtagagaatggtcacatttcaattgataatctcaccactgagctgcgccggttggttcccgtcagatttgaagtaaaggagacggcacaggatacatttgttgttcagtttccctctacaattgaattagatagattgcatagggttggcagagtccgtagctttgattttggtgttgatttgttatttaacaaatgggaacaggagattgaggcaaagtttgtcctgaagaagacatggtttcgtgtctatggtgttccatatgaaattagggactttcttagccttcatgctgtcggttctgtcattggaaatacaacgatggtggatatggtttatcttcggaaacacggggtcgtaagaatgcaggttgcggtggatgatttagcaactttgccgcccagtgtgtacattgtgttccgtaaccatgggtatgagattttctttgaaccagaaatgcccgaggaggaatcgaaaggaaaggaaaagttagacgaagatgatcagcgtgatgacagtgaacaaaagaggaacgatgatgatgtcattatggaagatcggaatccaaagcgactaaaaaatgaagctgcgtcatcctcaatgtcattaagaggaggctcagttacagactctcagcttaattcacattgtgtttcagcgatcgcagggttgctcactgttgttgatgattctgcagtagagcagcaagctgaggaggttttgccaacaatttgcgtggcttctagcttggaaacggtgatgaacaaggctccagaagagagctcaatgcagatcccaactaccggacagaacgtgaccttggcaaatgaagaggtggctgctttgtctttggctgtaccggatagtgtggctgccatctcagaggaagaatttacaacgacattgacggatgcgggagagatggcaccggcaggttgtgcatctctctcggaggcttcgacgggagcatcaacactagaaggggctgtaactgtgtcattggctgctcctgttgtcatggacgacgcagcccaggagatcgagtcggacaaggtgggcttggtggctgccgatgctccaactttgtcggtcgatgcaactcaggtcttgccgtcctcgtcaactggcacaatggacgctgctccaatggtgaatcaggaggtgacagaggtaaccacatcacaagactcgatgattttggatgtcgggactgcaggtgttaacacggtaattgagttggctgccgatggggcacaacttgatgcagcacgcaccatcatcgctgaagcaaaggtgcaagcagaagcaggtgggaagcgtccctctcaagaagctaaacgtcgctctcgtcgactgattcatcctacaccaacacgtcaaagtgaatga
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| Protein seq | MPEIKREARHHPYIGTRKLTDLIQKLFMCPGQLDSNKQRKKWTRLDTNQRGLGLQQEIKHASLFCGVSHGLWRAALPQRIFFRVSGRPREFSKTATVRVENGHISIDNLTTELRRLVPVRFEVKETAQDTFVVQFPSTIELDRLHRVGRVRSFDFGVDLLFNKWEQEIEAKFVLKKTWFRVYGVPYEIRDFLSLHAVGSVIGNTTMVDMVYLRKHGVVRMQVAVDDLATLPPSVYIVFRNHGYEIFFEPEMPEEESKGKEKLDEDDQRDDSEQKRNDDDVIMEDRNPKRLKNEAASSSMSLRGGSVTDSQLNSHCVSAIAGLLTVVDDSAVEQQAEEVLPTICVASSLETVMNKAPEESSMQIPTTGQNVTLANEEVAALSLAVPDSVAAISEEEFTTTLTDAGEMAPAGCASLSEASTGASTLEGAVTVSLAAPVVMDDAAQEIESDKVGLVAADAPTLSVDATQVLPSSSTGTMDAAPMVNQEVTEVTTSQDSMILDVGTAGVNTVIELAADGAQLDAARTIIAEAKVQAEAGGKRPSQEAKRRSRRLIHPTPTRQSE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0004700 | OsKeNa_04g0004700.01 | Chr04 | 6702204 | 6705899 | - | NAM | ||
| CDS seq | atgcctgaaataaaaagagaggcaagacaccacccttacataggaacccgaaaacttacagacctaatacaaaaactattcatgtgccctggacagcttgactccaataagcagcggaagaaatggactcggctcgacaccaaccaaagagggctcggcctgcagcaggagattaaacacgcgtcgctattctgcggggtgtcgcacgggttgtggcgtgcggcactgccgcagagaatttttttccgtgtatcaggaagaccaagggagtttagtaagactgcaacagttcgcgtagagaatggtcacatttcaattgataatctcaccactgagctgcgccggttggttcccgtcagatttgaagtaaaggagacggcacaggatacatttgttgttcagtttccctctacaattgaattagatagattgcatagggttggcagagtccgtagctttgattttggtgttgatttgttatttaacaaatgggaacaggagattgaggcaaagtttgtcctgaagaagacatggtttcgtgtctatggtgttccatatgaaattagggactttcttagccttcatgctgtcggttctgtcattggaaatacaacgatggtggatatggtttatcttcggaaacacggggtcgtaagaatgcaggttgcggtggatgatttagcaactttgccgcccagtgtgtacattgtgttccgtaaccatgggtatgagattttctttgaaccagaaatgcccgaggaggaatcgaaaggaaaggaaaagttagacgaagatgatcagcgtgatgacagtgaacaaaagaggaacgatgatgatgtcattatggaagatcggaatccaaagcgactaaaaaatgaagctgcgtcatcctcaatgtcattaagaggaggctcagttacagactctcagcttaattcacattgtgtttcagcgatcgcagggttgctcactgttgttgatgattctgcagtagagcagcaagctgaggaggttttgccaacaatttgcgtggcttctagcttggaaacggtgatgaacaaggctccagaagagagctcaatgcagatcccaactaccggacagaacgtgaccttggcaaatgaagaggtggctgctttgtctttggctgtaccggatagtgtggctgccatctcagaggaagaatttacaacgacattgacggatgcgggagagatggcaccggcaggttgtgcatctctctcggaggcttcgacgggagcatcaacactagaaggggctgtaactgtgtcattggctgctcctgttgtcatggacgacgcagcccaggagatcgagtcggacaaggtgggcttggtggctgccgatgctccaactttgtcggtcgatgcaactcaggtcttgccgtcctcgtcaactggcacaatggacgctgctccaatggtgaatcaggaggtgacagaggtaaccacatcacaagactcgatgattttggatgtcgggactgcaggtgttaacacggtaattgagttggctgccgatggggcacaacttgatgcagcacgcaccatcatcgctgaagcaaaggtgcaagcagaagcaggtgggaagcgtccctctcaagaagctaaacgtcgctctcgtcgactgattcatcctacaccaacacgtcaaagtgaatga
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| Protein seq | MPEIKREARHHPYIGTRKLTDLIQKLFMCPGQLDSNKQRKKWTRLDTNQRGLGLQQEIKHASLFCGVSHGLWRAALPQRIFFRVSGRPREFSKTATVRVENGHISIDNLTTELRRLVPVRFEVKETAQDTFVVQFPSTIELDRLHRVGRVRSFDFGVDLLFNKWEQEIEAKFVLKKTWFRVYGVPYEIRDFLSLHAVGSVIGNTTMVDMVYLRKHGVVRMQVAVDDLATLPPSVYIVFRNHGYEIFFEPEMPEEESKGKEKLDEDDQRDDSEQKRNDDDVIMEDRNPKRLKNEAASSSMSLRGGSVTDSQLNSHCVSAIAGLLTVVDDSAVEQQAEEVLPTICVASSLETVMNKAPEESSMQIPTTGQNVTLANEEVAALSLAVPDSVAAISEEEFTTTLTDAGEMAPAGCASLSEASTGASTLEGAVTVSLAAPVVMDDAAQEIESDKVGLVAADAPTLSVDATQVLPSSSTGTMDAAPMVNQEVTEVTTSQDSMILDVGTAGVNTVIELAADGAQLDAARTIIAEAKVQAEAGGKRPSQEAKRRSRRLIHPTPTRQSE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.152235 | 0.0 | 0.332681 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0204300 | RBH | 1.284468 | 2.967251 | 1.832926 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g12744 | SBH | 1.193216 | 0.839137 | 0.169287 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0204300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0004260 | RBH | 1.019791 | 0.0 | 2.057728 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0004310 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0004210 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0089800 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0108500 | RBH | 0.00694 | 0 | 0.0528015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0004390 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0001970 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0004230 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001990 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
