Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0021270 | OGI:03045270 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:17725404-17729144 | ||||||||
| Gene Symbol | GL1D, OsMyb3, OSMYB3, MYB3, OsGL1D, SMG3, SG3 | ||||||||||
| DNA seq | ctactggtggtggtggtggtggtggtggtggtggtggtcaccgtcgtcgtcttcctctgcttccagctgccccagcaacgcctccaggtcaacagctccagcctcgccaccgccaccggcgccgccgagctcatagccaatcggcatcggcagattcggcaccgctccggcggcggcgttaccgtcgtcgtggccgccgccgcgccacgggctgatcaggaagccgtcgagtcctcccagctcgatgtcgtccaagtcaaggtcgatacagacggccggcaccggcaggtcgtcgtcatcctccgctccggccagctcttgctgctgctgctgctgcaccgcctgcggcgtggccaccttatcagccgccgcgtctcccggcgcgccgctctccggcggacggccgccgtggctgcaggcgcctgcctgctgcaccaccactatcccgctgctgctgttgttgttgcaccgcagcgccttggtccggattgggctgacgacgaccgtgcggggctccggcgatcgccggcgtcgtgcagcagcgccggcggcgtcggcattgctgctggtggtggccgccgccggcatgctggtggcggcggcggtccgttgcatggcgacccgcttgctgagggtgctgttccagtagttcttgatttcattgtctgttcgccccggcagcctcccggctatcagcgaccatctgcatccatagttccatacaagtcttaccaagttttcaaaattgaagcaatttcgaccaaatttgaaaaagaaaagaacaacacaaaagttttggttcgctacgtattgcagatctacagcagtaaacaagttttaagtatagatggccatatggcccgaggcccatggcccggcccaaggcacgccattttggcccagcccaaacatggcatgacccgactggggtcgtgcccgtactagccagatccaacaaccgggccatgcctgggctgcaccctaggcacggtgggttggcccggcacaacaactatagggatgcaaatagacttaattaccgtataaggcaaggccaaaaagaagaagaatacaaaatagacttattttccagccatatgaacacagtcaacagagttgagggataaaaaatatactttttttttagaagcacaatgggccgtcgtgtctttcggactgctgtgtatgcagcccgtgggctggcacggcacggcccggcgtgtcggtcgggccatgccgacctgattaacctcggcctaggcacggccgtgccgtgccacccatttgaccaactatagttttataagttccctcgcttcgtactccatgtgtcgtaaagtttcaggcctattattatttttaatatacggtcttcaatatttgaccatctatttatttcataatacgtaccaataactataaaattagcataagcttttaaaaatacgaatataattatatgataggcatcacattagatatagaaatggataatataaacatagatatttgaccatatatttatttctcattttatcccctttttgtttttaagagtccaattgtcttcatactaatttatgttagcaggtcgtagttgtaaaatctcctctctttttttctatgatacgtaaggcttttacgtgttcgtaaaataattattagttaaaagttgtctagattgatttttctaaaaacaaggacgtctcgttaaattgagacggagggggtattaagttgcaatgcacaatgtgagctgcacttttccatatgtgaaagcacaatgcttgccacgtctgagagaagtggttgtgcattcatcatgtgctcttccgatcctaggcaaaaactttgctcttctttcttgtgtgagtttgtggctttaggtgtatatatagaagcagccttgtatgattccatctgtcatcatcaactttgctgacctaattactcttttcagattaccctaatctggagagcagagactgcactgacaacaaaaggtttgttcttctagagagacagctgatctggaaaattgtgcaggtggtgactgatttgggtaaaagtgtgcttaggtggttctgttaattggaggcaattagttgttggcttagtcatggctgtgttggcctactttgtctgtttctcatctcatggagcagacagatgtgtgatatctgtcatcaaaccaagagaaacgaatagaaagcttcattccatcatgtgctaaagagagcaagctagttactagggagatgatcatgatgagtccataaccctaatatactgatgtgcaatcttttaaaggaccctctctacatacgtctagcaataaaattctcggtgatattctcagaattcttgatctcattttggggaaaaaaatgattccttgtcagagtattttaaagaaaaacatttgaattttgaaaggaaaacccaattttgaacaattcagatctaaagaaattgaggggctgtttggttcgcgtcttgatgcttgcatgcctggccggagcgctgcctaagctccaacaactacgtgtttggtttgtgccctggtgtatcctgagctagcctgacctgactcttcattagcctgctaaatcctcaggcaactttattagcctgagccaggccatcgaatttggatgcctgagcttcaggcagctactcttaatgatgcatgtgtcatttattctatgctttgctctagtaaaagttgctttttgatattttattattcttcaggtatgtgcatgaaccaaacacacaaagcttcaggctgcctatgaggcaagtgttgcatctcccaatgctgcctgtccggcgtgagtttttctcaggcgtggccctcaggacacgaaccaaacaacccctgagtaactgcagcatttttgtgggagcagaaaaaaaatctcggcgagattcatcagaactatggtcatccgccagtagtgatcatgtccttgtacgctctagctaaaattcattcatttggctcgcaagaaaagaaaataaaatcattcatttggcttgaacactagtgtcaggctgtctgcaatctgcatgttactgttcccctagagtttagcatcggagtttggctgatttagaacggacttagaaacagggcgccaaaaaaaagagagagagagagagagaggagagaaacaggattttactgaacaagaatgcatcatggctgcatcgtcaatttcttcagcaacgcaggaatgcagatatgcaggcatgcagagcaaagcagtcctatcaagtatgcaaatcaatcactaactactccagtacatacactgaattggcgagttaaattactgataagcaagcaggaaatgaaagtggtaggccgggctggattaatttgcaggagaggaggagaggagaggatcagagacaggcctgttgccgaggagagtgtggagcctgaggatgagctcctcctcgtcgccggagatgttgcccctcttgatccccggccgcaggtagttgagccaccgcagccggcagctcttcccgcaccgcttcagccctgcattgcattcatccatggcgatctcatctcatcacttcatcagctgttcaccaccgatcgaaggcaaagctagagagtagagaggaggaggaagaagacgacgaccgaccggctctcttggggagggctccccatttgccctccccgtgcttggcgatgtaggacaccaggatgtcgtcctccat
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| CDS seq | atggaggacgacatcctggtgtcctacatcgccaagcacggggagggcaaatggggagccctccccaagagagccgggctgaagcggtgcgggaagagctgccggctgcggtggctcaactacctgcggccggggatcaagaggggcaacatctccggcgacgaggaggagctcatcctcaggctccacactctcctcggcaacaggcctatcagctgtctctctagaagaacaaaccttttgttgtcagtgcagtctctgctctccagattaggatggtcgctgatagccgggaggctgccggggcgaacagacaatgaaatcaagaactactggaacagcaccctcagcaagcgggtcgccatgcaacggaccgccgccgccaccagcatgccggcggcggccaccaccagcagcaatgccgacgccgccggcgctgctgcacgacgccggcgatcgccggagccccgcacggtcgtcgtcagcccaatccggaccaaggcgctgcggtgcaacaacaacagcagcagcgggatagtggtggtgcagcaggcaggcgcctgcagccacggcggccgtccgccggagagcggcgcgccgggagacgcggcggctgataaggtggccacgccgcaggcggtgcagcagcagcagcagcaagagctggccggagcggaggatgacgacgacctgccggtgccggccgtctgtatcgaccttgacttggacgacatcgagctgggaggactcgacggcttcctgatcagcccgtggcgcggcggcggccacgacgacggtaacgccgccgccggagcggtgccgaatctgccgatgccgattggctatgagctcggcggcgccggtggcggtggcgaggctggagctgttgacctggaggcgttgctggggcagctggaagcagaggaagacgacgacggtgaccaccaccaccaccaccaccaccaccaccaccagtag
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| Protein seq | MEDDILVSYIAKHGEGKWGALPKRAGLKRCGKSCRLRWLNYLRPGIKRGNISGDEEELILRLHTLLGNRPISCLSRRTNLLLSVQSLLSRLGWSLIAGRLPGRTDNEIKNYWNSTLSKRVAMQRTAAATSMPAAATTSSNADAAGAAARRRRSPEPRTVVVSPIRTKALRCNNNSSSGIVVVQQAGACSHGGRPPESGAPGDAAADKVATPQAVQQQQQQELAGAEDDDDLPVPAVCIDLDLDDIELGGLDGFLISPWRGGGHDDGNAAAGAVPNLPMPIGYELGGAGGGGEAGAVDLEALLGQLEAEEDDDGDHHHHHHHHHHQ |
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| Function | Transcription factor MYB1 [UniProtKB/Swiss-Prot:A0A4D6Q411] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0021270 | OsKeNa_03g0021270.01 | Chr03 | 17725404 | 17729144 | - | NAM | ||
| CDS seq | atggaggacgacatcctggtgtcctacatcgccaagcacggggagggcaaatggggagccctccccaagagagccgggctgaagcggtgcgggaagagctgccggctgcggtggctcaactacctgcggccggggatcaagaggggcaacatctccggcgacgaggaggagctcatcctcaggctccacactctcctcggcaacaggcctatcagctgtctctctagaagaacaaaccttttgttgtcagtgcagtctctgctctccagattaggatggtcgctgatagccgggaggctgccggggcgaacagacaatgaaatcaagaactactggaacagcaccctcagcaagcgggtcgccatgcaacggaccgccgccgccaccagcatgccggcggcggccaccaccagcagcaatgccgacgccgccggcgctgctgcacgacgccggcgatcgccggagccccgcacggtcgtcgtcagcccaatccggaccaaggcgctgcggtgcaacaacaacagcagcagcgggatagtggtggtgcagcaggcaggcgcctgcagccacggcggccgtccgccggagagcggcgcgccgggagacgcggcggctgataaggtggccacgccgcaggcggtgcagcagcagcagcagcaagagctggccggagcggaggatgacgacgacctgccggtgccggccgtctgtatcgaccttgacttggacgacatcgagctgggaggactcgacggcttcctgatcagcccgtggcgcggcggcggccacgacgacggtaacgccgccgccggagcggtgccgaatctgccgatgccgattggctatgagctcggcggcgccggtggcggtggcgaggctggagctgttgacctggaggcgttgctggggcagctggaagcagaggaagacgacgacggtgaccaccaccaccaccaccaccaccaccaccaccagtag
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| Protein seq | MEDDILVSYIAKHGEGKWGALPKRAGLKRCGKSCRLRWLNYLRPGIKRGNISGDEEELILRLHTLLGNRPISCLSRRTNLLLSVQSLLSRLGWSLIAGRLPGRTDNEIKNYWNSTLSKRVAMQRTAAATSMPAAATTSSNADAAGAAARRRRSPEPRTVVVSPIRTKALRCNNNSSSGIVVVQQAGACSHGGRPPESGAPGDAAADKVATPQAVQQQQQQELAGAEDDDDLPVPAVCIDLDLDDIELGGLDGFLISPWRGGGHDDGNAAAGAVPNLPMPIGYELGGAGGGGEAGAVDLEALLGQLEAEEDDDGDHHHHHHHHHHQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0142600 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g29614 | RBH | 0.0 | 0.0 | 0.809338 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0142600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0021450 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0021330 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0021330 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0021170 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0278600 | RBH | 0 | 0.0542965 | 0.011735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0020900 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0282900 | RBH | 0 | 0.0543015 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0021160 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0021190 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0021270 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0021130 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0021000 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G020970 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0020850 | RBH | 0.0 | 0.0 | 0.0 |
