Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0020240 | OGI:03042220 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:16250764-16254102 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aatttttctgcggcttcttcttcttcttcctcctcctcgcgctcccccgattcgaagcgtgaagagaggagcggcgcttgcgagaggagagaggtaagcatcccggcgaagtttccccctctccctctctcttcctcctcgtctcgtttgctgcgaccccggcggggtattggggttctccgttgaggtcggttggttggggcttgggtgggttagggcttgggggcgggggtgaatttggcgagtttggggggttttctcgggtgatctgcttgtttttgcgccgattcgcccggtgaatgccagccccgtgcgatttgctggtttggttgtggtctgatcgtctgatattctggggctgtgtagtcctgtggtttttgactaggtaatagcagcgctgatgggatttgccggtcaattttaggtggttcagctttaatttacctgtaacgtttcgggaattagggtttctttggtgatataatggagtatgcctcataaacttgtgcttaggtttccccttgggattttgtaggctagtgcggctgtatgtgattggtacgaattatttactcaggtgaatttggactagctattttattgttgctgtcccctttctggacatgaatggatgaacctagcgtcattgattgctgatattgcaatgttatggttgaaagcgccatgtgtagtagtagtttattccccctgggttgcattgtaacttgcgttaatatggatactcagtattgtttacttggtatacctatgttgcattttctatatttgttgggttatactacctccgttttttaatagacgacgctattgactttttttcacatgtttgaccattcgtctcattcaaaatcaaaaatttacataattaaaatttattttgttatgagttgttttatcacttgtagtactttaagtgtgatttttatcttatacatttgcataaattttttgaatttttgaataagacgaatggtcaaacataagagaaaaagtcaacggtctcatctattaaaaaatggagggagtatgttattgtccaatatttattaatgacttatgtcatagggtatcaatcatctgttattagaccggggcatcgctcccatcatctgttattagaccgggggctgctaatgcgcgggtgatctccgcacccccctccccctatacgtccctttctcctccttcctcctccctactacagtacaccacaaaattattttaagaaaacaaaagttagacaaatttatgtaaagaaatattatataaaaaaaatttgaattcaaattcaaatttgaatctggtatgtaaacttttgacttgtaaactttgaatctataaactttagatgtatagaaacactatatatagaaaatatttgaattcaaattcaaatttaaatcagatataattcaaattcaaatttgaaacaggtatataaacttttgacttataaactttagatctataaattttaggtctataaacttcagatgtatagaaatactatatataaaaaatatttgaattcaaattcaaatttaaatcggatatataaacttttggtctctaaactttagatgtgtgaacttgaggtgtataaactttaggtgcataaattgtggtgccaaaaaagaaaaccagggggaggggggaggggggagggggaactgatccctggtacatcgccagggcgatcgatcgccaaagaggatttccgtattagacctgtaactgtaaggaatatctccttaattctgtttcaatgttagattgtggatgtacagaaatcaagctatgactgacataatacattgctttggcataatggcactcttatttttattctatttatcagaatgccgtgtattagtttgttcagttaattcaatgctgtatgttttactgtgtcgggaacttacagatgttctctttaggtttctatccttcagtaagtagagttgttgctttgcttgaaacgttcaatttaaatctgtttacagagataggctgttattcctgattactattttttatatagttactttgccatccgttaatcaggttaagaacaataaattgtatccataatcaatgttttcaatggaaatcataaaattttgaccgaaacatgttgctttcttaggtcaatctctagcatattgtattttttgaattgttacttgtttctgtagtgtttttttacaggaagagcttacttccactctagaattatattacatttttgtcacatcatgttctgtctgtaacatgttattcctttctgtaacatagatggcccgtaccaagcagaccgctcgtaagtccacaggaggaaaggctcccaggaagcagcttgcaaccaaggtataattcttttcatacttgcgttttgctttgttaaccggagtgtgattttgacatatgggcttacactaccatctctgtgcaggctgctcgtaagtctgctcccaccactggaggagttaagaagccccaccgttaccgccctggaactgttgccctccggttagtatcaaattcctgggatggtttcctccttgtggtctttgatatgcttttgcttatttgttttgctactattgtgcttaaaacagtgagattcgcaagtaccagaagagtactgagcttttgatcaggaagctgcccttccagaggcttgttagggaaattgcacaggacttcaaggttgatatctcaaaagttcatggcataatttgattgctttcaaatttggattgtttgtgatggctgatcgattgaacttggtcctgtaatttgcagaccgatctgcgtttccagagccatgctgtccttgccctccaggaggctgcggaggcataccttgttggtctcttcgaggacaccaacctgtgcgctattcatgccaagcgtgtgaccatcatgcctaaggacattcagctggctaggaggattcgtggtgagagggcttaaattcccctcggcgactcctttgacaaatgaagcatgcgtcgtagtgttagtagtgggtttaatcttttgcttataagaacaatctgagtagggtgtattttgtggaacaatatgtttctctctgtgacatgatggtgctgtattcgtcttattggtggatctgtcaaaaatactcagaatattgtcagtgtgtttggtgactcgtattttgttagtcggattcgtttgcgtcttattctagcggtgctgcctctttggcactgtgcatggctagatacaattacattgtaattcacctgtctctaatccgtgttaatgtaatgttccgttgctgttcgtgtg
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| CDS seq | gagtgtgattttgacatatgggcttacactaccatctctgtgcaggctgctcgtaagtctgctcccaccactggaggagttaagaagccccaccgttaccgccctggaactgttgccctccgtgagattcgcaagtaccagaagagtactgagcttttgatcaggaagctgcccttccagaggcttgttagggaaattgcacaggacttcaagaccgatctgcgtttccagagccatgctgtccttgccctccaggaggctgcggaggcataccttgttggtctcttcgaggacaccaacctgtgcgctattcatgccaagcgtgtgaccatcatgcctaaggacattcagctggctaggaggattcgtggtgagagggcttaa |
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| Protein seq | ECDFDIWAYTTISVQAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Function | Histone H3.3 [UniProtKB/Swiss-Prot:Q71H73] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0020240 | OsKeNa_03g0020240.01 | Chr03 | 16253192 | 16254102 | + | NAM | ||
| CDS seq | gagtgtgattttgacatatgggcttacactaccatctctgtgcaggctgctcgtaagtctgctcccaccactggaggagttaagaagccccaccgttaccgccctggaactgttgccctccgtgagattcgcaagtaccagaagagtactgagcttttgatcaggaagctgcccttccagaggcttgttagggaaattgcacaggacttcaagaccgatctgcgtttccagagccatgctgtccttgccctccaggaggctgcggaggcataccttgttggtctcttcgaggacaccaacctgtgcgctattcatgccaagcgtgtgaccatcatgcctaaggacattcagctggctaggaggattcgtggtgagagggcttaa
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| Protein seq | ECDFDIWAYTTISVQAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0020240 | OsKeNa_03g0020240.02 | Chr03 | 16250764 | 16254102 | + | IsoSeq | ||
| CDS seq | atgctgtccttgccctccaggaggctgcggaggcataccttgttggtctcttcgaggacaccaacctgtgcgctattcatgccaagc |
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| Protein seq | MLSLPSRRLRRHTLLVSSRTPTCALFMPS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 12.856478 | 55.929104 | 65.470566 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0390600 | RBH | 64.936836 | 74.113609 | 149.208862 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g27310 | RBH | 46.777130 | 40.489376 | 39.042908 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0390600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0020370 | RBH | 35.576706 | 330.761414 | 156.147278 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0016080 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0020260 | RBH | 58.125580 | 255.275253 | 190.727997 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0020260 | RBH | 11.082225 | 10.154201 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0020080 | RBH | 162.954422 | 261.309448 | 333.488525 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0259700 | RBH | 347.6779635 | 483.2599945 | 719.149048 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0019860 | RBH | 19.739012 | 22.326208 | 35.148224 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0260700 | RBH | 438.1340025 | 471.0379945 | 678.922363 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0020070 | RBH | 7.892414 | 3.680460 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0020090 | RBH | 21.851023 | 272.491760 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0020180 | RBH | 232.325485 | 373.269104 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0020050 | RBH | 42.162720 | 31.841496 | 51.499107 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0019920 | RBH | 23.651936 | 178.578613 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G019950 | RBH | 20.314499 | 61.367908 | 98.349304 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0019810 | RBH | 59.522476 | 486.837616 | 275.103149 |
