Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0036240 | OGI:03089940 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:33287792-33290206 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaccagtaatctttacacgagcagaggccatccctgaaatgatgaaacctcgtggcgtcccgcacgatgatctccctgtccgtgaccttggagatggccttgatcgcggcgtggcagtcgttgcacacccgcaggttcttcatgacccgcagcgtcgtcttctccggcgtgctgatgaggccgaacgcgatggcgagcttctcgctgtggcggctcagcagctcctccttgagctcgtcgtcgacgtcgtgcaggacggactgcaggtcgggcacgaacccggcccccttgatctcctcccacatcctcgccgccatcgcgtacacggcgtccctctgcgggtgcaccacgtcgtcggcgccgaagacgtggatcttgctgcggatgtgcgtccagctgaaccccgtctccttcctcaccgccttctccttcctcgccttccatatcctcgccgcgtcgctccacctcccgcaggcggaatacacgttggcaatggcggagtaggcgccgctgttgttgggatcgatcgacagaagcttctccgctgcgagctcagccaattctgcgttcttgtgcactctgcaggctgagaggagtgatccccaggctattgcgtccggctcaacgggcattcgtcggatgaactcctgagcttcagagaacaggccggcgcgggcgaggaggtcaaccatgcaggcgtaatggctcatctctggtgcaatctggtgctcattctttatctgatcatagtacctcttcccttcattgacaaaaccggcatgcgagcacgctgataacacgccgacataggtaatgcgatccggttccacgccagcgcggagcatttcttcgaagaggccaacagcttcctctccttggccatgctgtgctagagccacgatcatggatgtccatgtgatcgtctccttgcgccagcaaacctgatcaaacatcctcctggcccatgggaagctgcctgacctggcgtacatggtgatgatggcgttgctgactgaactagattgctctagcaatgatctgatagccctgcagtggatctgcttgccgtaatcaaggcatgccaggcttgcacagacactaagaacagcagccagagtatagctgtttggttctgggccacatgtgatcattgatctgaagagatctatagcctcatcgttgcggccattctgctcatatccgacaatcatcgcagtccaggcaacaacatctcggttattcataacaccgaacatttcccttgcactctccatatccccaatcttgacatagccttccaggagggcagtgaaggatatcacattcagatcggtttccattgactgatccatgattctcctggcattctcaacactgccagacttggcgtatgttgaaatgagagcatttgtgacctggctattgtatgccatttcagttctcaagatatatgcatgcacctgctttccaatccttacatttccgaggtttgcacaagctgataggacactggtgatggtgaattcatccggcgccatggaagactcatgaagcattcttgagaacaacttcagtgccttggcatcaagcccattctggttgtaccctgcaatcatggcattccatgagacgatgctccggtctggcatgctctcgaacaaggattcggcaaggtccatcctccccagatgagtgttcagagataccatggcgttccagcttgacacgctccgcaccggcatcctttcaaacacagtagtcgccgtctcagaatccccacactttccatacatgttgagcaccgagttcgccaccggcacgcaactaccgagcccgagcttgacgacgaaggaatgaaccttcctcccaactgcgccggcctgtgtcacggcgcacgacgacagcacatttgtgagagtgaactgcgtcggcgtaaacccatcagcggtcatgtccaagagggtcttgatagcctccccgaaccggccggcgcggttgagcccgacgaccatgactgtccaggagacggcatccctctcaggcatttccgcgaacacgccgcgggcgtcggccaagcgcccggacttggcgaacatcgacaggagcgagttccaggtgaacacgttccgccgcgccaaggggatctcgtcgaacaggcgtcgcgcgtcccgcaacccaccggcgccgccggcggtctcgccgtagtaggagagcaggttgttgcagaggtaggcgctggcgaggaggccagccttgacggcgcgcgcgtggatggcacggccagcgcccgggttagccgccgtctggcagagctgcaggagccgcgcgtagtgatcgctggcggccaccatcgccggccgcgccgccgccgcggcgtcggcggcgtggagctccaaggcggcggcatctcgcat
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| CDS seq | atgcgagatgccgccgccttggagctccacgccgccgacgccgcggcggcggcgcggccggcgatggtggccgccagcgatcactacgcgcggctcctgcagctctgccagacggcggctaacccgggcgctggccgtgccatccacgcgcgcgccgtcaaggctggcctcctcgccagcgcctacctctgcaacaacctgctctcctactacggcgagaccgccggcggcgccggtgggttgcgggacgcgcgacgcctgttcgacgagatccccttggcgcggcggaacgtgttcacctggaactcgctcctgtcgatgttcgccaagtccgggcgcttggccgacgcccgcggcgtgttcgcggaaatgcctgagagggatgccgtctcctggacagtcatggtcgtcgggctcaaccgcgccggccggttcggggaggctatcaagaccctcttggacatgaccgctgatgggtttacgccgacgcagttcactctcacaaatgtgctgtcgtcgtgcgccgtgacacaggccggcgcagttgggaggaaggttcattccttcgtcgtcaagctcgggctcggtagttgcgtgccggtggcgaactcggtgctcaacatgtatggaaagtgtggggattctgagacggcgactactgtgtttgaaaggatgccggtgcggagcgtgtcaagctggaacgccatggtatctctgaacactcatctggggaggatggaccttgccgaatccttgttcgagagcatgccagaccggagcatcgtctcatggaatgccatgattgcagggtacaaccagaatgggcttgatgccaaggcactgaagttgttctcaagaatgcttcatgagtcttccatggcgccggatgaattcaccatcaccagtgtcctatcagcttgtgcaaacctcggaaatgtaaggattggaaagcaggtgcatgcatatatcttgagaactgaaatggcatacaatagccaggtcacaaatgctctcatttcaacatacgccaagtctggcagtgttgagaatgccaggagaatcatggatcagtcaatggaaaccgatctgaatgtgatatccttcactgccctcctggaaggctatgtcaagattggggatatggagagtgcaagggaaatgttcggtgttatgaataaccgagatgttgttgcctggactgcgatgattgtcggatatgagcagaatggccgcaacgatgaggctatagatctcttcagatcaatgatcacatgtggcccagaaccaaacagctatactctggctgctgttcttagtgtctgtgcaagcctggcatgccttgattacggcaagcagatccactgcagggctatcagatcattgctagagcaatctagttcagtcagcaacgccatcatcaccatgtacgccaggtcaggcagcttcccatgggccaggaggatgtttgatcaggtttgctggcgcaaggagacgatcacatggacatccatgatcgtggctctagcacagcatggccaaggagaggaagctgttggcctcttcgaagaaatgctccgcgctggcgtggaaccggatcgcattacctatgtcggcgtgttatcagcgtgctcgcatgccggttttgtcaatgaagggaagaggtactatgatcagataaagaatgagcaccagattgcaccagagatgagccattacgcctgcatggttgacctcctcgcccgcgccggcctgttctctgaagctcaggagttcatccgacgaatgcccgttgagccggacgcaatagcctggggatcactcctctcagcctgcagagtgcacaagaacgcagaattggctgagctcgcagcggagaagcttctgtcgatcgatcccaacaacagcggcgcctactccgccattgccaacgtgtattccgcctgcgggaggtggagcgacgcggcgaggatatggaaggcgaggaaggagaaggcggtgaggaaggagacggggttcagctggacgcacatccgcagcaagatccacgtcttcggcgccgacgacgtggtgcacccgcagagggacgccgtgtacgcgatggcggcgaggatgtgggaggagatcaagggggccgggttcgtgcccgacctgcagtccgtcctgcacgacgtcgacgacgagctcaaggaggagctgctgagccgccacagcgagaagctcgccatcgcgttcggcctcatcagcacgccggagaagacgacgctgcgggtcatgaagaacctgcgggtgtgcaacgactgccacgccgcgatcaaggccatctccaaggtcacggacagggagatcatcgtgcgggacgccacgaggtttcatcatttcagggatggcctctgctcgtgtaaagattactggtag
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| Protein seq | MRDAAALELHAADAAAAARPAMVAASDHYARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW |
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| Function | Pentatricopeptide repeat-containing protein At2g22070 [UniProtKB/Swiss-Prot:Q9SHZ8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0036240 | OsKeNa_03g0036240.01 | Chr03 | 33287792 | 33290206 | - | NAM | ||
| CDS seq | atgcgagatgccgccgccttggagctccacgccgccgacgccgcggcggcggcgcggccggcgatggtggccgccagcgatcactacgcgcggctcctgcagctctgccagacggcggctaacccgggcgctggccgtgccatccacgcgcgcgccgtcaaggctggcctcctcgccagcgcctacctctgcaacaacctgctctcctactacggcgagaccgccggcggcgccggtgggttgcgggacgcgcgacgcctgttcgacgagatccccttggcgcggcggaacgtgttcacctggaactcgctcctgtcgatgttcgccaagtccgggcgcttggccgacgcccgcggcgtgttcgcggaaatgcctgagagggatgccgtctcctggacagtcatggtcgtcgggctcaaccgcgccggccggttcggggaggctatcaagaccctcttggacatgaccgctgatgggtttacgccgacgcagttcactctcacaaatgtgctgtcgtcgtgcgccgtgacacaggccggcgcagttgggaggaaggttcattccttcgtcgtcaagctcgggctcggtagttgcgtgccggtggcgaactcggtgctcaacatgtatggaaagtgtggggattctgagacggcgactactgtgtttgaaaggatgccggtgcggagcgtgtcaagctggaacgccatggtatctctgaacactcatctggggaggatggaccttgccgaatccttgttcgagagcatgccagaccggagcatcgtctcatggaatgccatgattgcagggtacaaccagaatgggcttgatgccaaggcactgaagttgttctcaagaatgcttcatgagtcttccatggcgccggatgaattcaccatcaccagtgtcctatcagcttgtgcaaacctcggaaatgtaaggattggaaagcaggtgcatgcatatatcttgagaactgaaatggcatacaatagccaggtcacaaatgctctcatttcaacatacgccaagtctggcagtgttgagaatgccaggagaatcatggatcagtcaatggaaaccgatctgaatgtgatatccttcactgccctcctggaaggctatgtcaagattggggatatggagagtgcaagggaaatgttcggtgttatgaataaccgagatgttgttgcctggactgcgatgattgtcggatatgagcagaatggccgcaacgatgaggctatagatctcttcagatcaatgatcacatgtggcccagaaccaaacagctatactctggctgctgttcttagtgtctgtgcaagcctggcatgccttgattacggcaagcagatccactgcagggctatcagatcattgctagagcaatctagttcagtcagcaacgccatcatcaccatgtacgccaggtcaggcagcttcccatgggccaggaggatgtttgatcaggtttgctggcgcaaggagacgatcacatggacatccatgatcgtggctctagcacagcatggccaaggagaggaagctgttggcctcttcgaagaaatgctccgcgctggcgtggaaccggatcgcattacctatgtcggcgtgttatcagcgtgctcgcatgccggttttgtcaatgaagggaagaggtactatgatcagataaagaatgagcaccagattgcaccagagatgagccattacgcctgcatggttgacctcctcgcccgcgccggcctgttctctgaagctcaggagttcatccgacgaatgcccgttgagccggacgcaatagcctggggatcactcctctcagcctgcagagtgcacaagaacgcagaattggctgagctcgcagcggagaagcttctgtcgatcgatcccaacaacagcggcgcctactccgccattgccaacgtgtattccgcctgcgggaggtggagcgacgcggcgaggatatggaaggcgaggaaggagaaggcggtgaggaaggagacggggttcagctggacgcacatccgcagcaagatccacgtcttcggcgccgacgacgtggtgcacccgcagagggacgccgtgtacgcgatggcggcgaggatgtgggaggagatcaagggggccgggttcgtgcccgacctgcagtccgtcctgcacgacgtcgacgacgagctcaaggaggagctgctgagccgccacagcgagaagctcgccatcgcgttcggcctcatcagcacgccggagaagacgacgctgcgggtcatgaagaacctgcgggtgtgcaacgactgccacgccgcgatcaaggccatctccaaggtcacggacagggagatcatcgtgcgggacgccacgaggtttcatcatttcagggatggcctctgctcgtgtaaagattactggtag
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| Protein seq | MRDAAALELHAADAAAAARPAMVAASDHYARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.053195 | 0.886181 | 0.521434 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0775400 | RBH | 0.554627 | 0.708632 | 0.698234 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g56400 | RBH | 0.372450 | 0.473288 | 0.178484 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0775400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0036570 | RBH | 0.147739 | 1.025454 | 0.742682 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0036640 | RBH | 0.136827 | 0.000000 | 0.342727 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0036320 | RBH | 0.411436 | 1.739563 | 0.646832 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0036610 | RBH | 0.029530 | 0.024425 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0036120 | RBH | 0.000000 | 0.000000 | 0.935668 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0547900 | RBH | 1.294774 | 2.3209415 | 0.772233 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0035920 | RBH | 0.120193 | 0.199251 | 0.204132 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0548700 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0036410 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0036420 | RBH | 0.0 | 1.125827 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0036070 | RBH | 0.726751 | 2.597288 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0036160 | RBH | 0.0 | 0.092980 | 0.089961 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0036120 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G035910 | RBH | 0.275298 | 0.0 | 0.138665 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0035690 | RBH | 0.742250 | 0.0 | 0.918150 |
