Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0020990 | OGI:03044340 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:17246154-17248564 | ||||||||
| Gene Symbol | TIFY10A, OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A | ||||||||||
| DNA seq | gggggggggggaaacaggcgtaagtgaataacaatcaatcttgtgatgtgtatatattagcagtacatttgctttgcttctacatggcaatgccaaagcaaaacgatattgaattggtacaaatgaggtttcttgggttgtactgattacagaatcttctgctttctatcatagcaatttgattcagattactggtcataatcatcagctactttctttacattcaatcctagtatatatatcagaagaacatcgccttgtcatcggatcatctcctaacacaaaacacccaattcaagagttgtgataacctctatgactgaatcatctgatgagaggggcatctcagaattgagcattgattcattggctcgattcctgccgcaagctcaggtcgggagcggcaacctgaggtcctaacccaagccatggctgactctcctgcagctccttcttgaccggagaagcatctgaaggggaaccctggtagggtgctttagcctgaaggctgaaataaaggagcagcaaaagttagatccaaaatctagaattgtgaattgtagaatttgactatactttgtgctgccatgatagcaagcataacctaccgatcctttcttttctcgaggaaccggtgaagcgacgccttcctagcctgaggcagatctgcaggatttgaagaacagttagtacaataaaatggattcacatgctacaagtatattccatcattcagagcaagcaataacagccgaggttagagtagttaccagcagcatttggacgaacaggtttcggggcattggcctgagcaacaggaagtgcacttgctggggctggtacagcagacaccttagtgttgtcggcaacggttgcagtagcggaagatggaagaaggacacagttctgcgctgtggaggaactcttgctggccatctgcatcaggtccttggccttctcagctgggaagtcatcaaacaccaggaccttcccaccgtagaagatggttaattggcgcttctcttgctccctgacaacggaaatacaagaaagcttagacaaacacaaccatttaaccaattttaaagcttacacaacagaaactatttactaactgatatcggtcagcaagcacccgccatctacgcatatgttcagaagaataacttgtagtaagtaccaactaatatttgggttttttgttcatgaatcactcgagtcagaacattttcactttcggatcgtgcgagcccactaagtctgaaacccgtggttattagttgcgagacatacatcgttgactcgcacaaaaaacgactcgcacaaaaaacagaagaaggaactgcagacttgcatagcaccagttctatattggattaaatatcgaacctttccatcacaccgaaatccatccctagaactctaaactaaattatatccattttacacacgaattagatttcagaccatgacccgagagctgaccagctcagctcctggcagcactaagatctggtcaggacaaggcaagatgttctcctcctcctccacactacctaccaaccactactttgtttggttggattgttgctattggtttctcctatcatgtgactacagctaaaggaaccgtatgaactgatagctgaagcaattcgaacaaagattgtgttgagtacctcgcatccggggtctccttcacggcagcagcttcagagccgaacccggaattctgggggaacagctccatggtctccttccccttgttcgcatcggcttcacctgaaaaatgatatgacatagtttttcagcccagattcacaacatcagatttaaaaaaaatgttgcgaattttacagctagctagatgcgcagaattggaatggttgagactggtttaagccgaataaaattctacatgggggaattctcgcttccaaagctcgaagaactagaccagatctcacggaaaccttcctaggggaggtttttttcacccaaaacccgtaaagataaagatccagactttgcagaaggaaaaaaagaaaaagaaagggaggtgacctctgatgccgaggccgagctcgccggcggctgcgccgttctgcctgacgtagcggctgagcaggctgcaggccatggcgaagctgctgctccccctctccccggatttcgcggaagccatcttcttcttcttcttctgcccacaagctgaatccttttctccgaacggagtcacggacccccgaaatcctcccgcttcgattcgattcgatcgagtcttctcctctggtcgcggttgcgggttgctcgtccttgtctgtctctgagttgtcttcctcctccgtccggcggttcaggttctatataagggacgcacgagactaacaataacaataatggtggggatt
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| CDS seq | atggcttccgcgaaatccggggagagggggagcagcagcttcgccatggcctgcagcctgctcagccgctacgtcaggcagaacggcgcagccgccggcgagctcggcctcggcatcagaggtgaagccgatgcgaacaaggggaaggagaccatggagctgttcccccagaattccgggttcggctctgaagctgctgccgtgaaggagaccccggatgcgagggagcaagagaagcgccaattaaccatcttctacggtgggaaggtcctggtgtttgatgacttcccagctgagaaggccaaggacctgatgcagatggccagcaagagttcctccacagcgcagaactgtgtccttcttccatcttccgctactgcaaccgttgccgacaacactaaggtgtctgctgtaccagccccagcaagtgcacttcctgttgctcaggccaatgccccgaaacctgttcgtccaaatgctgctgatctgcctcaggctaggaaggcgtcgcttcaccggttcctcgagaaaagaaaggatcgccttcaggctaaagcaccctaccagggttccccttcagatgcttctccggtcaagaaggagctgcaggagagtcagccatggcttgggttaggacctcaggttgccgctcccgacctgagcttgcggcaggaatcgagccaatga
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| Protein seq | MASAKSGERGSSSFAMACSLLSRYVRQNGAAAGELGLGIRGEADANKGKETMELFPQNSGFGSEAAAVKETPDAREQEKRQLTIFYGGKVLVFDDFPAEKAKDLMQMASKSSSTAQNCVLLPSSATATVADNTKVSAVPAPASALPVAQANAPKPVRPNAADLPQARKASLHRFLEKRKDRLQAKAPYQGSPSDASPVKKELQESQPWLGLGPQVAAPDLSLRQESSQ |
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| Function | Protein TIFY 10a [UniProtKB/Swiss-Prot:Q84R94] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0020990 | OsKeNa_03g0020990.02 | Chr03 | 17246154 | 17248026 | - | NAM | ||
| CDS seq | atgtcatatcatttttcaggtgaagccgatgcgaacaaggggaaggagaccatggagctgttcccccagaattccgggttcggctctgaagctgctgccgtgaaggagaccccggatgcgagggagcaagagaagcgccaattaaccatcttctacggtgggaaggtcctggtgtttgatgacttcccagctgagaaggccaaggacctgatgcagatggccagcaagagttcctccacagcgcagaactgtgtccttcttccatcttccgctactgcaaccgttgccgacaacactaaggtgtctgctgtaccagccccagcaagtgcacttcctgttgctcaggccaatgccccgaaacctgttcgtccaaatgctgctgatctgcctcaggctaggaaggcgtcgcttcaccggttcctcgagaaaagaaaggatcgccttcaggctaaagcaccctaccagggttccccttcagatgcttctccggtcaagaaggagctgcaggagagtcagccatggcttgggttaggacctcaggttgccgctcccgacctgagcttgcggcaggaatcgagccaatga
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| Protein seq | MSYHFSGEADANKGKETMELFPQNSGFGSEAAAVKETPDAREQEKRQLTIFYGGKVLVFDDFPAEKAKDLMQMASKSSSTAQNCVLLPSSATATVADNTKVSAVPAPASALPVAQANAPKPVRPNAADLPQARKASLHRFLEKRKDRLQAKAPYQGSPSDASPVKKELQESQPWLGLGPQVAAPDLSLRQESSQ |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0020990 | OsKeNa_03g0020990.01 | Chr03 | 17246154 | 17248564 | - | NAM | ||
| CDS seq | atggcttccgcgaaatccggggagagggggagcagcagcttcgccatggcctgcagcctgctcagccgctacgtcaggcagaacggcgcagccgccggcgagctcggcctcggcatcagaggtgaagccgatgcgaacaaggggaaggagaccatggagctgttcccccagaattccgggttcggctctgaagctgctgccgtgaaggagaccccggatgcgagggagcaagagaagcgccaattaaccatcttctacggtgggaaggtcctggtgtttgatgacttcccagctgagaaggccaaggacctgatgcagatggccagcaagagttcctccacagcgcagaactgtgtccttcttccatcttccgctactgcaaccgttgccgacaacactaaggtgtctgctgtaccagccccagcaagtgcacttcctgttgctcaggccaatgccccgaaacctgttcgtccaaatgctgctgatctgcctcaggctaggaaggcgtcgcttcaccggttcctcgagaaaagaaaggatcgccttcaggctaaagcaccctaccagggttccccttcagatgcttctccggtcaagaaggagctgcaggagagtcagccatggcttgggttaggacctcaggttgccgctcccgacctgagcttgcggcaggaatcgagccaatga
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| Protein seq | MASAKSGERGSSSFAMACSLLSRYVRQNGAAAGELGLGIRGEADANKGKETMELFPQNSGFGSEAAAVKETPDAREQEKRQLTIFYGGKVLVFDDFPAEKAKDLMQMASKSSSTAQNCVLLPSSATATVADNTKVSAVPAPASALPVAQANAPKPVRPNAADLPQARKASLHRFLEKRKDRLQAKAPYQGSPSDASPVKKELQESQPWLGLGPQVAAPDLSLRQESSQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.263255 | 3.328410 | 5.068489 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0402800 | RBH | 6.057935 | 9.444472 | 14.364074 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g28940 | RBH | 3.882925 | 5.819972 | 3.436733 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0402800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0021150 | RBH | 1.430905 | 7.399449 | 9.418235 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0023290 | RBH | 1.940408 | 18.189976 | 35.045589 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0021060 | RBH | 3.826884 | 57.733677 | 15.653512 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0021050 | RBH | 0.259269 | 1.063823 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0020880 | RBH | 9.534622 | 36.885536 | 11.913703 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0271600 | RBH | 30.918218 | 107.8474885 | 51.665453 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0020620 | RBH | 0.739244 | 2.441063 | 3.295089 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0274000 | RBH | 52.8940155 | 59.5783045 | 19.241417 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0020880 | RBH | 0.737993 | 0.673162 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0020860 | RBH | 3.415014 | 34.395580 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0020980 | RBH | 4.690939 | 41.718189 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0020850 | RBH | 1.407638 | 1.572435 | 2.718485 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0020730 | RBH | 1.072012 | 10.893313 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G020690 | RBH | 0.475676 | 10.713087 | 6.082007 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0020570 | RBH | 2.596920 | 20.366903 | 18.179619 |
