Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0033890 | OGI:03085320 | 9/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:31509541-31510419 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctatgcgacaacgcgttcgccggcgagatacctgacgcgctccgcaattgcaccgccctcgacgtcgcgtacctcaacaacaacaacctcgatcgtcggcggcgttccacggtggctcgacgcgttgccgaatctcacggtgctccggctcagccacaactcgctctccggccacatcccgccatcgctggcgaacctcacgaagatcgtgcagctcgagttcgaccagaaccttatggaaagttccatccccgacggcttgtcaagcctcccagcgctccgcatgttagccttgtcgcataacagcctcactggagagatcccgccgagtttcttcaacatgacgtcgttgcgaggcctcacactcgtgaacaacgtgttccgtggcgagctcccagccgatcgacgtgggcgcgcgcggaccagcacattcctcccaagttctaaacgcagttcaaaccatacaagtgtaaaacttcatcaccgaattcgcatttctatctactccacgattcgaacatcaactagcaatagcactgtagtctgtaccacgagttcacgaccgacacctccaggctctatccctaacccaagtaacaaccaaaagaacccaccaaacctagacatctcgagcgattcccacacgggtctgcgagggctagcgaatctatcgacactacataaatcagagtaagtccaaagaagcaccttgcggcggaggtgctccttggggatgtcggagaccatgcttatctcgcctggcttgatctcaacgagggcgtcggatgctgccgtggagagcatccgcgcgggcgcgggagacaatgagaggagcgcccaccccagggaggggaggctccgcaggagcggggcatccat
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| CDS seq | atggatgccccgctcctgcggagcctcccctccctggggtgggcgctcctctcattgtctcccgcgcccgcgcggatgctctccacggcagcatccgacgccctcgttgagatcaagccaggcgagataagcatggtctccgacatccccaaggagcacctccgccgcaaggtgcttctttggacttactctgatttatgtagtgtcgatagattcgctagccctcgcagacccgtgtgggaatcgctcgagatgtctaggtttgaacttgggaggaatgtgctggtccgcgcgcgcccacgtcgatcggctgggagctcgccacggaacacgttgttcacgagtgtgaggcctcgcaacgacgtcatgttgaagaaactcggcgggatctctccagtgaggctgttatgcgacaaggctaacatgcggagcgctgggaggcttgacaagccgtcggggatggaactttccataaggttctggtcgaactcgagctgcacgatcttcgtgaggttcgccagcgatggcgggatgtggccggagagcgagttgtggctgagccggagcaccgtgagattcggcaacgcgtcgagccaccgtggaacgccgccgacgatcgaggttgttgttgttgaggtacgcgacgtcgagggcggtgcaattgcggagcgcgtcaggtatctcgccggcgaacgcgttgtcgcatag
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| Protein seq | MDAPLLRSLPSLGWALLSLSPAPARMLSTAASDALVEIKPGEISMVSDIPKEHLRRKVLLWTYSDLCSVDRFASPRRPVWESLEMSRFELGRNVLVRARPRRSAGSSPRNTLFTSVRPRNDVMLKKLGGISPVRLLCDKANMRSAGRLDKPSGMELSIRFWSNSSCTIFVRFASDGGMWPESELWLSRSTVRFGNASSHRGTPPTIEVVVVEVRDVEGGAIAERVRYLAGERVVA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0033890 | OsKeNa_03g0033890.01 | Chr03 | 31509541 | 31510419 | - | NAM | ||
| CDS seq | atggatgccccgctcctgcggagcctcccctccctggggtgggcgctcctctcattgtctcccgcgcccgcgcggatgctctccacggcagcatccgacgccctcgttgagatcaagccaggcgagataagcatggtctccgacatccccaaggagcacctccgccgcaaggtgcttctttggacttactctgatttatgtagtgtcgatagattcgctagccctcgcagacccgtgtgggaatcgctcgagatgtctaggtttgaacttgggaggaatgtgctggtccgcgcgcgcccacgtcgatcggctgggagctcgccacggaacacgttgttcacgagtgtgaggcctcgcaacgacgtcatgttgaagaaactcggcgggatctctccagtgaggctgttatgcgacaaggctaacatgcggagcgctgggaggcttgacaagccgtcggggatggaactttccataaggttctggtcgaactcgagctgcacgatcttcgtgaggttcgccagcgatggcgggatgtggccggagagcgagttgtggctgagccggagcaccgtgagattcggcaacgcgtcgagccaccgtggaacgccgccgacgatcgaggttgttgttgttgaggtacgcgacgtcgagggcggtgcaattgcggagcgcgtcaggtatctcgccggcgaacgcgttgtcgcatag
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| Protein seq | MDAPLLRSLPSLGWALLSLSPAPARMLSTAASDALVEIKPGEISMVSDIPKEHLRRKVLLWTYSDLCSVDRFASPRRPVWESLEMSRFELGRNVLVRARPRRSAGSSPRNTLFTSVRPRNDVMLKKLGGISPVRLLCDKANMRSAGRLDKPSGMELSIRFWSNSSCTIFVRFASDGGMWPESELWLSRSTVRFGNASSHRGTPPTIEVVVVEVRDVEGGAIAERVRYLAGERVVA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g44630 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0034210 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0024690 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0033990 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0034280 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0024900 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0520700 | RBH | 0.018225 | 0 | 0.021148 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0024410 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0521400 | RBH | 0 | 0 | 0.0089155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0024830 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0024800 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0024470 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0033830 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0004030 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G033620 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0033460 | RBH | 0.0 | 0.0 | 0.000000 |
