Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0004350 | OGI:04020730 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:6202997-6204659 | ||||||||
| Gene Symbol | OsFbox185, Os_F0197 | ||||||||||
| DNA seq | gcatgtcaacattatgctcaagcttcttatatatttcaaattcaaaaggataacccatggttccctctattaaaccatggaaactatatgtctacatccaatcaactagttttcaaggcaggaactaaggcagcaggatatacattcgagttaattactagaagataaattcattgtagaatcagaaaatttagaccaatcaggctaagatgcggcacaccattacacccagaagatctacagctccagtcaccacataagacaatcattctttggtccgattaaaaattaccattgccaaatatctgcaaaatataaccccctactcaaactcctcaagtccttgtccccttctacactctgcaaaatagaccattgtataagacatggcaagcttcctaaaaatatttgttcagaaaaacaatctactactacttgcagataggaattggtttaaatagcctacatacttgcaggggtaagcaaaacaatgacggagcagcaccagcgtatgctacagaccacagaaaaactgtggctgtcccacatgagcaccaccatgcctcccgaagaacgcatggttgacaaggctttctttcaaacaatgcctcatagcacatggaagcatgttatccaaatggattttctcccgcaaattccccttggtgtcacacagaaacaagaacacagagctctgaatgtagaccagaatttccccacgatgacatacgattttccatgaaaagaaaccttcccttgcaatgctcctcattctcgccacgggcaatttaacgtggtacctcaacgaccagacctccgtctcatagtcctgaagaacccagagtttggccataccttgagtcacaatgccaatgccaagcataccaccatcaatctcaaccaaatgtgcaccataaccatcaacatttggagaaaccatccacctgaaggactcagccaccgtgtcgaaaacgagtattgcgtcttccggtttacggaggtgccagtgcaggcagccatggagcaacacgggtgggagaaagccgatctcatcaatccagaacacgggtgggagaaatgcctcaggtaatccaatgcgccgcggcttctccgacgagccgaccgcgaggatgcagacggcatcgggatacttccatttgaggacgcggtactcgccgtcgccggaagatgggtgcgggtacagggtgacctggctgccgccgccggtgagggctgggactggcgtcacctggcgcgtggccgggttgcagatgtagaaggcgcggccggagacgaagaggaggagcccgtcgcaggaggagtggatcttgaagctctggtgttggcggtagtcgctgaagccgaggacgcggcggcgctcggcggggtgccggatgaggtcgacggaatccacggcggcgtcggcgtcggcggcggcgccgctcctccacctcgcgcagccgaagacgagcgggcgcggcggctggtggcggtggtgggcgaggaggaagtcggcggaggtggccaggcggcgccagtcgcggcacacggcgtggcagcggaggagccccctcgccgggaggcgggccaagatctcccacacgagctcgtcggggaggacgggaccggccgcggcgctgagtagtctcgcccttttcgccat
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| CDS seq | atggcgaaaagggcgagactactcagcgccgcggccggtcccgtcctccccgacgagctcgtgtgggagatcttggcccgcctcccggcgagggggctcctccgctgccacgccgtgtgccgcgactggcgccgcctggccacctccgccgacttcctcctcgcccaccaccgccaccagccgccgcgcccgctcgtcttcggctgcgcgaggtggaggagcggcgccgccgccgacgccgacgccgccgtggattccgtcgacctcatccggcaccccgccgagcgccgccgcgtcctcggcttcagcgactaccgccaacaccagagcttcaagatccactcctcctgcgacgggctcctcctcttcgtctccggccgcgccttctacatctgcaacccggccacgcgccaggtgacgccagtcccagccctcaccggcggcggcagccaggtcaccctgtacccgcacccatcttccggcgacggcgagtaccgcgtcctcaaatggaagtatcccgatgccgtctgcatcctcgcggtcggctcgtcggagaagccgcggcgcattggattacctgaggcatttctcccacccgtgttctggattgatgagatcggctttctcccacccgtgttgctccatggctgcctgcactggcacctccgtaaaccggaagacgcaatactcgttttcgacacggtggctgagtccttcaggtggatggtttctccaaatgttgatggttatggtgcacatttggttgagattgatggtggtatgcttggcattggcattgtgactcaaggtatggccaaactctgggttcttcaggactatgagacggaggtctggtcgttgaggtaccacgttaaattgcccgtggcgagaatgaggagcattgcaagggaaggtttcttttcatggaaaatcgtatgtcatcgtggggaaattctggtctacattcagagctctgtgttcttgtttctgtgtgacaccaaggggaatttgcgggagaaaatccatttggataacatgcttccatgtgctatgaggcattgtttgaaagaaagccttgtcaaccatgcgttcttcgggaggcatggtggtgctcatgtgggacagccacagtttttctgtggtctgtag
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| Protein seq | MAKRARLLSAAAGPVLPDELVWEILARLPARGLLRCHAVCRDWRRLATSADFLLAHHRHQPPRPLVFGCARWRSGAAADADAAVDSVDLIRHPAERRRVLGFSDYRQHQSFKIHSSCDGLLLFVSGRAFYICNPATRQVTPVPALTGGGSQVTLYPHPSSGDGEYRVLKWKYPDAVCILAVGSSEKPRRIGLPEAFLPPVFWIDEIGFLPPVLLHGCLHWHLRKPEDAILVFDTVAESFRWMVSPNVDGYGAHLVEIDGGMLGIGIVTQGMAKLWVLQDYETEVWSLRYHVKLPVARMRSIAREGFFSWKIVCHRGEILVYIQSSVFLFLCDTKGNLREKIHLDNMLPCAMRHCLKESLVNHAFFGRHGGAHVGQPQFFCGL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0004350 | OsKeNa_04g0004350.01 | Chr04 | 6202997 | 6204659 | - | NAM | ||
| CDS seq | atggcgaaaagggcgagactactcagcgccgcggccggtcccgtcctccccgacgagctcgtgtgggagatcttggcccgcctcccggcgagggggctcctccgctgccacgccgtgtgccgcgactggcgccgcctggccacctccgccgacttcctcctcgcccaccaccgccaccagccgccgcgcccgctcgtcttcggctgcgcgaggtggaggagcggcgccgccgccgacgccgacgccgccgtggattccgtcgacctcatccggcaccccgccgagcgccgccgcgtcctcggcttcagcgactaccgccaacaccagagcttcaagatccactcctcctgcgacgggctcctcctcttcgtctccggccgcgccttctacatctgcaacccggccacgcgccaggtgacgccagtcccagccctcaccggcggcggcagccaggtcaccctgtacccgcacccatcttccggcgacggcgagtaccgcgtcctcaaatggaagtatcccgatgccgtctgcatcctcgcggtcggctcgtcggagaagccgcggcgcattggattacctgaggcatttctcccacccgtgttctggattgatgagatcggctttctcccacccgtgttgctccatggctgcctgcactggcacctccgtaaaccggaagacgcaatactcgttttcgacacggtggctgagtccttcaggtggatggtttctccaaatgttgatggttatggtgcacatttggttgagattgatggtggtatgcttggcattggcattgtgactcaaggtatggccaaactctgggttcttcaggactatgagacggaggtctggtcgttgaggtaccacgttaaattgcccgtggcgagaatgaggagcattgcaagggaaggtttcttttcatggaaaatcgtatgtcatcgtggggaaattctggtctacattcagagctctgtgttcttgtttctgtgtgacaccaaggggaatttgcgggagaaaatccatttggataacatgcttccatgtgctatgaggcattgtttgaaagaaagccttgtcaaccatgcgttcttcgggaggcatggtggtgctcatgtgggacagccacagtttttctgtggtctgtag
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| Protein seq | MAKRARLLSAAAGPVLPDELVWEILARLPARGLLRCHAVCRDWRRLATSADFLLAHHRHQPPRPLVFGCARWRSGAAADADAAVDSVDLIRHPAERRRVLGFSDYRQHQSFKIHSSCDGLLLFVSGRAFYICNPATRQVTPVPALTGGGSQVTLYPHPSSGDGEYRVLKWKYPDAVCILAVGSSEKPRRIGLPEAFLPPVFWIDEIGFLPPVLLHGCLHWHLRKPEDAILVFDTVAESFRWMVSPNVDGYGAHLVEIDGGMLGIGIVTQGMAKLWVLQDYETEVWSLRYHVKLPVARMRSIAREGFFSWKIVCHRGEILVYIQSSVFLFLCDTKGNLREKIHLDNMLPCAMRHCLKESLVNHAFFGRHGGAHVGQPQFFCGL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.204074 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0195100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g11890 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0195100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0003830 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0004230 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0003870 | RBH | 0.0 | 0.0 | 1.247947 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0003980 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003850 | RBH | 0.000000 | 0.0 | 0.728110 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0095500 | RBH | 0.6018225 | 0.5249895 | 2.1707545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0003980 | RBH | 0.0 | 0.180231 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0099200 | RBH | 0.411071 | 0.57052 | 3.6958005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0003810 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0004050 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0003850 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0003740 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0003910 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G004090 | RBH | 0.0 | 1.145433 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0003840 | RBH | 0.0 | 0.0 | 0.0 |
