Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsKeNa_03g0018720 | OGI:01011440 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:14853252-14854843 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | atggatgaaggagtgaagaaccacatccctttggatggtaccacagggtctaggtatgtttttctgatttgatgattgattttttttcgttggatttatgggtgtgaacttgaatgattctggatcattgattcaggcaaattcttatggatgaatgcaacccttccttggacatactggatggtgagtcaatcccacatggtgttcagacaaggtgagatcgatcaacataccatattttcagaattctagaaataatcggccgatactgatacatattgagttgtgatatgcagccctgtagctatggaagaggacgtgccattgatggttggctcgcatgattcaggttgtggaacttcggtgacaaggtatcttttttggcatagttgtcagttgatcatagttgtttcttcccgtctaattcatcttgtgagcatggcaagccaaaaactgcattgacatcgttgggaccaaatggcaactcttggttgaaatctgtaaaaccttgctcagaagccatgccccaaactgcctgtttaccttagtaagtttgatatccaaaattccatcaaatccaatttcagcaatcaactccttcctatcatcgaagtctttagtgatattcactatgcatttgggctggcacctgcaattgataccaaaggtagtgttgtctttcttctgtctatttaataccctgctttgccgatacctagatacctcccctcccccccaaatcttttgaaggctaccccttgtgcctgagaccttgaaagcctgtggataattatttttcagaacacaaatagaacatatactagaggctgagaaaaattgagcgtatttaaaaattcaacatgtacttctgttttaaaaaatctgcatataaccaaaatacatggtacactcatatcactatcagaaacttcaaagtatttattggataagagtggaatatatgtttaagagaaagtatagcacaaaggaaacatcatacgattattagttgttttaaactcgattctttcaggccttcgcatgttcattatgttctcctttgaaattccacagcgtacttcatagactagacttctatattgttcacattttttaagtatttgacaactacaaaaatatattgactaaccaaatggtgaagatatgccaaccaaaatatcaagatggactaggggtacaaaaccatgatatcaagaatttatgtttaccgcaaaacaaaaaaaaaagaatttatgtttaccaagaaattactaatccagttggttagtgatgaaggcctatggtaggacctttcgcgaaacaaatttttgatgggaaaaacctctaacccatgtcttataaacctgtgatatcctattttgtgcctatattaatgcggatgaaactccaaattttacattctgtgactttagatatgaagagggaacagagaaaagatattgggaaggtacgtcgttaagaacatgtcctctcaaatatcgatatccttcttcatatagcatgtctcaatgaaaacattgctattttggcagattttacgagtacaatacctatgctctgatctttggtag
More
|
||||||||||
CDS seq | atggatgaaggagtgaagaaccacatccctttggatggtaccacagggtctaggcaaattcttatggatgaatgcaacccttccttggacatactggatggtgagtcaatcccacatggtgttcagacaagccctgtagctatggaagaggacgtgccattgatggttggctcgcatgattcaggttgtggaacttcggtgacaagcaatcaactccttcctatcatcgaagtctttagtgatattcactatgcatttgggctggcacctgcaattgataccaaagatatgaagagggaacagagaaaagatattgggaagattttacgagtacaatacctatgctctgatctttggtag |
||||||||||
Protein seq | MDEGVKNHIPLDGTTGSRQILMDECNPSLDILDGESIPHGVQTSPVAMEEDVPLMVGSHDSGCGTSVTSNQLLPIIEVFSDIHYAFGLAPAIDTKDMKREQRKDIGKILRVQYLCSDLW |
||||||||||
Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsKeNa_03g0018720 | OsKeNa_03g0018720.01 | Chr03 | 14853252 | 14854843 | + | NAM | ||
CDS seq | atggatgaaggagtgaagaaccacatccctttggatggtaccacagggtctaggcaaattcttatggatgaatgcaacccttccttggacatactggatggtgagtcaatcccacatggtgttcagacaagccctgtagctatggaagaggacgtgccattgatggttggctcgcatgattcaggttgtggaacttcggtgacaagcaatcaactccttcctatcatcgaagtctttagtgatattcactatgcatttgggctggcacctgcaattgataccaaagatatgaagagggaacagagaaaagatattgggaagattttacgagtacaatacctatgctctgatctttggtag
More
|
|||||||
Protein seq | MDEGVKNHIPLDGTTGSRQILMDECNPSLDILDGESIPHGVQTSPVAMEEDVPLMVGSHDSGCGTSVTSNQLLPIIEVFSDIHYAFGLAPAIDTKDMKREQRKDIGKILRVQYLCSDLW |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | 0.0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g25020 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0018890 | RBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0018750 | RBH | 0.0 | 0.0 | 0.000000 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0018800 | RBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0236800 | SBH | 0.0750765 | 1.196494 | 0.003822 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0032700 | RBH | 0.053046 | 0.000000 | 0.272941 |
Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0018590 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0018620 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0018680 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0018550 | RBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0018460 | RBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |