Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0014240 | OGI:03028180 | 14/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:10692097-10694127 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttatacatgtttacagcgggagacaactacacatacaaacagaagcgaaagacttgagttcgccatgtcggtcgagttgatcgatcctgccgcgtgcccatgcaccgactttggccatggcgacgatctctgtctccacgttctttgcaccagcggccgcacagccactgctcggcgtttgtgcgtgcatctcctcgaacacccgcagctgcgggccatctccaagaagccttcttgattgtcgctgtaacgcatgcgcgtcgtgcgcgacgccgcagcggtcattgtcggccttctcggcgacgggggacgacggcgtccagactccgggataccggtacgcctggggcagagcacgtcatcggcgacctgtggttgctctcccggtagatatgctgcacgccaacctcggcgaagcagccgagcaaggtgacgatctcgtcgtgcagggcggccgggatccgcgtctgtgtctccgcgccagtcgccacgcagcagctggacggtcgtcgccctcaaccaccagcctctccatgaaacaggcgagagcgagacgagacgtaggccgcggatgagcgcgccgcgcgggcctccaccacgtacgccgatgctccagtggtcggtcgtctcggcgaaggcgaccgacgcgggtccgcggatggcgccgccgatgctcgcactgcccgatccgtcgtggtacacggagccgtcgaaattgagcttgaagcagcctgcacgaggcggctcccagtcccaccgcaccaacaaattcgtggacctgaattgggtggcgcgggccaggccagccgcttgcccgcaaaacggcccacggagaaggttattacgcaggcagaataagttcaccggaggtccctcaacttaaagagcaagatttttttagtttcttaaccataaaatcagaaatgtatacccctaaactcacagaaaccgtgcactcaatatcctatggtagtatatatgggtggtttcgctgacgtggcatcctactcagaaaaaaataaaacaagtacatggggcccacatgtcagctgcacattcacgagcagccgggcaaatgcgggcgcggcggccagtggtggagtgggctcggcggcgcacggggaagaaacacgagagggggagagatgggcgcaggcgcggcaggcgagaatggcaggcggagcagcggtgggcggaggggcgacgggcaagtgcggcggagcggggcagaagcgggcaaactcggacgggcttgctggccgcctccccctccctcccaaaccgctctgctcggcacccgtcaactgcgacgacgacgaggaagatggtgacgaggccgccgccgtcatgctcggcatcgtccgccgcatcccataagcgttcgacagcgccgaccgcctcctttcccgccgctgccctcgcgccaaccgcctcctcttcttttctcccgccgcagccgtcgcgtcggctggccctctccccctctcccgccgcccccactccactgccggccacttctctccccgccgccatgcccactcgagagaatcgggagagaagagaagagaaaatgaaaaaaaaggagatatgtggggcccacaccattttctctcacttacatgtgggcctcacatatttattttaatttttttttgctgactaggatgccatgtcagcgaaacctggcagctatattatctcgggacctttttttagacggttttacatagtttagggatacacatttctgtttttatggttaaaggatctcaaaaatctcggtgttaagttgggggatctccggtgaacttatcccttccgcaggctggcctttttgggctaacggatccgcttggcccgtgaccgcgtgcgggcgccactaacccgcaaccgtagacacgacagggcggaggacggcggatcacgcacgccgcacgcgagcgcgagggcgatgcgccgatgcctcaccagtctccagtctccccaagccgtcccggtcgccgatggcgagagccatgggcaggttgacat
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| CDS seq | atgtcaacctgcccatggctctcgccatcggcgaccgggacggcttggggagactggagactggtgaggcatcggcgcatcgccctcgcgctcgcgtgcggcgtgcgtgatccgccgtcctccgccctgtcgtgtctacggtccacgaatttgttggtgcggtgggactgggagccgcctcgtgcaggctgcttcaagctcaatttcgacggctccgtgtaccacgacggatcgggcagtgcgagcatcggcggcgccatccgcggacccgcgtcggtcgccttcgccgagacgaccgaccactggagcatcggcgtacgtggtggaggcccgcgcggcgcgctcatccgcggcctacgtctcgtctcgctctcgcctgtttcatggagaggctggtggttgagggcgacgaccgtccagctgctgcgtggcgactggcgcggagacacagacgcggatcccggccgccctgcacgacgagatcgtcaccttgctcggctgcttcgccgaggttggcgtgcagcatatctaccgggagagcaaccacaggtcgccgatgacgtgctctgccccaggcgtaccggtatcccggagtctggacgccgtcgtcccccgtcgccgagaaggccgacaatgaccgctgcggcgtcgcgcacgacgcgcatgcgttacagcgacaatcaagaaggcttcttggagatggcccgcagctgcgggtgttcgaggagatgcacgcacaaacgccgagcagtggctgtgcggccgctggtgcaaagaacgtggagacagagatcgtcgccatggccaaagtcggtgcatgggcacgcggcaggatcgatcaactcgaccgacatggcgaactcaagtctttcgcttctgtttgtatgtgtagttgtctcccgctgtaaacatgtataa
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| Protein seq | MSTCPWLSPSATGTAWGDWRLVRHRRIALALACGVRDPPSSALSCLRSTNLLVRWDWEPPRAGCFKLNFDGSVYHDGSGSASIGGAIRGPASVAFAETTDHWSIGVRGGGPRGALIRGLRLVSLSPVSWRGWWLRATTVQLLRGDWRGDTDADPGRPARRDRHLARLLRRGWRAAYLPGEQPQVADDVLCPRRTGIPESGRRRPPSPRRPTMTAAASRTTRMRYSDNQEGFLEMARSCGCSRRCTHKRRAVAVRPLVQRTWRQRSSPWPKSVHGHAAGSINSTDMANSSLSLLFVCVVVSRCKHV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0014240 | OsKeNa_03g0014240.01 | Chr03 | 10692097 | 10694127 | - | NAM | ||
| CDS seq | atgtcaacctgcccatggctctcgccatcggcgaccgggacggcttggggagactggagactggtgaggcatcggcgcatcgccctcgcgctcgcgtgcggcgtgcgtgatccgccgtcctccgccctgtcgtgtctacggtccacgaatttgttggtgcggtgggactgggagccgcctcgtgcaggctgcttcaagctcaatttcgacggctccgtgtaccacgacggatcgggcagtgcgagcatcggcggcgccatccgcggacccgcgtcggtcgccttcgccgagacgaccgaccactggagcatcggcgtacgtggtggaggcccgcgcggcgcgctcatccgcggcctacgtctcgtctcgctctcgcctgtttcatggagaggctggtggttgagggcgacgaccgtccagctgctgcgtggcgactggcgcggagacacagacgcggatcccggccgccctgcacgacgagatcgtcaccttgctcggctgcttcgccgaggttggcgtgcagcatatctaccgggagagcaaccacaggtcgccgatgacgtgctctgccccaggcgtaccggtatcccggagtctggacgccgtcgtcccccgtcgccgagaaggccgacaatgaccgctgcggcgtcgcgcacgacgcgcatgcgttacagcgacaatcaagaaggcttcttggagatggcccgcagctgcgggtgttcgaggagatgcacgcacaaacgccgagcagtggctgtgcggccgctggtgcaaagaacgtggagacagagatcgtcgccatggccaaagtcggtgcatgggcacgcggcaggatcgatcaactcgaccgacatggcgaactcaagtctttcgcttctgtttgtatgtgtagttgtctcccgctgtaaacatgtataa
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| Protein seq | MSTCPWLSPSATGTAWGDWRLVRHRRIALALACGVRDPPSSALSCLRSTNLLVRWDWEPPRAGCFKLNFDGSVYHDGSGSASIGGAIRGPASVAFAETTDHWSIGVRGGGPRGALIRGLRLVSLSPVSWRGWWLRATTVQLLRGDWRGDTDADPGRPARRDRHLARLLRRGWRAAYLPGEQPQVADDVLCPRRTGIPESGRRRPPSPRRPTMTAAASRTTRMRYSDNQEGFLEMARSCGCSRRCTHKRRAVAVRPLVQRTWRQRSSPWPKSVHGHAAGSINSTDMANSSLSLLFVCVVVSRCKHV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g18670 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0014430 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0014270 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0014250 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0176900 | RBH | 0 | 0.0429215 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0013940 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0178700 | RBH | 0.016404 | 0.0476315 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0014190 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0014170 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0014250 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0014080 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G013990 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0013900 | RBH | 0.0 | 0.0 | 0.0 |
