Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0017560 | OGI:03034670 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:13424387-13428307 | ||||||||
| Gene Symbol | BIP102 | ||||||||||
| DNA seq | ggccagccaaaaggacaagaaactttagttcacatagaatgagcaaaagcatcatatgctctccaattccaaaattcagtaggcaattgaatacaagatccatgagtaacaagtccaaacttgatgcctatcctacaactaaccggcatggaaaaactcggaatgttgcattttacagagcagcgattcttcaaccctatgctactcaagataacatgtccttctccagtgtatccttcattcatcgctatggtgtttcttctttttcttcttctctttcttgccagactcctcggtttccatggcaacatcctcggcatcttgtgaatcagatttcttctttttcttcttctccttcttctcaccttctgtagtggccactggaggttcctcgctctccttggacgtctttttctttttcttgccaccgtcagcatcggccgcaggagattcctcgctctctttggacttctttttcttctttttcttttcaccttcttggtcaccatcctctttagtggtcttctctgctggtgcaggctccgtctcttgatgtttcctcttcttcgaagcaccttcaggcttctttggagtttcttcagtggattgtccaagtaccagatcagccgcaggattgtatgtctgggatcaagtgcaaaacatcaggttgagatgacttctgaataacagatgcttacacaagtaaaaagagtgccttggtaccaataacagatgtttgctaagtataaaatgttagtaatatacacaagacatctttacagtgaccggtcaaaatgttaggtatctaacaaagaacaactgccttgacaactagtatttttcttcaagtactggttaagaataacacaagacgttaagcttcctgaaaatactttcaagagagaattcgtgataccacctaccttagcaggagtgattaaagccccagcacccttcttccggtccttttcatacacttctatcttgggctttcctttagtggaacctgcagacctgccaagttctttaccctcgagaacacgaagccgcgtctcaagctgtccaaatggatcacatgtcaatctcaatgggtcagaaaatattatggacaaaggaaatgtatttccacaaagtaaataccttgactcgactctctagaccaatggagttgtcttcaccatcaccaagggcatcataccgaatggcaagagcagtttttgctgcaagagaacgagaaatctttcccttgtgctttggagctgcttgaccaattagggatgcatggtaaatgagaccatacttcggcgtagcatgttttgtcttgagagctctgaacaaagcctgaaaaaagaaaaacagatgtcagcacaacacagaaaaattgagttgtttgaatcaaacttacctcccagacttagacagaaatataaggagatgaaaaaaaggaaagttacacaaaacaacaatcaagcatcccttccccatgtgcctagagaacccatcatccaagggacaattttgcataaactacaaagagtggaaaataattaaagagttcaaggttcacaaatagcaactgaccttctctgcaccaagtatctgaattgtgctgcccggctgcttggccagatttaccaaactgccaccgtgtgcaataagtcgagcaccaaccaattcgcccacaagtgcagtcaaatttggtgcgatagtgttcatcctgcttctcagataatcaaacagctgggctctgtactcagaaagagccaacacctgatcacacagctccctgatatttagcaaatcaagttcactaacttctgttcccatggatattactgccgcctcttttaactgtgcttcaacctcatcatctgagagtatctggaaaaaagcatttgcttcatattcaagaaccagttgtggtgtatagtcatggccgttaaattcagatcaggtatgtccagaatttacctcagagaaatcaaggctttctgcgttagtccgatcacccatcatcttcacaacttttgcgtactgtatgttatcagctacaattttagtgagctctgggaagtgccacccataccattcacgaaccctcatggcgtaagtgttgagctccttatcaagatcatccaataatccaatggcctgaatgatcatagtatcaacctgtataaccagaaacaatttacctcagttagcttgtcaggatggggtcatgtacaaataaaaacagtaacgttaacctcagtccatcacaatgctgaagtgctagactaattaattgcaaatggaagttaaatgtaaagttaacagaagcatggcattgaaaaatctagtttggaaactaacaaaagataatgatgttgattcatatgactcagagccaggaagaagcactggatagcgtgatcaataaatatgaatagtggaataaataaaagactaaccttttcaggactgaacttcagcttatatctagacaggctgtgggacaatccaaggctcattggaccaaggtcttgtgcacccaaaccagatataagttcagtgagctggttccttaaccctctcatgagctccatcacagcactgttatgaaggcaatcaattttctgcaaaagcacgtcaaattataagcatgattgtttgttcaacataaacaaagcaaccaaggaacctactaaccagcttctcctttatagcatttccaagtttagagtcagctacagctaacgtttcaccctcacagtgcttctgcaagaatttgcgcaaacccttggtaggcttgctgtcaataatgagggttgcagctgaaagggcatcggaggtgttctcaaacttgttgaaagccttcagctcgaccacctgaatatagttaatttgtttggtcaggaaagaaaatcaactcaaaataataaaataaacagtagtaagaggaagatatggagatgctcatcacaattcaaagtagaaaagtaacacagcttatgtatataatactgttctccacaccatgtcattccaatgtgcatcagggcatttatattataggagactgaactaaccattaccctcttctctcaccatacaaattacacatccaaaacaaaactgcggttcagagcatcagagaattattactcagttgtatttttttattcctgaaaatcactttgcttctctcaaagtcacaaaaccccaaaaagaaagaaggttgtaatcacctatgttgaatcaacctactgaagccatgggtcctggcttatttaactccataaatatgagatatcttgtgcaataacgagattattaaataaaaaaagaagaagaatattttgtcctgggagtaacgtgaaaagaaaaaacacaaacctttctcgccgagtcagacgtcgtgaactccttccataaatcctaaaaaaggatgaacacaaacgcgtagcgcaattagtccaccgaacactccacagcagcaaagcaaacgaagagctgaaaccgcggaggcggaggcggtggcggaagactcacctcgaccttgtcgagcttcccttcgtcgagcaccttgaagagggcgaaccccgcgggcgtctcgaacagcaccagcatctctctcaccgcacgagaacacctacacctggatcacaaacccaaatcAaaaaaaaaaaaccacaagatcgaaagcttgggtcaaaccgagcagctaggatatatacaccctcaagaaaagaaaatggcgcaaaccttggctcgattggacgcgaatcgacgatggggggaggagagcgcgaggcgaaggtccggctgcggcgagatggtggggagggggagtaggcgccgccgccgccgccgccgccgcgagggtttagagcgaggtgttgtgggatgcggcgggagagggggtgccggcggcgagag
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| CDS seq | atgctggtgctgttcgagacgcccgcggggttcgccctcttcaaggtgctcgacgaagggaagctcgacaaggtcgaggatttatggaaggagttcacgacgtctgactcggcgagaaaggtggtcgagctgaaggctttcaacaagtttgagaacacctccgatgccctttcagctgcaaccctcattattgacagcaagcctaccaagggtttgcgcaaattcttgcagaagcactgtgagggtgaaacgttagctgtagctgactctaaacttggaaatgctataaaggagaagctgaaaattgattgccttcataacagtgctgtgatggagctcatgagagggttaaggaaccagctcactgaacttatatctggtttgggtgcacaagaccttggtccaatgagccttggattgtcccacagcctgtctagatataagctgaagttcagtcctgaaaaggttgatactatgatcattcaggccattggattattggatgatcttgataaggagctcaacacttacgccatgagggttcgtgaatggtatgggtggcacttcccagagctcactaaaattgtagctgataacatacagtacgcaaaagttgtgaagatgatgggtgatcggactaacgcagaaagccttgatttctctgagatactctcagatgatgaggttgaagcacagttaaaagaggcggcagtaatatccatgggaacagaagttagtgaacttgatttgctaaatatcagggagctgtgtgatcaggtgttggctctttctgagtacagagcccagctgtttgattatctgagaagcaggatgaacactatcgcaccaaatttgactgcacttgtgggcgaattggttggtgctcgacttattgcacacggtggcagtttggtaaatctggccaagcagccgggcagcacaattcagatacttggtgcagagaaggctttgttcagagctctcaagacaaaacatgctacgccgaagtatggtctcatttaccatgcatccctaattggtcaagcagctccaaagcacaagggaaagatttctcgttctcttgcagcaaaaactgctcttgccattcggtatgatgcccttggtgatggtgaagacaactccattggtctagagagtcgagtcaagcttgagacgcggcttcgtgttctcgagggtaaagaacttggcaggtctgcaggttccactaaaggaaagcccaagatagaagtgtatgaaaaggaccggaagaagggtgctggggctttaatcactcctgctaagacatacaatcctgcggctgatctggtacttggacaatccactgaagaaactccaaagaagcctgaaggtgcttcgaagaagaggaaacatcaagagacggagcctgcaccagcagagaagaccactaaagaggatggtgaccaagaaggtgaaaagaaaaagaagaaaaagaagtccaaagagagcgaggaatctcctgcggccgatgctgacggtggcaagaaaaagaaaaagacgtccaaggagagcgaggaacctccagtggccactacagaaggtgagaagaaggagaagaagaaaaagaagaaatctgattcacaagatgccgaggatgttgccatggaaaccgaggagtctggcaagaaagagaagaagaaaaagaagaaacaccatagcgatgaatga
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| Protein seq | MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTTSDSARKVVELKAFNKFENTSDALSAATLIIDSKPTKGLRKFLQKHCEGETLAVADSKLGNAIKEKLKIDCLHNSAVMELMRGLRNQLTELISGLGAQDLGPMSLGLSHSLSRYKLKFSPEKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIQYAKVVKMMGDRTNAESLDFSEILSDDEVEAQLKEAAVISMGTEVSELDLLNIRELCDQVLALSEYRAQLFDYLRSRMNTIAPNLTALVGELVGARLIAHGGSLVNLAKQPGSTIQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKHKGKISRSLAAKTALAIRYDALGDGEDNSIGLESRVKLETRLRVLEGKELGRSAGSTKGKPKIEVYEKDRKKGAGALITPAKTYNPAADLVLGQSTEETPKKPEGASKKRKHQETEPAPAEKTTKEDGDQEGEKKKKKKKSKESEESPAADADGGKKKKKTSKESEEPPVATTEGEKKEKKKKKKSDSQDAEDVAMETEESGKKEKKKKKKHHSDE |
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| Function | Probable nucleolar protein 5-2 [UniProtKB/Swiss-Prot:Q9MAB3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0017560 | OsKeNa_03g0017560.01 | Chr03 | 13424387 | 13428307 | - | NAM | ||
| CDS seq | atgctggtgctgttcgagacgcccgcggggttcgccctcttcaaggtgctcgacgaagggaagctcgacaaggtcgaggatttatggaaggagttcacgacgtctgactcggcgagaaaggtggtcgagctgaaggctttcaacaagtttgagaacacctccgatgccctttcagctgcaaccctcattattgacagcaagcctaccaagggtttgcgcaaattcttgcagaagcactgtgagggtgaaacgttagctgtagctgactctaaacttggaaatgctataaaggagaagctgaaaattgattgccttcataacagtgctgtgatggagctcatgagagggttaaggaaccagctcactgaacttatatctggtttgggtgcacaagaccttggtccaatgagccttggattgtcccacagcctgtctagatataagctgaagttcagtcctgaaaaggttgatactatgatcattcaggccattggattattggatgatcttgataaggagctcaacacttacgccatgagggttcgtgaatggtatgggtggcacttcccagagctcactaaaattgtagctgataacatacagtacgcaaaagttgtgaagatgatgggtgatcggactaacgcagaaagccttgatttctctgagatactctcagatgatgaggttgaagcacagttaaaagaggcggcagtaatatccatgggaacagaagttagtgaacttgatttgctaaatatcagggagctgtgtgatcaggtgttggctctttctgagtacagagcccagctgtttgattatctgagaagcaggatgaacactatcgcaccaaatttgactgcacttgtgggcgaattggttggtgctcgacttattgcacacggtggcagtttggtaaatctggccaagcagccgggcagcacaattcagatacttggtgcagagaaggctttgttcagagctctcaagacaaaacatgctacgccgaagtatggtctcatttaccatgcatccctaattggtcaagcagctccaaagcacaagggaaagatttctcgttctcttgcagcaaaaactgctcttgccattcggtatgatgcccttggtgatggtgaagacaactccattggtctagagagtcgagtcaagcttgagacgcggcttcgtgttctcgagggtaaagaacttggcaggtctgcaggttccactaaaggaaagcccaagatagaagtgtatgaaaaggaccggaagaagggtgctggggctttaatcactcctgctaagacatacaatcctgcggctgatctggtacttggacaatccactgaagaaactccaaagaagcctgaaggtgcttcgaagaagaggaaacatcaagagacggagcctgcaccagcagagaagaccactaaagaggatggtgaccaagaaggtgaaaagaaaaagaagaaaaagaagtccaaagagagcgaggaatctcctgcggccgatgctgacggtggcaagaaaaagaaaaagacgtccaaggagagcgaggaacctccagtggccactacagaaggtgagaagaaggagaagaagaaaaagaagaaatctgattcacaagatgccgaggatgttgccatggaaaccgaggagtctggcaagaaagagaagaagaaaaagaagaaacaccatagcgatgaatga
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| Protein seq | MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTTSDSARKVVELKAFNKFENTSDALSAATLIIDSKPTKGLRKFLQKHCEGETLAVADSKLGNAIKEKLKIDCLHNSAVMELMRGLRNQLTELISGLGAQDLGPMSLGLSHSLSRYKLKFSPEKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIQYAKVVKMMGDRTNAESLDFSEILSDDEVEAQLKEAAVISMGTEVSELDLLNIRELCDQVLALSEYRAQLFDYLRSRMNTIAPNLTALVGELVGARLIAHGGSLVNLAKQPGSTIQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKHKGKISRSLAAKTALAIRYDALGDGEDNSIGLESRVKLETRLRVLEGKELGRSAGSTKGKPKIEVYEKDRKKGAGALITPAKTYNPAADLVLGQSTEETPKKPEGASKKRKHQETEPAPAEKTTKEDGDQEGEKKKKKKKSKESEESPAADADGGKKKKKTSKESEEPPVATTEGEKKEKKKKKKSDSQDAEDVAMETEESGKKEKKKKKKHHSDE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.598230 | 10.269666 | 8.837126 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0350300 | RBH | 5.495000 | 5.955039 | 14.902528 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g22740 | RBH | 4.194284 | 4.307640 | 4.473538 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0350300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0017730 | RBH | 2.639054 | 8.434514 | 13.309617 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0017550 | RBH | 0.250420 | 11.148376 | 7.111909 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0017570 | RBH | 3.000154 | 36.650173 | 22.819723 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0017580 | RBH | 0.454670 | 2.151883 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0017360 | RBH | 7.731808 | 64.935211 | 37.326317 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0215500 | SBH | 33.137274 | 76.631111 | 38.72077 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0017210 | RBH | 0.964604 | 2.587915 | 3.425437 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0220100 | RBH | 29.8352825 | 133.7655105 | 117.9316525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0017440 | RBH | 0.312660 | 1.048256 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0017470 | RBH | 1.271558 | 66.961494 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0017530 | RBH | 7.556319 | 80.780380 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0017410 | RBH | 1.201419 | 4.450821 | 2.834940 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0017310 | RBH | 0.481125 | 21.445019 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G017290 | RBH | 2.516196 | 51.435905 | 14.120393 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0017260 | RBH | 5.352619 | 55.353157 | 27.466902 |
