Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0016680 | OGI:03033080 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:12720017-12730263 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aagtaaacagtgtatatatcaacagtttatgtgataaatttaccttttgaaattataaattataaagtagtgcttaatttactccaaaattatcattaacaccgctatttactacaatgatcatcagagagtcaaatattatcggttttggcatctagtttcttctcagcttcacttatgccctccagttcccgcaacaaagcagtgtgctttctcatatccccttcctggacactttgaggtgccttctcgcgataaccagaagcatccatcatgtgtgtcacagcatggtgtagcctgcattgtatgatgagaccatgctaccgatgcttgggaataacagagaaatatgtccagattaccacaaaatttaaggacaagaaaagataagcacacttacttttggattccatctctcttcttccttagcttttcacgctcagcctctgcatttatggctccttgaagcttaaggtacaccgacaaatctttgttaacaacagcgattgcacaatcagctggagtttcgtcattctctgtcaggatctgaataattcccttcaccttagcttgattttcaagaacattgtaactaaacatataaatgtgaaaatctaaaggaaacaaagaggaaatattgtttggcaggagtcagtcgttataaagtgttttttgaggcaatcaagctccattaagtttggacataaatgtccatccacaacggagaaactaaatgcagaccgtgcaagaaaaaaccattaagaatgtaaaaaaaaatgtaaacaggcatacagaaatgtagacagaaccttaagaaatgatacggaagaaagacacacaattagagattgatggcattgaatagtggcagtgacatcttggcttcggcagagtgcaaaagcaggacgtctgttcagagcaaaaggataaacaataagatattgcatttcgcaaagacagctttgttaacaaggccaataatgcaggcaaataccaaacaaagaaaccagataaccatacacacacctttcttttctttctgttcgtgtcttcaaagaccttattttgttcacggtgtctaagacaatgtccatttcattttcaagattgtcattagtccattcctgtcataaagaacaacatttttccatgagttaagaagttctcaaagactaagcacctatttgggggagcttctggcagctacagtccaagaatctctagctcccccaaatagttcaaaatccagaggctaggtaacccagcttttctagattctcacttgctggctactcaccagcttcatcttagaatctctagctccctaaacagagcctaatttctctaaataacactcctatttaggaaacaggtattacctcaacgagagatggatattccgaaatcataattgaatcttgcctacaagaatatttgggttgtggaagatgctgccatagctcttctgttatgtaaggcatgaatgggtggagcaagcgcaaaccagtctccaggcaaacccatagagtatctctggaggcgactcttgcagattcaaactcttgaggttcgttgaagaagtaaggttttatagcttctataaatacatcacatagctggtattgccaccaagagtatatagcagatgttgcatcagagaatttgtatgcttctaaagaggtaacagttttgccggtagccttgtttagtgctgagagtatccacttgcagattggtggcatgatagacacgtcgacagttgcaggtggactgtagtgaacaccaagcttgcccatggcaaaacggatggcattccacaatttattgcaccattgtcggtatccaaccactctcttgatatcaagatttatcctgtcagactgaaaaaaggagataaaacctgaactgctagtgaagcaaaactcaaatgaaaatgtgattacaaacctgagaagtgtaagaaatcagtgcaaagcggagggcatcagtaccacattcagcaattccatcaggataatctgtcagcttccgttcaaggtttaattcatctggatccagattaccttcttccagacgttttacaagaccctcgagtgtcatgccatttatcacctcaagaggatcaatgacattaccaagtgacttgcacatttttcggccatgtgtgtcgcatacaataggatgcaaataaacctaagaaaaaagcagtcattagttacagcgcagcagataattaactgccttacctggtgtcagttaatatctatcagtcccttacgatatggttacgatattaccaagatacagagttcattcagaaggaaaccagtatttatctgatttcaccgtgcagcccctgatctctcactgatctcttgggtgtttaatacacacgcacaaactctttttactagctctctagtgtgaacacaactaatgaaacgttggtagctgatctatagtgggtgatggccacagtactatatattctggatcaataaatggctacatgggacgtcagtagctgaccttgtctgtaatttgcgggccttagtcaccaaatgctaacggaaacaaagtatggttcagcaacctcttcatgaacattgcggggttaggacatcaagggatctctctatgcatccttacgctggttcaataacagctttgggaaatcctgcaactggagacacaggatgaacacgttttgatccactcgacatctagtcatactatgctaaactggcctacagcttgcttctgttggtagcatcagttttcagcattggtgttgtcatcggaagcggtgggtcattggatggtagatagacttgcacgatgccttggtcacttgtgtgatcaggagggtctcttgcgtatttgctcgtcaggtatgggtatagcttgaggtgctacccctgccagggtgcatcatctattcatctcccaccaactcgaaccagtgggtccttcatggaatggtggcagcatgcaagcagcgttcaacagtcacacgaaaggactcgatcatcctggacgcaaggtgtatttggaaacaccagaacacacgcgcctttgatggtgattcaaggatggttcaattaatctattcttatagattttattgttcagcaaagtaaagcaaaatttaaccatcttaaggggatatagaaggcaatgataggctccaaacaagaacaaccaacatgaatgaaatgcatattaaagaccactacaatcgtaaaatataattctaattggcattgaatgggggatttgtgctataccttctgaaacggcacatcaccaccaagttgtgttcccatcatcaccatccgtgctacccaacagaagagaatatcaagtccagtttctagaactgaagtagggtagaaagaacggaggtcagcagtatcatctggccaaccaagtactgctaaggggaagagagcagatgaaaaccatgtgtctagcacatcaggatcctgatttaggatgaatttctttcctggataacttttctgtgcctcaacgcttgcagcactttcacttttggcgactatccagcggtcattgtcagaacctagagttttctcctggtcatcttctagtgtcacataccatgcaggtacacggtgtccccaccaatgttgccttgaaacacaccaatcacgtatattttcaagccatctgcaatgacacaagcaattgttctatcatttgttttctgtttatttcattgatttgacaaatgacatgattttttaaaagatgtgacaaatatataacaagtatgtaaaagtggataaatgtacctataccagtcttgttcgtactgcgggggaatgatctcaatcctcttagaccttacagcatcaagggctaccttggccatggtgttacaattaacaaaccactgcggggattttatcataggctccactatgtcgttagttcttgaacaaatgcccaaactcgtttcggtattctttgcacccttgtacaagcccttaattagcataatcaaacatcgtcagaagtacagaactatttagaacgaactttatgaaacaaaaagaaggcaaagactccctacccaccaagcacacaggaaaaacaaaacattttaagggtaaagttttatcactagcttccacagatatgcaggatgccactaaaacatgagattctcttaataccctaattatgaatgcccattacacaatcccaaaggaatgacatgatgcaagttatagttttaatagagctctgttaaagttttgcatgccatgttgtacattataatgcatatctttgcctatcttttagagattctgatgccatagaaattttctgaaagtattttccctcaaaaaaaattttctgaaagtatgattaaacaaatccattaatacctttgccttcagtgcttcaataatgcaaattcgagcagtgaatcttggcattccttcaaattgtgcacccccattgctgtttattttcccatcatctgtcaagatattaatgaactgaaggttattccgtcttccaacctcaaagtcatttgggtcatgtgcaggtgcaatctgcataaaagaccagcagacaacaaaataagtcaagtggagatagcgagtgagcaagatccaactatgtgaaacaagagatagaaacaaatagcactaggcagaaataaacaagtaaaacaaggcactagctcctaccttgacagccccagtaccgaaactgggatcaactatctcagcatcacagattattttgagttttcggccattgaaggggtggactgcataccgtccatgcagatgcatataccttttatcctcaggatgaacagctattgctgtatcaccaagcattgtttcaattcgagttgttgcaacaacaatctcacctagcccttcttcaagaggataggcaaaagatatcaacacaccaaattgtacaggagtagcataaccagggatctttaacattgtttcttctttaagatcaatatgatcaacctgaaaaaacagcattttccaatgaagaaagacatcttagtcatgtatgcgtagatttaattcgtttataataaacaaaaaaaatgttccacagacctctatctcagaaattgaagtcagaagtgtgcagtcccaattcacaaggcggttatctctgaaaaggaacaaatcatccgcaacatgtgaaaaattagctggcaactgaaaaacaagaatgtacaaataaaaaggtttatcatagcaacatcaataggtgaaaattttccatgttaacactcaaaagtcaaaacacaaagggtgaggtaacttacctatatatcaggccttccttgtgtaaccttacaaaagcttcagttacagcatttgacctttgctcatccattgtaaaagcctgatgccaggttgagattaggttactagagagttcgaattgcaaaactatgcatggttcaatagcaagtaatgtttttccgtaactgaaagaaatggaaatactacctcacgagaccaatcaagtgaggccccaaggcggtgcaattgattcaatatagtaccaccataccgctctttccatttgagaacctttccaacagattgaagagaaaacggaataagaaaatgtcaaaaaggaaatggtactggtgagggacatcaaatgattattcataaactaaaaagaactacaggtgaatctggatttttgctattaagaacaagaagtcaatttgagctgcatcataggtgatttgcattactcataggtgattgtacctacgcggtcaagctcctaacctgttcattgcattaatgtgccaaatttctctatttaacattgcattactctaacctgttgaaataagtacaatcacctatgaaggcctaggtacaagaagttctattgataaggttgctattaaaaacattgcctacaagtttactcttaagtgtcattgagtaatagaagagttcttatgagtaatatcttagttgtcattttggctgtcatcttagttgtatgtgtattgtgtaagaccttggagcctataaatagaggcattgccctctagttttgtagttcacatgtattcacaaccctatcaatagaactcgatgttcctatttcagatcttggattagatctctttcttgagttttaacttaagctctattatctgtgggattcagattgcccttacggcattatcgactagcacattgaatctgttccttgaacacattgtgttacatctacctatcagcacatcagagtggttgctccaatatagtatgctgcatcacatcaggtaaaagaaaactcaaccctggggggagaccatcagggctttgttctaagaaggtgccacacttcaaacctcggtcaggtgggagttcgaacgactcccagagttcaacgctctaaccagtgcacagagagaagattggcggcatggaattaatcagacaaagcagacaacactgccatgggcaagaataaaccattgggtgacaaacataatcatgtcttacggaaaaaagtgcttacttcacaaacaaaattgtcaggccctatgtcatgccttgtcagattcctttcacgcataagctttttttctactacaacctgatgtgcaacagaaaataagtcaaaacaaagcccactattaaggaagtacataaaattgaagtagtcaattgtccaccagtgcaaagttcaaagaaaacaaaactttgaactacagatgccaaattaaatttataaaaaatatgagtgaaataaaaaaagaattataaagggtacagaagcaacaaaagaaggtgcaatttgtaaagtaaaaaaagttgaccgtgtattcggtgaatgagcaattgctaattctaaaggtaaagaaattaatagagtgattccaaacataattatgaaagttctgctaaaattacagaagtgcttttattaacattgcataaatacccttgttgaaagctatctttcaatggctgcacatgacaactacactgcaattactgatttctacatgtccatcccataagttgaatggcagaatgtgctaccaagatacatcagctaataaactctaccatctatagttttatgtttcataagatgaactccagcagatcgcgaaccgattgctaaatgcagacctgtgtagcaatgccagcatggtccactccagggacccatagagcattataacctgacatcctccgccatcgtatcatcgcatcctgcattgctcaaaatcattatctagtaaatacagttaaaatgtcatagacatttctacaagcattaaaaaatactacctctatagccactgtaagagcatggcctatgtgaagagctccagtcacatttggaggtggcataacctgaaaagaaataacttaactctttgctggaagctaatcagcatttgtgtgaacaatttgacaatataaaacggtgatttcatattatgcagtttgctaaataagcttgtagcatatcttgcacaatcttcatgagcatgaaacacttactataacaaatggtggctttgtgcttgcagaatctgccctaaaatatcctgatgattcccaccaggcataccatctgcatcatgaaaatacaaacaaaggaagacatgcagttcagcacaaatttccaatgccataaaaccaataaatttaaactaccaatttggcatcatacgatttctcaaccgtgcttgggcaatactgattggccatttgaggtgcaagcagtttcttctgcccattaggagtgtcttgatcaataaaatcttcaggattttcatcctccacagcttttcccctatgtttcttctcaaccttcttgagtacatctaaagctggctgtgcctacagaaaccaaagcagtgtgacgaaataagtaaagtcatctccagcaaccatttcgtttcatacaaatctggatcaactgtacattcgcatacaaattaaagaattatatttgaacctgaagcatagctgcctccttttgttttgctttaagtcttttctcttctttctctttagcctgcaagcataacacttaaccccatatggctattcatgcacacagtattaacaaacaaattaataattcaacaaatttaaaacaactgttcagtaagatttcaattacccattaaggcattaggttacagattagccactcaggccaaaacaaaaaaaaaacaatgttttgagagcaaaccctagatggaaatttaattgataccttctgatttttcctcagtttccgttctaacgttttctcatcaagttgctgcatgcatccacaaagaagagaagtgaatagaatgggctgtggagttaaaactctaaaacaaaacacagttagtttgtaccatgcatcaagtacctccttgaaattttctctctctcgctctctttttttttggtgtgtgtatctgtgtgctggggtgggggaagcctcaggctaccaaatgtatttcctatgtctatgctctctctctctctcttggtgtgtgtaagagtgtatctgtgtgctggggtgggggaagcctcacactaccaaatgtataaatgttcctatgtctatggccagtgcatttcactggtgctactaaaatatatgatgcttgatatgcatcgccaatgctctaaataaacggctgattcagttccatgaattcatggattcatgaaacacgaacgagacatagtaatcatggactagaggttgtagcacaagtgcaattcgattataaatgactatgcataagcttatcatcaaagcgaacatgaggtaaggtaaggttaggttagggactatacaaaccttctccggagccttctccggaccatgcacctcgggctgctgcagaagaacacatccaaattagtatcactaaagcagagagagatagagaagaattccccacaaacagaagcataggatcagactgcctgatccatgttaacctaccttttccatgcttaagggcctgtttgtttgggctaaagcttctccaaaagccgcttcttgcttttggtatgtaagtctgtaaaagttgtgtctgtttcgcagccctgctttgcgccaattgatgtgtgcaatgtctgtaatgcccctggctgtttggagtgaacctatttgtttctgtaaaatgttttaatagtttttaatacctggaggggaattgacatataaggtgcatgcacatttaactaacattgttttttcccacaacgagcacacccaaatttcattaccaggaaagcaatgatattgcaatgtttgtcgcacaacagcattctcgacgagtttaacaacctacagcatttaaccttgattgcaacagagcgcatagggctcaattacagccagggccaagaaacctaaactgctcaaacctctcagtaaaaagcctctcttgacaccaacatctaaaaatttaactagcattgttggaacttgtagttgatcatccatagattacatttttttcAaaaaaaaaatgtgaatgtggtgtgatcactcccttgattgcaaaaagtacatcaagactactgtcatggtcataaatatcagcattggagagtatgtcactactgctactacaagtatcaaaaaaggtaatttacctatacagcacgcggtattactaacaagcatagtaggcatagcttcatctggccatcacaatcagtaaaatgtggagaatcagttcgtgaaagcacacgaattgtctcagacaggcatgaggtacttgcagatcaaattggagatacgaggaacaagcatgcatgaggaaaatattcacataaactccagcgtgcttctcttattttgggtacccagtaattgttcatatggtcatatcaaattggagacttgcatatcaaaaaaacaaggccatccagttcatctgttcatgtactcacattcgataagtggatctggtacagggacacccaatgtatgtcgcggtactctggctgtgtgctcggagccggaggggggcctcggattcgtccgcctggggagaggagctccggggtcgcctgccgcggagagagactcggcgagttggctgttcgctccgccaacggccaccgcggccgtcgactagagacgacggcgagagcggccagacaaagggccgcgagttagggttcttttgttttttttctctcacgaaagggatt
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| CDS seq | atggaaaagcagcccgaggtgcatggtccggagaaggctccggagaagcaacttgatgagaaaacgttagaacggaaactgaggaaaaatcagaaggctaaagagaaagaagagaaaagacttaaagcaaaacaaaaggaggcagctatgcttcaggcacagccagctttagatgtactcaagaaggttgagaagaaacataggggaaaagctgtggaggatgaaaatcctgaagattttattgatcaagacactcctaatgggcagaagaaactgcttgcacctcaaatggccaatcagtattgcccaagcacggttatgccacctccaaatgtgactggagctcttcacataggccatgctcttacagtggctatagaggatgcgatgatacgatggcggaggatgtcaggttataatgctctatgggtccctggagtggaccatgctggcattgctacacaggttgtagtagaaaaaaagcttatgcgtgaaaggaatctgacaaggcatgacatagggcctgacaattttgtttgtgaagttctcaaatggaaagagcggtatggtggtactatattgaatcaattgcaccgccttggggcctcacttgattggtctcgtgaggcttttacaatggatgagcaaaggtcaaatgctgtaactgaagcttttgtaaggttacacaaggaaggcctgatatatagagataaccgccttgtgaattgggactgcacacttctgacttcaatttctgagatagaggttgatcatattgatcttaaagaagaaacaatgttaaagatccctggttatgctactcctgtacaatttggtgtgttgatatcttttgcctatcctcttgaagaagggctaggtgagattgttgttgcaacaactcgaattgaaacaatgcttggtgatacagcaatagctgttcatcctgaggataaaaggtatatgcatctgcatggacggtatgcagtccaccccttcaatggccgaaaactcaaaataatctgtgatgctgagatagttgatcccagtttcggtactggggctgtcaagattgcacctgcacatgacccaaatgactttgaggttggaagacggaataaccttcagttcattaatatcttgacagatgatgggaaaataaacagcaatgggggtgcacaatttgaaggaatgccaagattcactgctcgaatttgcattattgaagcactgaaggcaaagggcttgtacaagggtgcaaagaataccgaaacgagtttgggcatttgttcaagaactaacgacatagtggagcctatgataaaatccccgcagtggtttgttaattgtaacaccatggccaaggtagcccttgatgctgtaaggtctaagaggattgagatcattcccccgcagtacgaacaagactggtatagatggcttgaaaatatacgtgattggtgtgtttcaaggcaacattggtggggacaccgtgtacctgcatggtatgtgacactagaagatgaccaggagaaaactctaggttctgacaatgaccgctggatagtcgccaaaagtgaaagtgctgcaagcgttgaggcacagaaaagttatccaggaaagaaattcatcctaaatcaggatcctgatgtgctagacacatggttttcatctgctctcttccccttagcagtacttggttggccagatgatactgctgacctccgttctttctaccctacttcagttctagaaactggacttgatattctcttctgttgggtagcacggatggtgatgatgggaacacaacttggtggtgatgtgccgtttcagaaggtttatttgcatcctattgtatgcgacacacatggccgaaaaatgtgcaagtcacttggtaatgtcattgatcctcttgaggtgataaatggcatgacactcgagggtcttgtaaaacgtctggaagaaggtaatctggatccagatgaattaaaccttgaacggaagctgacagattatcctgatggaattgctgaatgtggtactgatgccctccgctttgcactgatttcttacacttctcagtctgacaggataaatcttgatatcaagagagtggttggataccgacaatggtgcaataaattgtggaatgccatccgttttgccatgggcaagcttggtgttcactacagtccacctgcaactgtcgacgtgtctatcatgccaccaatctgcaagtggatactctcagcactaaacaaggctaccggcaaaactgttacctctttagaagcatacaaattctctgatgcaacatctgctatatactcttggtggcaataccagctatgtgatgtatttatagaagctataaaaccttacttcttcaacgaacctcaagagtttgaatctgcaagagtcgcctccagagatactctatgggtttgcctggagactggtttgcgcttgctccacccattcatgccttacataacagaagagctatggcagcatcttccacaacccaaatattcttacgtcctgcttttgcactctgccgaagccaagatttacaatgttcttgaaaatcaagctaaggtgaagggaattattcagatcctgacagagaatgacgaaactccagctgattgtgcaatcgctgttgttaacaaagatttgtcggtgtaccttaagcttcaaggagccataaatgcagaggctgagcgtgaaaagctaaggaagaagagagatggaatccaaaagctacaccatgctgtgacacacatgatggatgcttctggttatcgcgagaaggcacctcaaagtgtccaggaaggggatatgagaaagcacactgctttgttgcgggaactggagggcataagtgaagctgagaagaaactagatgccaaaaccgataatatttga
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| Protein seq | MEKQPEVHGPEKAPEKQLDEKTLERKLRKNQKAKEKEEKRLKAKQKEAAMLQAQPALDVLKKVEKKHRGKAVEDENPEDFIDQDTPNGQKKLLAPQMANQYCPSTVMPPPNVTGALHIGHALTVAIEDAMIRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMRERNLTRHDIGPDNFVCEVLKWKERYGGTILNQLHRLGASLDWSREAFTMDEQRSNAVTEAFVRLHKEGLIYRDNRLVNWDCTLLTSISEIEVDHIDLKEETMLKIPGYATPVQFGVLISFAYPLEEGLGEIVVATTRIETMLGDTAIAVHPEDKRYMHLHGRYAVHPFNGRKLKIICDAEIVDPSFGTGAVKIAPAHDPNDFEVGRRNNLQFINILTDDGKINSNGGAQFEGMPRFTARICIIEALKAKGLYKGAKNTETSLGICSRTNDIVEPMIKSPQWFVNCNTMAKVALDAVRSKRIEIIPPQYEQDWYRWLENIRDWCVSRQHWWGHRVPAWYVTLEDDQEKTLGSDNDRWIVAKSESAASVEAQKSYPGKKFILNQDPDVLDTWFSSALFPLAVLGWPDDTADLRSFYPTSVLETGLDILFCWVARMVMMGTQLGGDVPFQKVYLHPIVCDTHGRKMCKSLGNVIDPLEVINGMTLEGLVKRLEEGNLDPDELNLERKLTDYPDGIAECGTDALRFALISYTSQSDRINLDIKRVVGYRQWCNKLWNAIRFAMGKLGVHYSPPATVDVSIMPPICKWILSALNKATGKTVTSLEAYKFSDATSAIYSWWQYQLCDVFIEAIKPYFFNEPQEFESARVASRDTLWVCLETGLRLLHPFMPYITEELWQHLPQPKYSYVLLLHSAEAKIYNVLENQAKVKGIIQILTENDETPADCAIAVVNKDLSVYLKLQGAINAEAEREKLRKKRDGIQKLHHAVTHMMDASGYREKAPQSVQEGDMRKHTALLRELEGISEAEKKLDAKTDNI |
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| Function | Valine--tRNA ligase, mitochondrial 1 [UniProtKB/Swiss-Prot:P93736] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0016680 | OsKeNa_03g0016680.01 | Chr03 | 12720017 | 12730263 | - | NAM | ||
| CDS seq | atggaaaagcagcccgaggtgcatggtccggagaaggctccggagaagcaacttgatgagaaaacgttagaacggaaactgaggaaaaatcagaaggctaaagagaaagaagagaaaagacttaaagcaaaacaaaaggaggcagctatgcttcaggcacagccagctttagatgtactcaagaaggttgagaagaaacataggggaaaagctgtggaggatgaaaatcctgaagattttattgatcaagacactcctaatgggcagaagaaactgcttgcacctcaaatggccaatcagtattgcccaagcacggttatgccacctccaaatgtgactggagctcttcacataggccatgctcttacagtggctatagaggatgcgatgatacgatggcggaggatgtcaggttataatgctctatgggtccctggagtggaccatgctggcattgctacacaggttgtagtagaaaaaaagcttatgcgtgaaaggaatctgacaaggcatgacatagggcctgacaattttgtttgtgaagttctcaaatggaaagagcggtatggtggtactatattgaatcaattgcaccgccttggggcctcacttgattggtctcgtgagttgccagctaatttttcacatgttgcggatgatttgttccttttcagagataaccgccttgtgaattgggactgcacacttctgacttcaatttctgagatagaggttgatcatattgatcttaaagaagaaacaatgttaaagatccctggttatgctactcctgtacaatttggtgtgttgatatcttttgcctatcctcttgaagaagggctaggtgagattgttgttgcaacaactcgaattgaaacaatgcttggtgatacagcaatagctgttcatcctgaggataaaaggtatatgcatctgcatggacggtatgcagtccaccccttcaatggccgaaaactcaaaataatctgtgatgctgagatagttgatcccagtttcggtactggggctgtcaagattgcacctgcacatgacccaaatgactttgaggttggaagacggaataaccttcagttcattaatatcttgacagatgatgggaaaataaacagcaatgggggtgcacaatttgaaggaatgccaagattcactgctcgaatttgcattattgaagcactgaaggcaaagggcttgtacaagggtgcaaagaataccgaaacgagtttgggcatttgttcaagaactaacgacatagtggagcctatgataaaatccccgcagtggtttgttaattgtaacaccatggccaaggtagcccttgatgctgtaaggtctaagaggattgagatcattcccccgcagtacgaacaagactggtatagatggcttgaaaatatacgtgattggtgtgtttcaaggcaacattggtggggacaccgtgtacctgcatggtatgtgacactagaagatgaccaggagaaaactctaggttctgacaatgaccgctggatagtcgccaaaagtgaaagtgctgcaagcgttgaggcacagaaaagttatccaggaaagaaattcatcctaaatcaggatcctgatgtgctagacacatggttttcatctgctctcttccccttagcagtacttggttggccagatgatactgctgacctccgttctttctaccctacttcagttctagaaactggacttgatattctcttctgttgggtagcacggatggtgatgatgggaacacaacttggtggtgatgtgccgtttcagaaggtttatttgcatcctattgtatgcgacacacatggccgaaaaatgtgcaagtcacttggtaatgtcattgatcctcttgaggtgataaatggcatgacactcgagggtcttgtaaaacgtctggaagaaggtaatctggatccagatgaattaaaccttgaacggaagctgacagattatcctgatggaattgctgaatgtggtactgatgccctccgctttgcactgatttcttacacttctcagtctgacaggataaatcttgatatcaagagagtggttggataccgacaatggtgcaataaattgtggaatgccatccgttttgccatgggcaagcttggtgttcactacagtccacctgcaactgtcgacgtgtctatcatgccaccaatctgcaagtggatactctcagcactaaacaaggctaccggcaaaactgttacctctttagaagcatacaaattctctgatgcaacatctgctatatactcttggtggcaataccagctatgtgatgtatttatagaagctataaaaccttacttcttcaacgaacctcaagagtttgaatctgcaagagtcgcctccagagatactctatgggtttgcctggagactggtttgcgcttgctccacccattcatgccttacataacagaagagctatggcagcatcttccacaacccaaatattcttacgtcctgcttttgcactctgccgaagccaagatttacaatgttcttgaaaatcaagctaaggtgaagggaattattcagatcctgacagagaatgacgaaactccagctgattgtgcaatcgctgttgttaacaaagatttgtcggtgtaccttaagcttcaaggagccataaatgcagaggctgagcgtgaaaagctaaggaagaagagagatggaatccaaaagctacaccatgctgtgacacacatgatggatgcttctggttatcgcgagaaggcacctcaaagtgtccaggaaggggatatgagaaagcacactgctttgttgcgggaactggagggcataagtgaagctgagaagaaactagatgccaaaaccgataatatttga
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| Protein seq | MEKQPEVHGPEKAPEKQLDEKTLERKLRKNQKAKEKEEKRLKAKQKEAAMLQAQPALDVLKKVEKKHRGKAVEDENPEDFIDQDTPNGQKKLLAPQMANQYCPSTVMPPPNVTGALHIGHALTVAIEDAMIRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMRERNLTRHDIGPDNFVCEVLKWKERYGGTILNQLHRLGASLDWSRELPANFSHVADDLFLFRDNRLVNWDCTLLTSISEIEVDHIDLKEETMLKIPGYATPVQFGVLISFAYPLEEGLGEIVVATTRIETMLGDTAIAVHPEDKRYMHLHGRYAVHPFNGRKLKIICDAEIVDPSFGTGAVKIAPAHDPNDFEVGRRNNLQFINILTDDGKINSNGGAQFEGMPRFTARICIIEALKAKGLYKGAKNTETSLGICSRTNDIVEPMIKSPQWFVNCNTMAKVALDAVRSKRIEIIPPQYEQDWYRWLENIRDWCVSRQHWWGHRVPAWYVTLEDDQEKTLGSDNDRWIVAKSESAASVEAQKSYPGKKFILNQDPDVLDTWFSSALFPLAVLGWPDDTADLRSFYPTSVLETGLDILFCWVARMVMMGTQLGGDVPFQKVYLHPIVCDTHGRKMCKSLGNVIDPLEVINGMTLEGLVKRLEEGNLDPDELNLERKLTDYPDGIAECGTDALRFALISYTSQSDRINLDIKRVVGYRQWCNKLWNAIRFAMGKLGVHYSPPATVDVSIMPPICKWILSALNKATGKTVTSLEAYKFSDATSAIYSWWQYQLCDVFIEAIKPYFFNEPQEFESARVASRDTLWVCLETGLRLLHPFMPYITEELWQHLPQPKYSYVLLLHSAEAKIYNVLENQAKVKGIIQILTENDETPADCAIAVVNKDLSVYLKLQGAINAEAEREKLRKKRDGIQKLHHAVTHMMDASGYREKAPQSVQEGDMRKHTALLRELEGISEAEKKLDAKTDNI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0016680 | OsKeNa_03g0016680.02 | Chr03 | 12720148 | 12730263 | - | NAM | ||
| CDS seq | atggaaaagcagcccgaggtgcatggtccggagaaggctccggagaagcaacttgatgagaaaacgttagaacggaaactgaggaaaaatcagaaggctaaagagaaagaagagaaaagacttaaagcaaaacaaaaggaggcagctatgcttcaggcacagccagctttagatgtactcaagaaggttgagaagaaacataggggaaaagctgtggaggatgaaaatcctgaagattttattgatcaagacactcctaatgggcagaagaaactgcttgcacctcaaatggccaatcagtattgcccaagcacggttatgccacctccaaatgtgactggagctcttcacataggccatgctcttacagtggctatagaggatgcgatgatacgatggcggaggatgtcaggttataatgctctatgggtccctggagtggaccatgctggcattgctacacaggttgtagtagaaaaaaagcttatgcgtgaaaggaatctgacaaggcatgacatagggcctgacaattttgtttgtgaagttctcaaatggaaagagcggtatggtggtactatattgaatcaattgcaccgccttggggcctcacttgattggtctcgtgaggcttttacaatggatgagcaaaggtcaaatgctgtaactgaagcttttgtaaggttacacaaggaaggcctgatatatagagataaccgccttgtgaattgggactgcacacttctgacttcaatttctgagatagaggttgatcatattgatcttaaagaagaaacaatgttaaagatccctggttatgctactcctgtacaatttggtgtgttgatatcttttgcctatcctcttgaagaagggctaggtgagattgttgttgcaacaactcgaattgaaacaatgcttggtgatacagcaatagctgttcatcctgaggataaaaggtatatgcatctgcatggacggtatgcagtccaccccttcaatggccgaaaactcaaaataatctgtgatgctgagatagttgatcccagtttcggtactggggctgtcaagattgcacctgcacatgacccaaatgactttgaggttggaagacggaataaccttcagttcattaatatcttgacagatgatgggaaaataaacagcaatgggggtgcacaatttgaaggaatgccaagattcactgctcgaatttgcattattgaagcactgaaggcaaagggcttgtacaagggtgcaaagaataccgaaacgagtttgggcatttgttcaagaactaacgacatagtggagcctatgataaaatccccgcagtggtttgttaattgtaacaccatggccaaggtagcccttgatgctgtaaggtctaagaggattgagatcattcccccgcagtacgaacaagactggtatagatggcttgaaaatatacgtgattggtgtgtttcaaggcaacattggtggggacaccgtgtacctgcatggtatgtgacactagaagatgaccaggagaaaactctaggttctgacaatgaccgctggatagtcgccaaaagtgaaagtgctgcaagcgttgaggcacagaaaagttatccaggaaagaaattcatcctaaatcaggatcctgatgtgctagacacatggttttcatctgctctcttccccttagcagtacttggttggccagatgatactgctgacctccgttctttctaccctacttcagttctagaaactggacttgatattctcttctgttgggtagcacggatggtgatgatgggaacacaacttggtggtgatgtgccgtttcagaaggtttatttgcatcctattgtatgcgacacacatggccgaaaaatgtgcaagtcacttggtaatgtcattgatcctcttgaggtgataaatggcatgacactcgagggtcttgtaaaacgtctggaagaaggtaatctggatccagatgaattaaaccttgaacggaagctgacagattatcctgatggaattgctgaatgtggtactgatgccctccgctttgcactgatttcttacacttctcagtctgacaggataaatcttgatatcaagagagtggttggataccgacaatggtgcaataaattgtggaatgccatccgttttgccatgggcaagcttggtgttcactacagtccacctgcaactgtcgacgtgtctatcatgccaccaatctgcaagtggatactctcagcactaaacaaggctaccggcaaaactgttacctctttagaagcatacaaattctctgatgcaacatctgctatatactcttggtggcaataccagctatgtgatgtatttatagaagctataaaaccttacttcttcaacgaacctcaagagtttgaatctgcaagagtcgcctccagagatactctatgggtttgcctggagactggtttgcgcttgctccacccattcatgccttacataacagaagagctatggcagcatcttccacaacccaaatattcttacgtcctgcttttgcactctgccgaagccaagatttacaatgttcttgaaaatcaagctaaggtgaagggaattattcagatcctgacagagaatgacgaaactccagctgattgtgcaatcgctgttgttaacaaagatttgtcggtgtaccttaagcttcaaggagccataaatgcagaggctgagcgtgaaaagctaaggaagaagagagatggaatccaaaagctacaccatgctgtgacacacatgatggatgcttctggttatcgcgagaaggcacctcaaagtgtccaggaaggggatatgagaaagcacactgctttgttgcgggaactggagggcataagtgaagctgagaagaaactagatgccaaaaccgataatatttga
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| Protein seq | MEKQPEVHGPEKAPEKQLDEKTLERKLRKNQKAKEKEEKRLKAKQKEAAMLQAQPALDVLKKVEKKHRGKAVEDENPEDFIDQDTPNGQKKLLAPQMANQYCPSTVMPPPNVTGALHIGHALTVAIEDAMIRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMRERNLTRHDIGPDNFVCEVLKWKERYGGTILNQLHRLGASLDWSREAFTMDEQRSNAVTEAFVRLHKEGLIYRDNRLVNWDCTLLTSISEIEVDHIDLKEETMLKIPGYATPVQFGVLISFAYPLEEGLGEIVVATTRIETMLGDTAIAVHPEDKRYMHLHGRYAVHPFNGRKLKIICDAEIVDPSFGTGAVKIAPAHDPNDFEVGRRNNLQFINILTDDGKINSNGGAQFEGMPRFTARICIIEALKAKGLYKGAKNTETSLGICSRTNDIVEPMIKSPQWFVNCNTMAKVALDAVRSKRIEIIPPQYEQDWYRWLENIRDWCVSRQHWWGHRVPAWYVTLEDDQEKTLGSDNDRWIVAKSESAASVEAQKSYPGKKFILNQDPDVLDTWFSSALFPLAVLGWPDDTADLRSFYPTSVLETGLDILFCWVARMVMMGTQLGGDVPFQKVYLHPIVCDTHGRKMCKSLGNVIDPLEVINGMTLEGLVKRLEEGNLDPDELNLERKLTDYPDGIAECGTDALRFALISYTSQSDRINLDIKRVVGYRQWCNKLWNAIRFAMGKLGVHYSPPATVDVSIMPPICKWILSALNKATGKTVTSLEAYKFSDATSAIYSWWQYQLCDVFIEAIKPYFFNEPQEFESARVASRDTLWVCLETGLRLLHPFMPYITEELWQHLPQPKYSYVLLLHSAEAKIYNVLENQAKVKGIIQILTENDETPADCAIAVVNKDLSVYLKLQGAINAEAEREKLRKKRDGIQKLHHAVTHMMDASGYREKAPQSVQEGDMRKHTALLRELEGISEAEKKLDAKTDNI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0016680 | OsKeNa_03g0016680.03 | Chr03 | 12720148 | 12730263 | - | NAM | ||
| CDS seq | atggaaaagcagcccgaggtgcatggtccggagaaggctccggagaagcaacttgatgagaaaacgttagaacggaaactgaggaaaaatcagaaggctaaagagaaagaagagaaaagacttaaagcaaaacaaaaggaggcagctatgcttcaggcacagccagctttagatgtactcaagaaggttgagaagaaacataggggaaaagctgtggaggatgaaaatcctgaagattttattgatcaagacactcctaatgggcagaagaaactgcttgcacctcaaatggccaatcagtattgcccaagcacggttatgccacctccaaatgtgactggagctcttcacataggccatgctcttacagtggctatagaggatgcgatgatacgatggcggaggatgtcaggttataatgctctatgggtccctggagtggaccatgctggcattgctacacaggttgtagtagaaaaaaagcttatgcgtgaaaggaatctgacaaggcatgacatagggcctgacaattttgtttgtgaagttctcaaatggaaagagcggtatggtggtactatattgaatcaattgcaccgccttggggcctcacttgattggtctcgtgaggcttttacaatggatgagcaaaggtcaaatgctgtaactgaagcttttgtaaggttacacaaggaaggcctgatatatagagataaccgccttgtgaattgggactgcacacttctgacttcaatttctgagatagaggttgatcatattgatcttaaagaagaaacaatgttaaagatccctggttatgctactcctgtacaatttggtgtgttgatatcttttgcctatcctcttgaagaagggctaggtgagattgttgttgcaacaactcgaattgaaacaatgcttggtgatacagcaatagctgttcatcctgaggataaaaggtatatgcatctgcatggacggtatgcagtccaccccttcaatggccgaaaactcaaaataatctgtgatgctgagatagttgatcccagtttcggtactggggctgtcaagattgcacctgcacatgacccaaatgactttgaggttggaagacggaataaccttcagttcattaatatcttgacagatgatgggaaaataaacagcaatgggggtgcacaatttgaaggaatgccaagattcactgctcgaatttgcattattgaagcactgaaggcaaagggcttgtacaagggtgcaaagaataccgaaacgagtttgggcatttgttcaagaactaacgacatagtggagcctatgataaaatccccgcagtggtttgttaattgtaacaccatggccaaggtagcccttgatgctgtaaggtctaagaggattgagatcattcccccgcagtacgaacaagactggtatagatggcttgaaaatatacgtgattggtgtgtttcaaggcaacattggtggggacaccgtgtacctgcatggtatgtgacactagaagatgaccaggagaaaactctaggttctgacaatgaccgctggatagtcgccaaaagtgaaagtgctgcaagcgttgaggcacagaaaattctagaaactggacttgatattctcttctgttgggtagcacggatggtgatgatgggaacacaacttggtggtgatgtgccgtttcagaaggtttatttgcatcctattgtatgcgacacacatggccgaaaaatgtgcaagtcacttggtaatgtcattgatcctcttgaggtgataaatggcatgacactcgagggtcttgtaaaacgtctggaagaaggtaatctggatccagatgaattaaaccttgaacggaagctgacagattatcctgatggaattgctgaatgtggtactgatgccctccgctttgcactgatttcttacacttctcagtctgacaggataaatcttgatatcaagagagtggttggataccgacaatggtgcaataaattgtggaatgccatccgttttgccatgggcaagcttggtgttcactacagtccacctgcaactgtcgacgtgtctatcatgccaccaatctgcaagtggatactctcagcactaaacaaggctaccggcaaaactgttacctctttagaagcatacaaattctctgatgcaacatctgctatatactcttggtggcaataccagctatgtgatgtatttatagaagctataaaaccttacttcttcaacgaacctcaagagtttgaatctgcaagagtcgcctccagagatactctatgggtttgcctggagactggtttgcgcttgctccacccattcatgccttacataacagaagagctatggcagcatcttccacaacccaaatattcttacgtcctgcttttgcactctgccgaagccaagatttacaatgttcttgaaaatcaagctaaggtgaagggaattattcagatcctgacagagaatgacgaaactccagctgattgtgcaatcgctgttgttaacaaagatttgtcggtgtaccttaagcttcaaggagccataaatgcagaggctgagcgtgaaaagctaaggaagaagagagatggaatccaaaagctacaccatgctgtgacacacatgatggatgcttctggttatcgcgagaaggcacctcaaagtgtccaggaaggggatatgagaaagcacactgctttgttgcgggaactggagggcataagtgaagctgagaagaaactagatgccaaaaccgataatatttga
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| Protein seq | MEKQPEVHGPEKAPEKQLDEKTLERKLRKNQKAKEKEEKRLKAKQKEAAMLQAQPALDVLKKVEKKHRGKAVEDENPEDFIDQDTPNGQKKLLAPQMANQYCPSTVMPPPNVTGALHIGHALTVAIEDAMIRWRRMSGYNALWVPGVDHAGIATQVVVEKKLMRERNLTRHDIGPDNFVCEVLKWKERYGGTILNQLHRLGASLDWSREAFTMDEQRSNAVTEAFVRLHKEGLIYRDNRLVNWDCTLLTSISEIEVDHIDLKEETMLKIPGYATPVQFGVLISFAYPLEEGLGEIVVATTRIETMLGDTAIAVHPEDKRYMHLHGRYAVHPFNGRKLKIICDAEIVDPSFGTGAVKIAPAHDPNDFEVGRRNNLQFINILTDDGKINSNGGAQFEGMPRFTARICIIEALKAKGLYKGAKNTETSLGICSRTNDIVEPMIKSPQWFVNCNTMAKVALDAVRSKRIEIIPPQYEQDWYRWLENIRDWCVSRQHWWGHRVPAWYVTLEDDQEKTLGSDNDRWIVAKSESAASVEAQKILETGLDILFCWVARMVMMGTQLGGDVPFQKVYLHPIVCDTHGRKMCKSLGNVIDPLEVINGMTLEGLVKRLEEGNLDPDELNLERKLTDYPDGIAECGTDALRFALISYTSQSDRINLDIKRVVGYRQWCNKLWNAIRFAMGKLGVHYSPPATVDVSIMPPICKWILSALNKATGKTVTSLEAYKFSDATSAIYSWWQYQLCDVFIEAIKPYFFNEPQEFESARVASRDTLWVCLETGLRLLHPFMPYITEELWQHLPQPKYSYVLLLHSAEAKIYNVLENQAKVKGIIQILTENDETPADCAIAVVNKDLSVYLKLQGAINAEAEREKLRKKRDGIQKLHHAVTHMMDASGYREKAPQSVQEGDMRKHTALLRELEGISEAEKKLDAKTDNI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr03 | 12723304 | 12723706 | - | OsKeNa_03g0016680.01,OsKeNa_03g0016680.02 | OsKeNa_03g0016680.02,OsKeNa_03g0016680.01,OsKeNa_03g0016680.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.061709 | 1.856614 | 2.009157 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0335600 | RBH | 1.840314 | 1.568098 | 3.094725 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g21740 | RBH | 1.316455 | 1.055528 | 0.799720 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0335600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0016840 | RBH | 0.271537 | 8.571638 | 5.841219 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0016700 | RBH | 0.574478 | 5.307485 | 6.218838 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0016700 | RBH | 0.114565 | 0.360218 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0016470 | RBH | 1.357056 | 5.832976 | 8.577595 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0205200 | RBH | 3.498636 | 11.536343 | 5.374374 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0016340 | RBH | 0.092569 | 0.403351 | 0.840032 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0209800 | RBH | 3.999683 | 8.532666 | 16.363984 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0016570 | RBH | 0.145371 | 0.187197 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0016610 | RBH | 0.040156 | 1.360277 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0016640 | RBH | 1.727172 | 8.736513 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0016530 | RBH | 0.504385 | 0.767453 | 0.699149 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0016440 | RBH | 0.218170 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G016390 | RBH | 0.070660 | 1.710593 | 3.222271 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0016360 | RBH | 1.699631 | 20.235287 | 5.193242 |
