Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0040910 | OGI:03098240 | 11/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:36294737-36298008 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggtagcgcagaggtatggggaggagctgggcgtcagtgatgagctccgacgacggcgaggcgctctccctcctcggctcctcccttcaatatggttgcaatcaaggatgtatgtgaggatggccaggtggtgcacattgtgatggttcactatatcggtcgaaggtttttgatcgggggtcaccgaaatttcggaaatttcggtccgaaattttaaacaaaatttagttgaatttgaacaaatattacccaacttcatgaaaaaaattgcaaaattcaaaaatttctgccgaattaatatcgtatcggaggggactgaaatgaccgaaatttcaccctggttgttggtgagctcttggacaagattcaggatgaggggcattacaatgagtgaaaggctgcagagattaaagacgatgatctgtcaataaagacgatagattttggtctacccatgttcttcaaaccaaacaagtgttcttatatggcacattttaatgcatgtgtagtggtttatttttaatttagagagtaacaggtcaacataatatgtatatgtctgctttgctttatattctgtggatagtatttgcacgccaacataatcaagaccatcctaactatattctgttgtttatccatcttccttgacagttcttgcactgtatgtgtcagctcatgtgtgaagtcttgtggatttataaattagtttatgaattttccattttacaatttgcaggtcaggttttcactgagttggttgggagtgcatagtatgttgctcatgaggtactgcacaaatgttatggaccataatctgaggtactacaaaaatattatggaccataatctgaggtactacacaaatgttatggaccagaatatttaatatattctggaattgctaaagtgatcgcatcctatccttttccagagacacgacaaggaatatttgatgcagttctgaagggtctcatcgattttcaatcagttctaaagatatctaacagtgaaaagtatcttatagggaaaatgctatctcaatgtccttcagagcgtttgaactttgaagggccatgaagtgttaagtaagtatatttgacctatttcttcacctaaattagttgcccttttgtttcgttgcctatccatatagctgaggagctctgcattgttcataacatattttggtacataatttttatgttcactaattattttagagccacaaaccttttgatttgctgagtgatatatatatgttaacatcaggacacccttggatgtgagaaagtggagttgctattgatcaagcaaaaccaacagatacaccgatcagttttggcgagatcactagacagcggcagggcgcttcatcactatctacccaacattagcctcctacgctactaatttgaactgcactgtctcttcacaacatacaaatggcaattggactataagcctgcaccctgtgctctctatgcagtcacaagcagaactgcaatccctcatgaacacattggcaggacaacagttacagcagaatatcctggataaaagatctacagtgactggctccatggacatcacaacatcaacaaactacaacctactgacataccatggtatattatggcagccagcatcaatcatctggaacaaggcaacccccaacacttgccgcatcttcctttggttggccttcagggacagacttaacaccaatgcaaacagagttcacaaaaaatgggctattgatccacactgcagctcttgcccaactattgaaacagccaaccacatcattcttcactgcaagctagccgacgaagtttggaaaaagctaaaccttcatatgcaagcaatgagcagtgccaacattcaggccttcgtcgagctaatcttggataatatgccggaacaacagaagctaggttggccagcgtgcttcgcagcttgtgcacatggcctgtggaaggcgcgcaatcaacgggtgttcaaacacactgagcctcactctgctactatcatacaacaaatcaaggaaaatctacgcctgtgggtccatcgccttaagccaagccttcgcatccacatcaacacttgggcagacaagcttagttgacatagcaccctcctgtcttgagttgcttcttccttttttcgtttgtttctgttccattttttccattcttcttcttctttctttcttctttaattcttcttcctttcttcttgcttctctgttatttgtatttctcgcctataactcccttgccagtttctggctcggtccttctttgaccaccattaatacaatggttataaggtagagtctctctaccttttgcgtcaaaaaaaagctctagatcccagtgttatcacttggctcaaacatttctctgcaatgaacaagtaaaaaagttggctttaagagcgagtgcttcatctacccttatgcttccatattgctgctatgatatttgctatcatatcatcttaatcaatatcgccgattggccttcactataatccctttgcatgccatgctatattgtcattcttctttggatccttccgatagtaaaataagttaattttggtacatgtcaactttgagatctttacaaggctgataatatgattttattacaatgtcaatcatcactaagctgccacctatattccaaatctttagttccattaccaactaccatattgcaagatcaaagaataaagattcaatagccagactggcatggatcatcacttggctttaacattaatctgcaaaagagaaatgatcacatggctgccaaagtccattctgcgttgaaagttctacaaaatgataagaaacgtgcgactgttgtttttctttgggtgattcttagttgtacaaagacattcatgattcacttcatattctccgaaacactgtcaggctgaagtcagtgaagataaatccaaagcctataatgttgctgatcttggagaggtgagattaagtgaagaatttttctttctgaatggctatcaggttgctcttgagtttctctacaaagaggatcgttgtaatgttactaatgttaaggaagttgtgcttagtgttattgagaacacaccggttctccacttgattgatccaaaacgaatcaagttcctggcagaaaaccttgctggcaaagaaagtgagaccaacccagccacggctcacttgaccttggttttgcttagtctgagacatgctgatttgctatcatgttaa
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| CDS seq | atggtagcgcagaggtatggggaggagctgggctatttgcacgccaacataatcaagaccatcctaactatattctgttgtttatccatcttccttgacagttcttgcactccagcatcaatcatctggaacaaggcaacccccaacacttgccgcatcttcctttggttggccttcagggacagacttaacaccaatgcaaacagagttcacaaaaaatgggctattgatccacactgcagctcttgcccaactattgaaacagccaaccacatcattcttcactgcaagctagccgacgaagtttggaaaaagctaaaccttcatatgcaagcaatgagcagtgccaacattcaggccttcgtcgagctaatcttggataatatgccggaacaacagaagctaggttggccagcgtgcttcgcagcttgtgcacatggcctgtggaaggcgcgcaatcaacgggtgttcaaacacactgagcctcactctgctactatcatacaacaaatcaaggaaaatctacgcctgtgggtccatcgccttaagccaagccttcgcatccacatcaacacttgggcagacaagcttatcagtgaagataaatccaaagcctataatgttgctgatcttggagaggttgctcttgagtttctctacaaagaggatcgttgtaatgttactaatgttaaggaagttgtgcttagtgttattgagaacacaccggttctccacttgattgatccaaaacgaatcaagttcctggcagaaaaccttgctggcaaagaaagtgagaccaacccagccacggctcacttgaccttggttttgcttagtctgagacatgctgatttgctatcatgttaa
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| Protein seq | MVAQRYGEELGYLHANIIKTILTIFCCLSIFLDSSCTPASIIWNKATPNTCRIFLWLAFRDRLNTNANRVHKKWAIDPHCSSCPTIETANHIILHCKLADEVWKKLNLHMQAMSSANIQAFVELILDNMPEQQKLGWPACFAACAHGLWKARNQRVFKHTEPHSATIIQQIKENLRLWVHRLKPSLRIHINTWADKLISEDKSKAYNVADLGEVALEFLYKEDRCNVTNVKEVVLSVIENTPVLHLIDPKRIKFLAENLAGKESETNPATAHLTLVLLSLRHADLLSC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0040910 | OsKeNa_03g0040910.01 | Chr03 | 36294737 | 36298008 | + | NAM | ||
| CDS seq | atggtagcgcagaggtatggggaggagctgggctatttgcacgccaacataatcaagaccatcctaactatattctgttgtttatccatcttccttgacagttcttgcactccagcatcaatcatctggaacaaggcaacccccaacacttgccgcatcttcctttggttggccttcagggacagacttaacaccaatgcaaacagagttcacaaaaaatgggctattgatccacactgcagctcttgcccaactattgaaacagccaaccacatcattcttcactgcaagctagccgacgaagtttggaaaaagctaaaccttcatatgcaagcaatgagcagtgccaacattcaggccttcgtcgagctaatcttggataatatgccggaacaacagaagctaggttggccagcgtgcttcgcagcttgtgcacatggcctgtggaaggcgcgcaatcaacgggtgttcaaacacactgagcctcactctgctactatcatacaacaaatcaaggaaaatctacgcctgtgggtccatcgccttaagccaagccttcgcatccacatcaacacttgggcagacaagcttatcagtgaagataaatccaaagcctataatgttgctgatcttggagaggttgctcttgagtttctctacaaagaggatcgttgtaatgttactaatgttaaggaagttgtgcttagtgttattgagaacacaccggttctccacttgattgatccaaaacgaatcaagttcctggcagaaaaccttgctggcaaagaaagtgagaccaacccagccacggctcacttgaccttggttttgcttagtctgagacatgctgatttgctatcatgttaa
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| Protein seq | MVAQRYGEELGYLHANIIKTILTIFCCLSIFLDSSCTPASIIWNKATPNTCRIFLWLAFRDRLNTNANRVHKKWAIDPHCSSCPTIETANHIILHCKLADEVWKKLNLHMQAMSSANIQAFVELILDNMPEQQKLGWPACFAACAHGLWKARNQRVFKHTEPHSATIIQQIKENLRLWVHRLKPSLRIHINTWADKLISEDKSKAYNVADLGEVALEFLYKEDRCNVTNVKEVVLSVIENTPVLHLIDPKRIKFLAENLAGKESETNPATAHLTLVLLSLRHADLLSC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.595841 | 0.0 | 0.268249 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0836600 | RBH | 0.859822 | 1.199251 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g62040 | RBH | 0.581000 | 0.805964 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0836600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0041240 | SBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0040980 | RBH | 1.192481 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0041210 | RBH | 0.089536 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0040720 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0600000 | RBH | 1.1811515 | 0.804873 | 0.133141 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0040480 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0431300 | RBH | 0 | 0 | 0.014794 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0041050 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0040960 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0040650 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0040710 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0040760 | SBH | 0.133473 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G040540 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0040250 | RBH | 0.0 | 0.0 | 0.0 |
