Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0002740 | OGI:04015350 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:4125391-4130341 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tagagcaaggaacagttaatcatactactgtgcaatgtatgcaaaactactttacacaaaggataaaactagaaaatggtacatgtgataccttcaaggaagcatcggtaaaaatgctaccgctgttctctttttcaccttgtggatataatgaatccatgtgattgttcacatatcagtgccactacactctatcaaaacttgcctcccaacttcaatcgcaagcttcggtcaatcttccgcagcggtaagcaacttgttcaaatgattggcttgcacttaagcatttacatttccgtctgcataagaaatcagtggatgaaagcattcatctgatcagaaacttttcgcaaagagagaagtgtattatcaaactcaatcggcttctctatatctgatcagaaaccattggcaatggaagaaattaattgccaaatttcagtaagcttctttatatcgcgcagaaaccattggcaatgagagaagttaaacaccaaaactccaatccgcctatttaaaccttatccaagacactcaacagcaagagaagtgaactactaaacttcaatcatcttcattaaagctgatcagaaactattggttgagatccatgcagtgtgtactttcgatgcaaagggtatacttggaactgtcatacttagttgcattatgaccaaggcggttacccaagaatccaaattctgtctcatcctcatcatcactatctatgttatttggagtcatcctattctgataacacctccgtctaagtagaaaacaattaaaatagtagctcacaagttctttcctaccctttgactgaaaaagcatatggagacgcttccagaaattccttcctgaagatggggcattaagctgcacgcaagccttgaaatttgcttcctctttatctgtccaggaaagtgcgatttcctctcccatacgatcaaatccccatgcatagaaagctgaatcaagttcacgtcgcagttgaagtctcctttctgcaacatgaaacctaacacattctacagatcctggaaggttgcagccacaaacaccttctctaccttttccaacagggttacaaaaatatgataatttcctgttaccattttccagaggccagacctttgtgcccaaccatttcctggtttctgcattatcatagcttacaggcaactcaccagtccattgtggtacttgtgcttggaactcagagcccactggtattttgttcctctgctgactcgtaaaaagccagttgtcagagttatgatgtttcctactctcatatttcgcttgtccaataatgttgttctcttgctccattccaattgaaggcacatttatgttttctacaacatttatcaattcattaatatctgaaccagcctgtggaatgacaagttgaatctttttactgcatttttcttgtgtgtcaattccagtagtgctggaactcatgcagcacttgcaatccattggaaatatttcctgcaaacgacagaaaacaaaaaaggggtatattaggtgctaggacaatatcatgcacaaaaatcacaacgtcatctatgcaatggtgttttcggattttgcatttcctttggcaaccaaaaactgaatgagttcaagaaattaatagtttgataacaaaatttaactaaacttaatttgatttacaaagtaaactacaatattttttacatctgcatttccatgctaaaaacaaaagaacaacagcgcagcacagtaaatcagcaaacacaaattgacccttagaattggcttacaaatcgatttatatactgtagttcctttggaaaccaaacaaaaactaaatttgtggttccattctaattaaaatctaattctatttgaagatttaaggaaattgtaggatgcagaaggatttatgcataaactaggagttttaggtatgatggtcaatgtagactaaatttaagagcctttatacttctttgtcagtagatatcgaagttcttgatcatccaagatgatgattcaaacaaagcttttgggaaatcagagtgtgcagaaggatttgctatgcagtaggagttggttttgccataaaccaaaacattcagaggatataattatcattaatctgatataatctgtaatttgtatccatgatggcatttggatcagtaatctacaaaaataaatatggttcctaagtactgttgctaaactgaacagtatccccaaattgaatagtgaaccaaagttggtagtggaggggtcagagtctgtggattacgctgcagtctgcaccatttttgcagaaatagaagtctagtaatagcaagatgtaaggaaagagtatgttttagtgccatgaagattataaaaggataggccccaaattatttgtaacagcattacgatgtgtcagtgagttgtagcaaaaacagttttgtttgaacaaatcattacagccaccaacacaaatattcaaagcaataattatatgagacccccataggcctcaattcctaagctaaaagatcataaatgaatacattgattacagtatataaatgagattatacaagaggaaaccctagaagctggaacaaaaacaaggaatcatatgatcagtcttaggtggagtcaaaaatataatccatctgcctaggagagagaattagttagtatgagttagtcataaaaaagaactctgtatagcagccgaatgctattattattcctcaaagttatctttaataatattgcagatcgacccagagtattgctgttgcctgtgcgaaacatggttcaagctgaattctgtactgttctgtaaattccacagtgatgaatgccagagaaagataagaagcagagaaattcaagaaaagcttagctaagattgaatacctaagaaagatatagcatgtgaattataagttgcctatctatgggagtttccacaatttcatttcattataactaaaaaagctttaaaagtatcattgatagttttcccatcagaaaaagcttccaaaatagaatttggagtgctgcttattgctgttttccacaactcgtttcgatgtaaaaaaacttggatttatttgttttttatgcaatgcatatcctttgaaattcagacacttaaccattctcacaaactcaattgaatttatgaatcaatcagaaCccaaagaaaacctttaaactcctctaaattttattattgtgaaggtatcaagttatcaaagagcgaaaaggtatgcatcttcttatcaagattactatagaacatataaatagatatcaaataatcaagtattggaggtacgattagaattatcattttagcatgtatcaacaattatagccaactcccgactcaggtagcaacttatgtcgagtatctaactatggctcagaagggaggaattgacggaaataatgttttcgcctaggctttctgttggcattatactatcttccaaacaatcatatcagtgtaatctctaagaaatacaaatgtactctccaaattacactaaaatgccaaatatcacaaagatgcgtcaataagttggtctattctcaacaagcattatcaattggatttgagaaaaaagatttaggccctgtttaattcccaaaacaaaaaaattcacgttgtcacatcgaatgtttagacacatgcatggagtattaaatgtagacaaaaaaaaattacacggattgcgtataaattgcgagacgaatcttttaagcccaattgtgccatgatttgacaatgtggtgctacagtaaacatttgctaatgatggattaattaggcttaataaattcgtctcgcagtttcctggcaaaatctgtaatttgttttgttattagactacgtttcatacttcaaatgtgcgtccgtatatccgatgtgacaaccaaacccaaaaattttccccaactaaacaaggccttaatacaatcggtgaatcatcatagttaagctaacctcaattcagttagtacatcaaaatacgattaaacaacatgaatgatgccaaacatttcgataaagtgctactgaaggtattggaataacctgcatgagtgcaccattcatcgtcatgctcgagcggcgagccctcttcgcgaacaccgccttcctcgctgccaacgccaacgagtagtacccattcgccgagccggcagccatggtgcctgcctcaccgccattctcggcaagctccctgacccaatccaacatcccaaccatgtcctccctcttcctcttcaagattggatgctgcagatctcccccattgcattccaagagtggttcttcattctcccttccattggaatcgaagaatggctctggcttcttcctcccgtcgttgccatccaggaagggtccatgcgcctccacgagcctctggatccagcggtccagggcggcgaggtacttgtggtagattagcttgacgggcgcggcgagggtggcgtcgaggcaaacggactcggcggcggaggcccagacggcgggggacgacgacgtcgcggcgtagccgccggcggcgcggatggcggagaagaggcggagcaggtcgacgcggctcccgtcgccgagcttcgccgggagagggcgcacctcgcggccgcccgggtagacctcgcggaggaacgcggcgaggacggtgtcgaacaggtccgagggggggccggaggccgcggcgtcgccgatccggagatgggcgcagaagccgagagcctgcagcttactgaggatggagaggacgacgccggcggagtccatgggcaggggaggcctcgccggcggcgaggtcacggcggtgggccacggtggcgcattctttttcccttttttgtgcgagtttcgttgtttattttgggtttggatctttccggtgtgttcggtaggtgcggagtgaatgttagt
More
|
||||||||||
| CDS seq | atggactccgccggcgtcgtcctctccatcctcagtaagctgcaggctctcggcttctgcgcccatctccggatcggcgacgccgcggcctccggccccccctcggacctgttcgacaccgtcctcgccgcgttcctccgcgaggtctacccgggcggccgcgaggtgcgccctctcccggcgaagctcggcgacgggagccgcgtcgacctgctccgcctcttctccgccatccgcgccgccggcggctacgccgcgacgtcgtcgtcccccgccgtctgggcctccgccgccgagtccgtttgcctcgacgccaccctcgccgcgcccgtcaagctaatctaccacaagtacctcgccgccctggaccgctggatccagaggctcgtggaggcgcatggacccttcctggatggcaacgacgggaggaagaagccagagccattcttcgattccaatggaagggagaatgaagaaccactcttggaatgcaatgggggagatctgcagcatccaatcttgaagaggaagagggaggacatggttgggatgttggattgggtcagggagcttgccgagaatggcggtgaggcaggcaccatggctgccggctcggcgaatgggtactactcgttggcgttggcagcgaggaaggcggtgttcgcgaagagggctcgccgctcgagcatgacgatgaatggtgcactcatgcaggaaatatttccaatggattgcaagtgctgcatgagttccagcactactggaattgacacacaagaaaaatgcagtaaaaagattcaacttgtcattccacaggctggttcagatattaatgaattgataaatgttgtagaaaacataaatgtgccttcaattggaatggagcaagagaacaacattattggacaagcgaaatatgagagtaggaaacatcataactctgacaactggctttttacgagtcagcagaggaacaaaataccagtgggctctgagttccaagcacaagtaccacaatggactggtgagttgcctgtaagctatgataatgcagaaaccaggaaatggttgggcacaaaggtctggcctctggaaaatggtaacaggaaattatcatatttttgtaaccctgttggaaaaggtagagaaggtgtttgtggctgcaaccttccaggatctgtagaatgtgttaggtttcatgttgcagaaaggagacttcaactgcgacgtgaacttgattcagctttctatgcatggggatttgatcgtatgggagaggaaatcgcactttcctggacagataaagaggaagcaaatttcaaggcttgcgtgcagcttaatgccccatcttcaggaaggaatttctggaagcgtctccatatgctttttcagtcaaagggtaggaaagaacttgtgagctactattttaattgttttctacttagacggaggtgttatcagaataggatgactccaaataacatagatagtgatgatgaggatgagacagaatttggattcttgggtaaccgccttggtcataatgcaactaagtatgacagttccaagtataccctttgcatcgaaagtacacactgcatggatctcaaccaatag
More
|
||||||||||
| Protein seq | MDSAGVVLSILSKLQALGFCAHLRIGDAAASGPPSDLFDTVLAAFLREVYPGGREVRPLPAKLGDGSRVDLLRLFSAIRAAGGYAATSSSPAVWASAAESVCLDATLAAPVKLIYHKYLAALDRWIQRLVEAHGPFLDGNDGRKKPEPFFDSNGRENEEPLLECNGGDLQHPILKRKREDMVGMLDWVRELAENGGEAGTMAAGSANGYYSLALAARKAVFAKRARRSSMTMNGALMQEIFPMDCKCCMSSSTTGIDTQEKCSKKIQLVIPQAGSDINELINVVENINVPSIGMEQENNIIGQAKYESRKHHNSDNWLFTSQQRNKIPVGSEFQAQVPQWTGELPVSYDNAETRKWLGTKVWPLENGNRKLSYFCNPVGKGREGVCGCNLPGSVECVRFHVAERRLQLRRELDSAFYAWGFDRMGEEIALSWTDKEEANFKACVQLNAPSSGRNFWKRLHMLFQSKGRKELVSYYFNCFLLRRRCYQNRMTPNNIDSDDEDETEFGFLGNRLGHNATKYDSSKYTLCIESTHCMDLNQ |
||||||||||
| Function | AT-rich interactive domain-containing protein 2 [UniProtKB/Swiss-Prot:Q9LDD4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0002740 | OsKeNa_04g0002740.01 | Chr04 | 4125391 | 4130341 | - | NAM | ||
| CDS seq | atggactccgccggcgtcgtcctctccatcctcagtaagctgcaggctctcggcttctgcgcccatctccggatcggcgacgccgcggcctccggccccccctcggacctgttcgacaccgtcctcgccgcgttcctccgcgaggtctacccgggcggccgcgaggtgcgccctctcccggcgaagctcggcgacgggagccgcgtcgacctgctccgcctcttctccgccatccgcgccgccggcggctacgccgcgacgtcgtcgtcccccgccgtctgggcctccgccgccgagtccgtttgcctcgacgccaccctcgccgcgcccgtcaagctaatctaccacaagtacctcgccgccctggaccgctggatccagaggctcgtggaggcgcatggacccttcctggatggcaacgacgggaggaagaagccagagccattcttcgattccaatggaagggagaatgaagaaccactcttggaatgcaatgggggagatctgcagcatccaatcttgaagaggaagagggaggacatggttgggatgttggattgggtcagggagcttgccgagaatggcggtgaggcaggcaccatggctgccggctcggcgaatgggtactactcgttggcgttggcagcgaggaaggcggtgttcgcgaagagggctcgccgctcgagcatgacgatgaatggtgcactcatgcaggaaatatttccaatggattgcaagtgctgcatgagttccagcactactggaattgacacacaagaaaaatgcagtaaaaagattcaacttgtcattccacaggctggttcagatattaatgaattgataaatgttgtagaaaacataaatgtgccttcaattggaatggagcaagagaacaacattattggacaagcgaaatatgagagtaggaaacatcataactctgacaactggctttttacgagtcagcagaggaacaaaataccagtgggctctgagttccaagcacaagtaccacaatggactggtgagttgcctgtaagctatgataatgcagaaaccaggaaatggttgggcacaaaggtctggcctctggaaaatggtaacaggaaattatcatatttttgtaaccctgttggaaaaggtagagaaggtgtttgtggctgcaaccttccaggatctgtagaatgtgttaggtttcatgttgcagaaaggagacttcaactgcgacgtgaacttgattcagctttctatgcatggggatttgatcgtatgggagaggaaatcgcactttcctggacagataaagaggaagcaaatttcaaggcttgcgtgcagcttaatgccccatcttcaggaaggaatttctggaagcgtctccatatgctttttcagtcaaagggtaggaaagaacttgtgagctactattttaattgttttctacttagacggaggtgttatcagaataggatgactccaaataacatagatagtgatgatgaggatgagacagaatttggattcttgggtaaccgccttggtcataatgcaactaagtatgacagttccaagtataccctttgcatcgaaagtacacactgcatggatctcaaccaatag
More
|
|||||||
| Protein seq | MDSAGVVLSILSKLQALGFCAHLRIGDAAASGPPSDLFDTVLAAFLREVYPGGREVRPLPAKLGDGSRVDLLRLFSAIRAAGGYAATSSSPAVWASAAESVCLDATLAAPVKLIYHKYLAALDRWIQRLVEAHGPFLDGNDGRKKPEPFFDSNGRENEEPLLECNGGDLQHPILKRKREDMVGMLDWVRELAENGGEAGTMAAGSANGYYSLALAARKAVFAKRARRSSMTMNGALMQEIFPMDCKCCMSSSTTGIDTQEKCSKKIQLVIPQAGSDINELINVVENINVPSIGMEQENNIIGQAKYESRKHHNSDNWLFTSQQRNKIPVGSEFQAQVPQWTGELPVSYDNAETRKWLGTKVWPLENGNRKLSYFCNPVGKGREGVCGCNLPGSVECVRFHVAERRLQLRRELDSAFYAWGFDRMGEEIALSWTDKEEANFKACVQLNAPSSGRNFWKRLHMLFQSKGRKELVSYYFNCFLLRRRCYQNRMTPNNIDSDDEDETEFGFLGNRLGHNATKYDSSKYTLCIESTHCMDLNQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.163650 | 1.174116 | 1.286554 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0166400 | RBH | 0.585714 | 0.380279 | 2.175153 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g08410 | RBH | 0.698191 | 0.202889 | 0.431826 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0166400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0002420 | RBH | 0.398909 | 2.107736 | 2.196170 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0002500 | RBH | 0.491477 | 3.613389 | 4.449599 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0002640 | RBH | 0.056914 | 0.198983 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0002560 | RBH | 0.842446 | 2.778896 | 4.944232 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0071400 | RBH | 3.5926215 | 7.477555 | 7.5671235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002710 | RBH | 0.244924 | 0.268785 | 0.867691 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0069000 | RBH | 3.670178 | 5.4708615 | 12.466755 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002510 | RBH | 0.100469 | 0.098348 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0002730 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0002570 | RBH | 1.529634 | 2.698860 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002420 | RBH | 0.148944 | 0.678196 | 0.743245 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0002510 | RBH | 0.133089 | 2.964715 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G002750 | RBH | 0.0 | 0.000000 | 1.371786 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002550 | RBH | 0.302706 | 0.0 | 4.807423 |
