Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0034930 | OGI:03087620 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:32338279-32339077 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctactccttggaggaatggaaacttaccctgatggtgtcatagtagttccagccaacctccttggagagctggccgaggaggcagtacttgtgcccaggctgcagcctcagaaccctacaattcggcaccaaacaaacaccattagaccaatcgctcgtgcacaattacaataatcacaaaaagaaaatatccaaacaacaagcgaatccgacgtacttgagcgcgtcggggatgaccatgcgcttggtcctgtcgtacggcggcgtcacgacctcgtacgccttcagccttgccagcgccgcctctcccctcttggtcttgtgcgggatcatgctgcaggggattcaccgcgccgccgacgcaaaatcagaacaggaatcgaaatgacaaggggaaagcggagagaaatccattgatccgcacagcttcggggtttgattagcttacccgcggacggtgcgccagaggatcttggcgggggagcggaagtggatggggccatgggagggcttggtgttcatcctcttcggaggaagcggaggtacttcatcttctggcggacgaggccgccggacatgcagatctcctagcagcggacgaccaccacgcgcttcccgttgaggagctccttggcgatgatggaagccaggcggctgagcatgtggtggcgcgcgtccaccacgacgcgcggcgcgcacacgccggagcaggacaccatcttcgacttacctctcctctcctggaggcggcggcggcggcggcactagggtttggaggggtggcaggggtggaggcgga
More
|
||||||||||
| CDS seq | atgaacaccaagccctcccatggccccatccacttccgctcccccgccaagatcctctggcgcaccgtccgcggcatgatcccgcacaagaccaagaggggagaggcggcgctggcaaggctgaaggcgtacgaggtcgtgacgccgccgtacgacaggaccaagcgcatggtcatccccgacgcgctcaaggttctgaggctgcagcctgggcacaagtactgcctcctcggccagctctccaaggaggttggctggaactactatgacaccatcagggtaagtttccattcctccaaggagtag |
||||||||||
| Protein seq | MNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIRVSFHSSKE |
||||||||||
| Function | 60S ribosomal protein L13a-2 [UniProtKB/Swiss-Prot:Q9LRX8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0034930 | OsKeNa_03g0034930.01 | Chr03 | 32338279 | 32339077 | - | NAM | ||
| CDS seq | atgaacaccaagccctcccatggccccatccacttccgctcccccgccaagatcctctggcgcaccgtccgcggcatgatcccgcacaagaccaagaggggagaggcggcgctggcaaggctgaaggcgtacgaggtcgtgacgccgccgtacgacaggaccaagcgcatggtcatccccgacgcgctcaaggttctgaggctgcagcctgggcacaagtactgcctcctcggccagctctccaaggaggttggctggaactactatgacaccatcagggtaagtttccattcctccaaggagtag
More
|
|||||||
| Protein seq | MNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIRVSFHSSKE |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 6.969665 | 0.819049 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0755700 | RBH | 3.695145 | 3.809724 | 4.188938 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g54860 | RBH | 2.112573 | 2.284290 | 0.917112 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0755700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0035260 | RBH | 0.961821 | 8.869086 | 7.637891 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0034960 | RBH | 0.426596 | 48.806316 | 17.503435 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0035020 | RBH | 1.848503 | 47.329285 | 10.095379 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0035320 | RBH | 0.0 | 0.281667 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0034840 | RBH | 0.000000 | 0.000000 | 16.745420 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0533900 | RBH | 110.3468285 | 139.8154755 | 130.2304075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0034620 | RBH | 0.000000 | 0.793058 | 0.713538 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0532800 | RBH | 7.497479 | 17.100666 | 28.6753015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0035100 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0035130 | RBH | 0.899009 | 21.934809 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0034790 | RBH | 7.417588 | 14.526637 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0034870 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0034820 | RBH | 2.381385 | 110.590401 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G034640 | SBH | 3.311990 | 118.699951 | 29.019211 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0034480 | SBH | 9.037729 | 173.153503 | 59.742760 |
