Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_04g0000870 | OGI:04003950 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr04:1043789-1046611 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcagaggctgtggtgtttggaatcctatgcaagattggatccatcttgagttcacatctaacacaggcgttcgttgcacacttgggaaaggaggtatcagttttcattgaaattgaaagcagtattaagcaaatcagaagtgagtttaggttgatgcaagctttcctgcaagacggccaagaaaaagaaagtcatagcaggctggcagaaacctttctacacgaagttcagcaggtatcatttgaagttgaagacattctggatgaatttgtctatttgtttggccaaaaacaaaccgcatctctaaaatcattgaggaacttctttccaaaatctaaaagtatgatgcactggcagagactagcagcagagctcaaagaagcgcagaaccgcctccagaatttgcgaaatttgaaggttcagtacaatattgacttatccgaagaaagtcctagttctatcaggtatgaagatagccaagttcacacaatccaacacataaagcataataacaaaattgttggttttgcaaacgagcgagactgcctacaagagctgctgatgacaaacgagaaatcatgctcaataatttccatatggggcatgggaggttcaggtaaaactactcttgtcaaaactgtttttgaaagaaaagctatcaagaatcgttttgattgcctgatctgggtaactgtgtcacaaacatatgacattactgaaataatgagaaagattatacaatgtgcattgaaggaaacttgcccagctgacctagaaagcatgtgtagtgaaggtgtagccctgaagctccaggggactttgcagggaaggacatacatgatgatcttggatgatgtgtgggatacaaatgtttggttcaacttggaaccttttctagatttgaacagcagaggaagcaaggttgtaattactactcgcataaacgatgttgcttctttggcagatgacaagaaccgccttcaactacgaggactaaacggggcagagtcttgggacctcttttgcatgtgggcattcagacatactgaagatcaaacatgtcctctcagattggagagagtagcaagacagattgttggcaggtgtgaaggtctgccattagctataacagctgtaggcaatttgctatccttcaaaagactggattcatttgagtgggataaattctataatcaactaaactgggaattgcacagtcgattggataaccaaggacttaacttggtgacccgactcctaggtttaagctacaggcatctaccaggccacttgaagaactgtttccttttgtccagtatcttcccagaggactatatcatacatgggaagcggctaagtagactgttaatagcagaaggtttagttgaaccaaggaaaaatatgacactggaggagattgcaacagagtacattgaaaagctagtagatcgctgcctgatccaagttgtcaggagggataagcttggaagaatatggcaactccagatgcatgacattgtgagggaactggcaatttcaatatctgaaaaggaaggattctgcatgatttatactagtaaagaagcatatacatcagtgattgggtgcgagcctcgccgtttatcagttcatgagaattatgacagagtccagcaaagtataaatgctcaacgcgttcgttctttctacccatatcaattggatagtgattattccatgatttcaaatgtgcaatgggtgtcaacaactgctagatacttgaaggttctagaattaagcaatattccaatcacaacactaccgagagacattgggagcttgttcaatttacattatttaggattgagacgaaccaaggtcaagcaacttcctgaatcaattgacaggctccaaaatctccgaactttggacatctaccatactgaaataggaaaactgcccagcggcataaccaggctaaggttgctacgccatttgattgcaggcaaggctgaagcttcttattttggcattgccgatgtctacacaggtgtgcaaatgccgaatggaacatggcgatcactggacataaatttattcacaggcatttctgcaagcagcaagttggtggaacaattggctaagttaacacagctgagatcgctgaggctgacagacgttaaaagtactcactatgccaagctatttgcatccatcagcaagatgcgttttctacggagactgtttattgaggctgcccatagggatgagtgtgtgagcttggaagccctaaaccctgcacctcatcaccttgaactactctgtatgaaaggcaagctccatgagagcgtcatagggtgccacctatttgaggtaaataggctaagcctccgagagctgactcttcagaatagcaggctcagcattgatccacttccatcactctccaatttttgtaacctgacccttcttggtctgttcaacacttacagtggagaaagcttgctctttcaggcagggtggtttcctaagctccaaacactcactttggctgagctgcaaaatgtcaattcaatagtgatacaggagtatagcatgccaaatctctacaacctagctctcatctgcttgaaaaatctggagtatttgccccaaggcatggaattcctaaaatctgttgaagagttcaatctagtgggcatgcaccacaagttcatggaagatgtacaagctggttcgtcatatgagaaagtcaaacacataccggtagttgactactttgaccaaagcaaagggaggtgggatcgactttcacgagtttatggcaaaggtaacccatga
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| CDS seq | atggcagaggctgtggtgtttggaatcctatgcaagattggatccatcttgagttcacatctaacacaggcgttcgttgcacacttgggaaaggaggtatcagttttcattgaaattgaaagcagtattaagcaaatcagaagtgagtttaggttgatgcaagctttcctgcaagacggccaagaaaaagaaagtcatagcaggctggcagaaacctttctacacgaagttcagcaggtatcatttgaagttgaagacattctggatgaatttgtctatttgtttggccaaaaacaaaccgcatctctaaaatcattgaggaacttctttccaaaatctaaaagtatgatgcactggcagagactagcagcagagctcaaagaagcgcagaaccgcctccagaatttgcgaaatttgaaggttcagtacaatattgacttatccgaagaaagtcctagttctatcaggtatgaagatagccaagttcacacaatccaacacataaagcataataacaaaattgttggttttgcaaacgagcgagactgcctacaagagctgctgatgacaaacgagaaatcatgctcaataatttccatatggggcatgggaggttcaggtaaaactactcttgtcaaaactgtttttgaaagaaaagctatcaagaatcgttttgattgcctgatctgggtaactgtgtcacaaacatatgacattactgaaataatgagaaagattatacaatgtgcattgaaggaaacttgcccagctgacctagaaagcatgtgtagtgaaggtgtagccctgaagctccaggggactttgcagggaaggacatacatgatgatcttggatgatgtgtgggatacaaatgtttggttcaacttggaaccttttctagatttgaacagcagaggaagcaaggttgtaattactactcgcataaacgatgttgcttctttggcagatgacaagaaccgccttcaactacgaggactaaacggggcagagtcttgggacctcttttgcatgtgggcattcagacatactgaagatcaaacatgtcctctcagattggagagagtagcaagacagattgttggcaggtgtgaaggtctgccattagctataacagctgtaggcaatttgctatccttcaaaagactggattcatttgagtgggataaattctataatcaactaaactgggaattgcacagtcgattggataaccaaggacttaacttggtgacccgactcctaggtttaagctacaggcatctaccaggccacttgaagaactgtttccttttgtccagtatcttcccagaggactatatcatacatgggaagcggctaagtagactgttaatagcagaaggtttagttgaaccaaggaaaaatatgacactggaggagattgcaacagagtacattgaaaagctagtagatcgctgcctgatccaagttgtcaggagggataagcttggaagaatatggcaactccagatgcatgacattgtgagggaactggcaatttcaatatctgaaaaggaaggattctgcatgatttatactagtaaagaagcatatacatcagtgattgggtgcgagcctcgccgtttatcagttcatgagaattatgacagagtccagcaaagtataaatgctcaacgcgttcgttctttctacccatatcaattggatagtgattattccatgatttcaaatgtgcaatgggtgtcaacaactgctagatacttgaaggttctagaattaagcaatattccaatcacaacactaccgagagacattgggagcttgttcaatttacattatttaggattgagacgaaccaaggtcaagcaacttcctgaatcaattgacaggctccaaaatctccgaactttggacatctaccatactgaaataggaaaactgcccagcggcataaccaggctaaggttgctacgccatttgattgcaggcaaggctgaagcttcttattttggcattgccgatgtctacacaggtgtgcaaatgccgaatggaacatggcgatcactggacataaatttattcacaggcatttctgcaagcagcaagttggtggaacaattggctaagttaacacagctgagatcgctgaggctgacagacgttaaaagtactcactatgccaagctatttgcatccatcagcaagatgcgttttctacggagactgtttattgaggctgcccatagggatgagtgtgtgagcttggaagccctaaaccctgcacctcatcaccttgaactactctgtatgaaaggcaagctccatgagagcgtcatagggtgccacctatttgaggtaaataggctaagcctccgagagctgactcttcagaatagcaggctcagcattgatccacttccatcactctccaatttttgtaacctgacccttcttggtctgttcaacacttacagtggagaaagcttgctctttcaggcagggtggtttcctaagctccaaacactcactttggctgagctgcaaaatgtcaattcaatagtgatacaggagtatagcatgccaaatctctacaacctagctctcatctgcttgaaaaatctggagtatttgccccaaggcatggaattcctaaaatctgttgaagagttcaatctagtgggcatgcaccacaagttcatggaagatgtacaagctggttcgtcatatgagaaagtcaaacacataccggtagttgactactttgaccaaagcaaagggaggtgggatcgactttcacgagtttatggcaaaggtaacccatga
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| Protein seq | MAEAVVFGILCKIGSILSSHLTQAFVAHLGKEVSVFIEIESSIKQIRSEFRLMQAFLQDGQEKESHSRLAETFLHEVQQVSFEVEDILDEFVYLFGQKQTASLKSLRNFFPKSKSMMHWQRLAAELKEAQNRLQNLRNLKVQYNIDLSEESPSSIRYEDSQVHTIQHIKHNNKIVGFANERDCLQELLMTNEKSCSIISIWGMGGSGKTTLVKTVFERKAIKNRFDCLIWVTVSQTYDITEIMRKIIQCALKETCPADLESMCSEGVALKLQGTLQGRTYMMILDDVWDTNVWFNLEPFLDLNSRGSKVVITTRINDVASLADDKNRLQLRGLNGAESWDLFCMWAFRHTEDQTCPLRLERVARQIVGRCEGLPLAITAVGNLLSFKRLDSFEWDKFYNQLNWELHSRLDNQGLNLVTRLLGLSYRHLPGHLKNCFLLSSIFPEDYIIHGKRLSRLLIAEGLVEPRKNMTLEEIATEYIEKLVDRCLIQVVRRDKLGRIWQLQMHDIVRELAISISEKEGFCMIYTSKEAYTSVIGCEPRRLSVHENYDRVQQSINAQRVRSFYPYQLDSDYSMISNVQWVSTTARYLKVLELSNIPITTLPRDIGSLFNLHYLGLRRTKVKQLPESIDRLQNLRTLDIYHTEIGKLPSGITRLRLLRHLIAGKAEASYFGIADVYTGVQMPNGTWRSLDINLFTGISASSKLVEQLAKLTQLRSLRLTDVKSTHYAKLFASISKMRFLRRLFIEAAHRDECVSLEALNPAPHHLELLCMKGKLHESVIGCHLFEVNRLSLRELTLQNSRLSIDPLPSLSNFCNLTLLGLFNTYSGESLLFQAGWFPKLQTLTLAELQNVNSIVIQEYSMPNLYNLALICLKNLEYLPQGMEFLKSVEEFNLVGMHHKFMEDVQAGSSYEKVKHIPVVDYFDQSKGRWDRLSRVYGKGNP |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_04g0000870 | OsKeNa_04g0000870.01 | Chr04 | 1043789 | 1046611 | + | NAM | ||
| CDS seq | atggcagaggctgtggtgtttggaatcctatgcaagattggatccatcttgagttcacatctaacacaggcgttcgttgcacacttgggaaaggaggtatcagttttcattgaaattgaaagcagtattaagcaaatcagaagtgagtttaggttgatgcaagctttcctgcaagacggccaagaaaaagaaagtcatagcaggctggcagaaacctttctacacgaagttcagcaggtatcatttgaagttgaagacattctggatgaatttgtctatttgtttggccaaaaacaaaccgcatctctaaaatcattgaggaacttctttccaaaatctaaaagtatgatgcactggcagagactagcagcagagctcaaagaagcgcagaaccgcctccagaatttgcgaaatttgaaggttcagtacaatattgacttatccgaagaaagtcctagttctatcaggtatgaagatagccaagttcacacaatccaacacataaagcataataacaaaattgttggttttgcaaacgagcgagactgcctacaagagctgctgatgacaaacgagaaatcatgctcaataatttccatatggggcatgggaggttcaggtaaaactactcttgtcaaaactgtttttgaaagaaaagctatcaagaatcgttttgattgcctgatctgggtaactgtgtcacaaacatatgacattactgaaataatgagaaagattatacaatgtgcattgaaggaaacttgcccagctgacctagaaagcatgtgtagtgaaggtgtagccctgaagctccaggggactttgcagggaaggacatacatgatgatcttggatgatgtgtgggatacaaatgtttggttcaacttggaaccttttctagatttgaacagcagaggaagcaaggttgtaattactactcgcataaacgatgttgcttctttggcagatgacaagaaccgccttcaactacgaggactaaacggggcagagtcttgggacctcttttgcatgtgggcattcagacatactgaagatcaaacatgtcctctcagattggagagagtagcaagacagattgttggcaggtgtgaaggtctgccattagctataacagctgtaggcaatttgctatccttcaaaagactggattcatttgagtgggataaattctataatcaactaaactgggaattgcacagtcgattggataaccaaggacttaacttggtgacccgactcctaggtttaagctacaggcatctaccaggccacttgaagaactgtttccttttgtccagtatcttcccagaggactatatcatacatgggaagcggctaagtagactgttaatagcagaaggtttagttgaaccaaggaaaaatatgacactggaggagattgcaacagagtacattgaaaagctagtagatcgctgcctgatccaagttgtcaggagggataagcttggaagaatatggcaactccagatgcatgacattgtgagggaactggcaatttcaatatctgaaaaggaaggattctgcatgatttatactagtaaagaagcatatacatcagtgattgggtgcgagcctcgccgtttatcagttcatgagaattatgacagagtccagcaaagtataaatgctcaacgcgttcgttctttctacccatatcaattggatagtgattattccatgatttcaaatgtgcaatgggtgtcaacaactgctagatacttgaaggttctagaattaagcaatattccaatcacaacactaccgagagacattgggagcttgttcaatttacattatttaggattgagacgaaccaaggtcaagcaacttcctgaatcaattgacaggctccaaaatctccgaactttggacatctaccatactgaaataggaaaactgcccagcggcataaccaggctaaggttgctacgccatttgattgcaggcaaggctgaagcttcttattttggcattgccgatgtctacacaggtgtgcaaatgccgaatggaacatggcgatcactggacataaatttattcacaggcatttctgcaagcagcaagttggtggaacaattggctaagttaacacagctgagatcgctgaggctgacagacgttaaaagtactcactatgccaagctatttgcatccatcagcaagatgcgttttctacggagactgtttattgaggctgcccatagggatgagtgtgtgagcttggaagccctaaaccctgcacctcatcaccttgaactactctgtatgaaaggcaagctccatgagagcgtcatagggtgccacctatttgaggtaaataggctaagcctccgagagctgactcttcagaatagcaggctcagcattgatccacttccatcactctccaatttttgtaacctgacccttcttggtctgttcaacacttacagtggagaaagcttgctctttcaggcagggtggtttcctaagctccaaacactcactttggctgagctgcaaaatgtcaattcaatagtgatacaggagtatagcatgccaaatctctacaacctagctctcatctgcttgaaaaatctggagtatttgccccaaggcatggaattcctaaaatctgttgaagagttcaatctagtgggcatgcaccacaagttcatggaagatgtacaagctggttcgtcatatgagaaagtcaaacacataccggtagttgactactttgaccaaagcaaagggaggtgggatcgactttcacgagtttatggcaaaggtaacccatga
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| Protein seq | MAEAVVFGILCKIGSILSSHLTQAFVAHLGKEVSVFIEIESSIKQIRSEFRLMQAFLQDGQEKESHSRLAETFLHEVQQVSFEVEDILDEFVYLFGQKQTASLKSLRNFFPKSKSMMHWQRLAAELKEAQNRLQNLRNLKVQYNIDLSEESPSSIRYEDSQVHTIQHIKHNNKIVGFANERDCLQELLMTNEKSCSIISIWGMGGSGKTTLVKTVFERKAIKNRFDCLIWVTVSQTYDITEIMRKIIQCALKETCPADLESMCSEGVALKLQGTLQGRTYMMILDDVWDTNVWFNLEPFLDLNSRGSKVVITTRINDVASLADDKNRLQLRGLNGAESWDLFCMWAFRHTEDQTCPLRLERVARQIVGRCEGLPLAITAVGNLLSFKRLDSFEWDKFYNQLNWELHSRLDNQGLNLVTRLLGLSYRHLPGHLKNCFLLSSIFPEDYIIHGKRLSRLLIAEGLVEPRKNMTLEEIATEYIEKLVDRCLIQVVRRDKLGRIWQLQMHDIVRELAISISEKEGFCMIYTSKEAYTSVIGCEPRRLSVHENYDRVQQSINAQRVRSFYPYQLDSDYSMISNVQWVSTTARYLKVLELSNIPITTLPRDIGSLFNLHYLGLRRTKVKQLPESIDRLQNLRTLDIYHTEIGKLPSGITRLRLLRHLIAGKAEASYFGIADVYTGVQMPNGTWRSLDINLFTGISASSKLVEQLAKLTQLRSLRLTDVKSTHYAKLFASISKMRFLRRLFIEAAHRDECVSLEALNPAPHHLELLCMKGKLHESVIGCHLFEVNRLSLRELTLQNSRLSIDPLPSLSNFCNLTLLGLFNTYSGESLLFQAGWFPKLQTLTLAELQNVNSIVIQEYSMPNLYNLALICLKNLEYLPQGMEFLKSVEEFNLVGMHHKFMEDVQAGSSYEKVKHIPVVDYFDQSKGRWDRLSRVYGKGNP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.045507 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0118800 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g02860 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0118800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000920 | RBH | 0.067295 | 1.859112 | 0.448572 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000940 | RBH | 0.148690 | 0.0 | 0.234536 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0000970 | RBH | 0.012296 | 0.020895 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000940 | RBH | 0.927060 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0022700 | RBH | 0.0266425 | 0.1527395 | 0.0071505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0001050 | RBH | 0.0 | 0.056818 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0022200 | RBH | 1.0091755 | 0.519552 | 0.52201 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000910 | RBH | 0.0 | 0.081087 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0001010 | RBH | 0.064612 | 3.915626 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0001020 | RBH | 0.0 | 2.236707 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000880 | RBH | 0.0 | 0.0 | 0.081117 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0001050 | RBH | 0.125053 | 1.408552 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G000980 | RBH | 0.083307 | 0.425650 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001050 | RBH | 0.0 | 0.0 | 0.0 |
