Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0041430 | OGI:03099090 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:36613655-36617866 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cctcgcattcaacggacaacggcccatcaagtccattgcctcaaccctagtccccaactccgcccccaccgccgcaggcgcgccgccgcctcgccgacccgtcgccgtcgtcgtcgccgcctcgccacgcctcatcatacccctgtaacatcgcgtccgccacctcgctcgcggccatggtggacgcggcggcggcggcggcggagtgcggcgagctggacgggacggacgccatggcctacggcgacgaccggacgccgcgggacgggatggtgttcaagtcgtacgaggaggtgctcaacttctacaagcgctacgccctccgcaccgggttcggggtctgcgtcaagaagtcgtccttcaccaaggccggcctctgccgccgcctggtgctcgtctgcaacaagtggggggacgggaaggaggacgcgtgctaccaggcgaggccgacggccaagaccaactgccaggccaccgtcgtcgcgaggctctggagcgatggcctgctgcacctcatggatgtcaatctggagcacaaccacgcgctgaatccctccgcggcgcggttcctgaggtgctacaagacgttgcctagtgggatgagtaaagatctggtggtgagggctgccagaggggaatgctcgacctccggcgacatcgaggtcccgatattcgatgattgggggaggctcaagattggggaagatgatgtagcggccatcaatggctttttcgcggatatgcaggcgaagcaggcgaacttcttctatctcatggatttctacggggaaggccatctgaggagtgttttttgggccgattcgaggtccagggcagcgtaccaatatttcaacgacgctgtttggattgatacaacctgcttaagaaataggtttgatacaccccttgttttgttcctaggggtgaaccatcatggtgagcttgttctgttaggctgtggcttgttttcggatgagagtacggaaagcttcttatggctgctgaagtcgtggttgacttgtatgaaaggatggcctccgaatgccatagttacggatgattgtgccgcgataaaagccgcagttcgtgaagtatttccaaatgcacgccatcgaataagtgattggcatgtgttaagaagtatctctgaaaagttaggagaatcagcacaatttgaaggaatgaagaccgaattggaaactgtaatatatgattccttgaaggatgacgagtttgaggcaaggtggaataacttgatcagtagatttggccttcaggataatgaatggatcacttttctgtatgaaaatcgccatttctgggtccccgcctttctgaaagataccttctgggctgggttatctactgttaaccaccatgagagtccaaatgccttctttgaagattcaatcaacccagagaccaaattggtgacattccttagcagctatgtgaatcttttacagaacaaatacaaaatggaggaagatgatgatcttgagtcattgagtagaagcagggtgctagtatcgaagtttcctatggaagaacagctatctagactatacacctttaaaatgttcactaaactccagaatgagctgaacgcaaccatgaattgtgaagttcagttggatgattcaacatcctccattgtagttattgatctagctgagtcaagcggagaaatggtgaataaaaaatatgaagtcgttcactgtatggagaccgacaggatggaatgcaactgtggcctgttccagttcagtggcattgtttgtcggcatacattatcggtgcttaaatgtcagcatgtttttgatatacccccctgttatgtgcttaacaggtggcggaatgactttaagcagcttcacgccttagataatccatggaaggatttggtaacaagtaatcatattgagcgctatgattatgtttctttgcagtgcctccgtcttgttgagattggagcatcatcagatgagaagcatcagcatgcattaaaattaataagagacatacgacggacccttcttgatgataatttgtgccgggaattggagcagaaacttacaccatctgaacgtgctattaatggtgacagccacatgcaagctggctcatctgagggagggccagcaaaaaagcgccgtggccgtcctcccaaaaagagtaaagatacaaatgtggagtccgtgtcaaatcaatatgcccataaggtatctccttacgtcgactatgtgtactttacgctagtttgttatttgtactaatcgagttcattcttgtattgaaggattctttactggtatcatcggacgttagtcagaaggatgcttttcattcttcttctactgcctcaaatcttggtactcatgtcaggacaaatggtgttgttgaccttatggtagtaattatgatcgatgctgggttttgttccgtacattgtttggtatgatagtcttgactatgtagttactttttattgtgtaccttccaggaagaagttaatccaaatgagctatcttttgatagccgttatggggtgcagtctagccacccacaccattatggcaatcagctgcatccaagcaacactatgcaggttttttttttcttttcaacaacaagcttgcatttccatttatgatttttctcccacatgtgcaactgacaaaaagaagtaaataatttcttaaaattggatagtttggccaaactacatcaacagcagagcactctagagtccagtggatgtaccagaatatatttcaggtggatgcttactttgcatttctagtacttttgtagagtttgccagaatcaacattttactgtagtaatgtgatttgtatatgcacttatgtgttataataaatgtaggacgatcaagtgccttatggcagacggacatgacagcaatcaaatactgggttcagatggtgccatttcaggtttctttctcattttagttactgtaccattttagggttctgacttctgagctctaactccgaagcagtcccaccatcagctcatcagtcatcacgattgaatgttgcaatttttgatgagcagagcatggaaacaaacagatacactcaaaattgtacgatatgtaggcaagtcttctacactgtaaattcaggaaccctgtattttgtagttagatacccccaaactcaatggtaatgatacttcacagttcacattcacactcttgggcacacaaacattgatggataaaattgagatgttgtaggggcagaaatatttcataaacccaggaaattctgaatttaattagtccctgtgactacggcatcatgttctctactaatatatgattcaccataacttggcactgaccataacatatatcaagtgttaatagatctgcgtcatgtgcagtcatctgttgaatggctgtacatcTttttttttttatatgttgtgtccattcctaccttttctatttatcagcataataattacttacggagttcacttatatgcatgtataggaaaattacttaaggcacctgcaaccgcaccgtctgaatcaatgtgaattttggagttcctgtatttgatagtgtgtaacatatattgaaattatagccttttgttttgcaattcaacacattaactgttgcctcgctagagaagatacagagaaacaccttccaactagtttggctatctggaaatttcagcatttcaaatactaagctcattgcatatactggataaggaagctatgttgtttctaatcaggagatagcattccttctgggacatttccaaattctgagactaatttctaatgattatctttcacgccgcaggttttcatcagacatacagaaggaaagaactctttctcaagaaaacaaactcaagggaggcattcccctctggatgtagagcagatctaacatcagaataatcggaacacagtaatgtggcacaaactggtcattttgtctcgtctatagaaaactaggaatgtagtcatgttacatctcagatcttgaagcagctaaaattcggtcgctttctcgtaagcagtgacctagcttgaaatttagtctaatcaagagtactcctccattgacatgtgaattctttcgtttgttcttgtgtaaatacccgagcggtgaacattgaaggtaaagaaaagaccaagcctggggatcattctgcata
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| CDS seq | atggtggacgcggcggcggcggcggcggagtgcggcgagctggacgggacggacgccatggcctacggcgacgaccggacgccgcgggacgggatggtgttcaagtcgtacgaggaggtgctcaacttctacaagcgctacgccctccgcaccgggttcggggtctgcgtcaagaagtcgtccttcaccaaggccggcctctgccgccgcctggtgctcgtctgcaacaagtggggggacgggaaggaggacgcgtgctaccaggcgaggccgacggccaagaccaactgccaggccaccgtcgtcgcgaggctctggagcgatggcctgctgcacctcatggatgtcaatctggagcacaaccacgcgctgaatccctccgcggcgcggttcctgaggtgctacaagacgttgcctagtgggatgagtaaagatctggtggtgagggctgccagaggggaatgctcgacctccggcgacatcgagtttcctatggaagaacagctatctagactatacacctttaaaatgttcactaaactccagaatgagctgaacgcaaccatgaattgtgaagttcagttggatgattcaacatcctccattgtagttattgatctagctgagtcaagcggagaaatggtgaataaaaaatatgaagtcgttcactgtatggagaccgacaggatggaatgcaactgtggcctgttccagttcagtggcattgtttgtcggcatacattatcggtgcttaaatgtcagcatgtttttgatatacccccctgttatgtgcttaacaggtggcggaatgactttaagcagcttcacgccttagataatccatggaaggatttggtaacaagtaatcatattgagcgctatgattatgtttctttgcagtgcctccgtcttgttgagattggagcatcatcagatgagaagcatcagcatgcattaaaattaataagagacatacgacggacccttcttgatgataatttgtgccgggaattggagcagaaacttacaccatctgaacgtgctattaatggtgacagccacatgcaagctggctcatctgagggagggccagcaaaaaagcgccgtggccgtcctcccaaaaagagtaaagatacaaatgtggagtccgtgtcaaatcaatatgcccataaggattctttactggtatcatcggacgttagtcagaaggatgcttttcattcttcttctactgcctcaaatcttggtactcatgtcaggacaaatggtgttgttgaccttatggaagaagttaatccaaatgagctatcttttgatagccgttatggggtgcagtctagccacccacaccattatggcaatcagctgcatccaagcaacactatgcagtttggccaaactacatcaacagcagagcactctagagtccagtggatgtaccagaatatatttcaggacgatcaagtgccttatggcagacggacatga
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| Protein seq | MVDAAAAAAECGELDGTDAMAYGDDRTPRDGMVFKSYEEVLNFYKRYALRTGFGVCVKKSSFTKAGLCRRLVLVCNKWGDGKEDACYQARPTAKTNCQATVVARLWSDGLLHLMDVNLEHNHALNPSAARFLRCYKTLPSGMSKDLVVRAARGECSTSGDIEFPMEEQLSRLYTFKMFTKLQNELNATMNCEVQLDDSTSSIVVIDLAESSGEMVNKKYEVVHCMETDRMECNCGLFQFSGIVCRHTLSVLKCQHVFDIPPCYVLNRWRNDFKQLHALDNPWKDLVTSNHIERYDYVSLQCLRLVEIGASSDEKHQHALKLIRDIRRTLLDDNLCRELEQKLTPSERAINGDSHMQAGSSEGGPAKKRRGRPPKKSKDTNVESVSNQYAHKDSLLVSSDVSQKDAFHSSSTASNLGTHVRTNGVVDLMEEVNPNELSFDSRYGVQSSHPHHYGNQLHPSNTMQFGQTTSTAEHSRVQWMYQNIFQDDQVPYGRRT |
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| Function | Protein FAR1-RELATED SEQUENCE 3 [UniProtKB/Swiss-Prot:Q9ZVC9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0041430 | OsKeNa_03g0041430.01 | Chr03 | 36613831 | 36617866 | + | NAM | ||
| CDS seq | atggtggacgcggcggcggcggcggcggagtgcggcgagctggacgggacggacgccatggcctacggcgacgaccggacgccgcgggacgggatggtgttcaagtcgtacgaggaggtgctcaacttctacaagcgctacgccctccgcaccgggttcggggtctgcgtcaagaagtcgtccttcaccaaggccggcctctgccgccgcctggtgctcgtctgcaacaagtggggggacgggaaggaggacgcgtgctaccaggcgaggccgacggccaagaccaactgccaggccaccgtcgtcgcgaggctctggagcgatggcctgctgcacctcatggatgtcaatctggagcacaaccacgcgctgaatccctccgcggcgcggttcctgaggtgctacaagacgttgcctagtgggatgagtaaagatctggtggtgagggctgccagaggggaatgctcgacctccggcgacatcgagtttcctatggaagaacagctatctagactatacacctttaaaatgttcactaaactccagaatgagctgaacgcaaccatgaattgtgaagttcagttggatgattcaacatcctccattgtagttattgatctagctgagtcaagcggagaaatggtgaataaaaaatatgaagtcgttcactgtatggagaccgacaggatggaatgcaactgtggcctgttccagttcagtggcattgtttgtcggcatacattatcggtgcttaaatgtcagcatgtttttgatatacccccctgttatgtgcttaacaggtggcggaatgactttaagcagcttcacgccttagataatccatggaaggatttggtaacaagtaatcatattgagcgctatgattatgtttctttgcagtgcctccgtcttgttgagattggagcatcatcagatgagaagcatcagcatgcattaaaattaataagagacatacgacggacccttcttgatgataatttgtgccgggaattggagcagaaacttacaccatctgaacgtgctattaatggtgacagccacatgcaagctggctcatctgagggagggccagcaaaaaagcgccgtggccgtcctcccaaaaagagtaaagatacaaatgtggagtccgtgtcaaatcaatatgcccataaggattctttactggtatcatcggacgttagtcagaaggatgcttttcattcttcttctactgcctcaaatcttggtactcatgtcaggacaaatggtgttgttgaccttatggaagaagttaatccaaatgagctatcttttgatagccgttatggggtgcagtctagccacccacaccattatggcaatcagctgcatccaagcaacactatgcagtttggccaaactacatcaacagcagagcactctagagtccagtggatgtaccagaatatatttcaggacgatcaagtgccttatggcagacggacatga
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| Protein seq | MVDAAAAAAECGELDGTDAMAYGDDRTPRDGMVFKSYEEVLNFYKRYALRTGFGVCVKKSSFTKAGLCRRLVLVCNKWGDGKEDACYQARPTAKTNCQATVVARLWSDGLLHLMDVNLEHNHALNPSAARFLRCYKTLPSGMSKDLVVRAARGECSTSGDIEFPMEEQLSRLYTFKMFTKLQNELNATMNCEVQLDDSTSSIVVIDLAESSGEMVNKKYEVVHCMETDRMECNCGLFQFSGIVCRHTLSVLKCQHVFDIPPCYVLNRWRNDFKQLHALDNPWKDLVTSNHIERYDYVSLQCLRLVEIGASSDEKHQHALKLIRDIRRTLLDDNLCRELEQKLTPSERAINGDSHMQAGSSEGGPAKKRRGRPPKKSKDTNVESVSNQYAHKDSLLVSSDVSQKDAFHSSSTASNLGTHVRTNGVVDLMEEVNPNELSFDSRYGVQSSHPHHYGNQLHPSNTMQFGQTTSTAEHSRVQWMYQNIFQDDQVPYGRRT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0041430 | OsKeNa_03g0041430.02 | Chr03 | 36613655 | 36617863 | + | IsoSeq | ||
| CDS seq | atgataatttgtgccgggaattggagcagaaacttacaccatctgaacgtgctattaatggtgacagccacatgcaagctggctcatctgagggagggccagcaaaaaagcgccgtggccgtcctcccaaaaagagtaaagatacaaatgtggagtccgtgtcaaatcaatatgcccataaggattctttactggtatcatcggacgttagtcagaaggatgcttttcattcttcttctactgcctcaaatcttggtactcatgtcaggacaaatggtgttgttgaccttatggaagaagttaatccaaatgagctatcttttgatagccgttatggggtgcagtctagccacccacaccattatggcaatcagctgcatccaagcaacactatgcagtttggccaaactacatcaacagcagagcactctagagtccagtggatgtaccagaatatatttcaggacgatcaagtgccttatggcagacggacatgacagcaatcaaatactgggttcagatggtgccatttcaggttttcatcagacatacagaaggaaagaactctttctcaagaaaacaaactcaagggaggcattcccctctggatgtagagcagatctaacatca
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| Protein seq | MIICAGNWSRNLHHLNVLLMVTATCKLAHLREGQQKSAVAVLPKRVKIQMWSPCQINMPIRILYWYHRTLVRRMLFILLLLPQILVLMSGQMVLLTLWKKLIQMSYLLIAVMGCSLATHTIMAISCIQATLCSLAKLHQQQSTLESSGCTRIYFRTIKCLMADGHDSNQILGSDGAISGFHQTYRRKELFLKKTNSREAFPSGCRADLTS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.175200 | 2.151382 | 2.838092 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0843700 | RBH | 1.906159 | 1.933432 | 2.233811 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g62660 | RBH | 1.208708 | 1.249943 | 0.532385 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0843700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0041730 | RBH | 0.439508 | 8.928016 | 3.875489 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0041480 | RBH | 0.286703 | 4.940849 | 4.045395 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0041720 | RBH | 0.332513 | 0.352737 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0041260 | RBH | 6.719732 | 6.972945 | 9.484837 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0606300 | RBH | 0.7087695 | 1.7875575 | 2.088155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0040990 | RBH | 0.483122 | 0.652523 | 0.831008 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0608100 | RBH | 7.670753 | 13.407089 | 26.596213 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0041550 | RBH | 0.098437 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0041480 | RBH | 0.589861 | 12.924162 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0041170 | RBH | 8.885387 | 3.959869 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0041240 | RBH | 0.565440 | 0.762910 | 0.637539 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0041270 | RBH | 0.166573 | 1.760761 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G041040 | RBH | 0.558275 | 2.048293 | 1.398166 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0040710 | RBH | 1.286959 | 20.309376 | 6.239305 |
