Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0011250 | OGI:03022240 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:8442353-8447868 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gatcaaatcaagatgctttcaaattccaattcagaaaatagagatgtgtacaggggaagggggaatggagcatactgcatacacaccatcaagctagacaaactgacagaacctaacagacacgcatgaaacttataggaagctagctaaactctaccggtagctgcacatcgatccaacattttcgtcatcatcattggcaaacacgcatagacccacttctttattgtaaccaactgactagcttcatcgcgttctttatctgcatattttttattcttcagtaactcaaaagtttggtccagcagcgaggatcttgtctgtcaggctgctgtctcccccgatcttgtagttggcgaacacctcgaagttcttcttgaacaggccagccagcttcaggagcgtctccttgtacgcgcccttgtccgtccactgcacagaggccacatttccgacgaagaacaactcagactctgcattttttacatgtatagcagaaatggcatgaactgatgcgtgatgctacggagcttacggtgttgatcgggtcgaggatttcagacgggacgccgtcgatttcagtggggatctccaggccaaacacctccgtcttcttgtagttggcggtgaggagctcaccggagtggatggcgtcgatgatcttcctggtatacggcagcctgatccgcttgccaactccgtacctgaacagtgaattcagagttagttcatgccacaggtaaatgtgcaatggtgtggacgctgttacagtggacagtagcagataccttccaccggaccaaccggtgttgacgagccacccggtggcgccatacttctgcatcttctcggcgagcatggcggcgtacttggtcgggtggagcatgatgaacgctgcaccgaagcaagcagagaacgtagcctgcggctccttgatgccatcctccgtgccggcaacctgttgaaatggcaatgcaataacgaagattcaggctaaattcctttgttgatcatcaaggtgataggaaggtaaggcaggtgactctgcttctgaacaaaaattgtttaccagagcagtgtagccactgatgaagtggtacatggtctgtggaaggttcagcttgctgacaggagggaggacgccgaaagcgtcgcatgccaggagaatgacgttcttcgggtgtgggccgacgcacggtatcttggcgttggggatgtactcgatagggtaagcagcgcgcgtgttctctgcagaaaagttcagagttgtgagatttccaTtttttgttttttgctgtaacttttgtgactgactgaaaccggattgcgctttggagataacttaccagtgacagatttgtcggtgtaatcaacttcacgggtgtgctcatcaaagacgacattctccaacactgcagacgccaaacattttcgatcaatgaaatggcaagcgggagaaactagaatgatcgactaaattaaactgaaggttcaggcaactaccggtcccaaacttgatggcattccaaatatcaggctctttctcctgtgacaagtctatgcacttggcatagcaaccaccctcgatgttggacacgccagtgtcactccagcagtgctcatcgtcgccgatcagcagcctgttgtggtcagttgacagagtagtctttccagtacctgccgattaaaataacacatacacaaaatcagccaaaaagatgacagtaaacaacaagggcactaacaacacaaattcttcagtgaaacaggcatcatgcacacagcaacaaagatctcaaacagatatgatgtattcagttattatatatatggtgatcaaggggaacgcgtcagatgagactgggcaggtgacggcaccacgggtgttttttcatttcatccaccgtggagagccatcttattacctgacagtccaaagaagagggcgacgtcgccctgcttgcccatgttgcagccggagtgcagggagaggatgcccctcctgggcatgaggtagtgcatcaccccgaagagccccttcttcatctccccggcgtactgcgtgccgaggatcaccatctccctcctagcgaggttgatgtctacgctcgtcgacgacgtcatgtagtgcgtgtaccggttgcaggggaactgcccggcgttgtatatggtgaagtccggcgtgccgaactcctccagctcctcctccgtcggccggatgcacctgccaagcccatttcccccacatatccattccggttactactgcaattctactacttagtacgccgctgatgtgagatgatcccccatgtcttggtaggcatgcaataggattccagcacacacacacaacatatagtcacatatatctcataatcatggagcagtatacgtcaaggtgaacttatctggtggcgacacgaacgagcgacctaaagatagtgcaaagtgacggcttcacttacatgttgtgcatgaagagcgagtggtacgccctggccgagatgatacggactttgatccggttctccgtgtcccagttcaggaactggtcgttcacaaacacctacagaaatacagaacaaaatatagtttgttatcaactgctgatgtaaaaattactgacacggtcactgaacttgagagtcgtatatcaccttgtcaagggagttgaggtagtcgacggccctctccctgttggtgaggaaagtgtgctcgtccatctcgatgttgggcgaacccctgcagtaggagagacacaggcaaaacagagtgatcagtcagctgcaaatcagcaagcagagcctgcagaaacagagctttgacatgcataagtagagtaggcggtgaactcacttgccccaccaaagctcctgcgcggaggcctcatccttgacgatgcgcttgtccctcggcgaccggccggtcttggcgccggacagcgtcgccagcgcgccggtggacgtgatgaacgaccccttctcgtacttgatcgcctgctcgtacagctctgctcgcccacatcccaccagaaaacacgtcacttacacccatgtcacgagttataatccctgaacaaaaattacagccgttctggcgtcgcgtcgcgtaccagcaggcgagaggttgtagagcacatgggtgaacttgagggagctgtcgctgacggcgatggtcggggtgacgtgcgggtggtggtggtgcaccggctgcgggtgcggcgacggcgcgcccttcgccgcggcctcgcccttcctcgccggatctcccctgacgaccttcggcccggtctcacgcgtcagcgacgccaacgacgcgctgcatcagacgtcatcgtgacagggatcgttccatcagttaattaccactttatcaggtcaaaataataataataagaacatccaaagaaaatcagcacttgctcagttgcttgctaccactgctaaacttactcctaaataaaagtaagaccatgtctcaatgaactcattgtgtctagttagtccgaatagaatactgtgtcgagcggcttgtgtagaacgatacgaggtttcctctaatttcttgggggaaattcaggcgcaagttacgcgacggcaacagctaccgacaccgccgcgtcaggctgatgaggagattatcgggtatccccgcggcgcaagttgccgcctcaaattgcgcccgcgttcgttacgtctgagacaccgcatcggcggctggtgcgtgtcgtatcgtatcccccaacaagccctatcgcgatatcgtcgacgttgccgatcgacacaaacggcagcgtgcatgacggaagcatgtattgctctcccaaaaatacagctaaaatcaacgcctctgttgtctctaccgcccaatcgaattctgtcacgccaaggttcttcgctcgctccccagcatgactgcgaaatcgtattgggatttttgggggtttgcgtggattcggtgcgatgcgagggggaatgcgaacttgtgcggtgcgtgcaagcgggtggatgttctgggcaattttgtgatgcggtgcggtgcggtgcacgggggatgtcgcatgaaaggctgcggcctgcgggcagcgggcgtgcatggcacggtgcggacatcttgtgatgattgtcctttctgctggaaaacgacctgggattgtaatccggacctacttttttttttgtccaactttttgtgcgtattagccgattaacccacggtaatcctagtcccaacattacttcTttttttttataaacacattacttggcttggccccgtgagttacttttggtttatctttattcgtttcatttacgctctgaactctacgtgtctgttacgaatttaggttgctggatatggttgacacgcccgtcctccaatgtccacgtggcagaacaggtgcacaactaccattaccatggtccatcctttcgttctcttccatgtgggagtaaaattatccagcaacaacgtcattttaTtttttttttactttcgtcctatctaaaaggggattgttcgattcctcctcttcattttccatttccatttctcccggctaaaatttcccattttcatttgtcattcccttgttagttttcttaacaaatgcattggccagtggccatttccaattcagattgctcgttaggaagcaaaaggcaaagcctattattatacgagcgttctcaaaaagaaaaagagagagagagagagccgaggagtcacctgatggactggagctgctggcgctggcgctcctcctcggagagggcggcggcgaagggcgaggaggcgccgtccttgatgggcgtggtgggcgccgaccgcttccgctgcagcgagtggagctcgtcgatggtctgcgcccgcaccggcgccgagctgtcgtcgtggcatatcccgttctcgtgcttcttcgtcttcgccccgtgcgtctcgatccgcgccagcccgttcggcgtgctcgccatggccgtctccggtcgcgcgaaaccttcaaaaaaaaaaaaaaacggagttgctagaaatatggcgccatatgctatagtctattttttttcagccactttacacagtagttacacatcatttacaccccacttacatatgtaattagtatgtaatttttgaatttacatatataattttagtatttacatatgtaattttgagacttatattgtatatatattaaaattacatatgtaatttagggacttacaatgtaaatatatgacgactattttttgatgaaaaatatggcaccataaatatagctacacccAaaaaaaaaaagtaaacagtcacgttaattagcaacgccaacataacagcgctagttacgatttacgacccggttctgccattgatgcttgcagcatccaaatgccggtgcaaaaaccacggagaaattaaaagagatgatgaacacgtacgaggcagtcgaggaggagatcagcaacgcgatagtgtacaagatgacaggacaggagtggagaggcgtgggg
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| CDS seq | atggcgagcacgccgaacgggctggcgcggatcgagacgcacggggcgaagacgaagaagcacgagaacgggatatgccacgacgacagctcggcgccggtgcgggcgcagaccatcgacgagctccactcgctgcagcggaagcggtcggcgcccaccacgcccatcaaggacggcgcctcctcgcccttcgccgccgccctctccgaggaggagcgccagcgccagcagctccagtccatcagcgcgtcgttggcgtcgctgacgcgtgagaccgggccgaaggtcgtcaggggagatccggcgaggaagggcgaggccgcggcgaagggcgcgccgtcgccgcacccgcagccggtgcaccaccaccacccgcacgtcaccccgaccatcgccgtcagcgacagctccctcaagttcacccatgtgctctacaacctctcgcctgctgagctgtacgagcaggcgatcaagtacgagaaggggtcgttcatcacgtccaccggcgcgctggcgacgctgtccggcgccaagaccggccggtcgccgagggacaagcgcatcgtcaaggatgaggcctccgcgcaggagctttggtggggcaagggttcgcccaacatcgagatggacgagcacactttcctcaccaacagggagagggccgtcgactacctcaactcccttgacaaggtgtttgtgaacgaccagttcctgaactgggacacggagaaccggatcaaagtccgtatcatctcggccagggcgtaccactcgctcttcatgcacaacatgtgcatccggccgacggaggaggagctggaggagttcggcacgccggacttcaccatatacaacgccgggcagttcccctgcaaccggtacacgcactacatgacgtcgtcgacgagcgtagacatcaacctcgctaggagggagatggtgatcctcggcacgcagtacgccggggagatgaagaaggggctcttcggggtgatgcactacctcatgcccaggaggggcatcctctccctgcactccggctgcaacatgggcaagcagggcgacgtcgccctcttctttggactgtcaggtactggaaagactactctgtcaactgaccacaacaggctgctgatcggcgacgatgagcactgctggagtgacactggcgtgtccaacatcgagggtggttgctatgccaagtgcatagacttgtcacaggagaaagagcctgatatttggaatgccatcaagtttgggaccgtgttggagaatgtcgtctttgatgagcacacccgtgaagttgattacaccgacaaatctgtcactgagaacacgcgcgctgcttaccctatcgagtacatccccaacgccaagataccgtgcgtcggcccacacccgaagaacgtcattctcctggcatgcgacgctttcggcgtcctccctcctgtcagcaagctgaaccttccacagaccatgtaccacttcatcagtggctacactgctctggttgccggcacggaggatggcatcaaggagccgcaggctacgttctctgcttgcttcggtgcagcgttcatcatgctccacccgaccaagtacgccgccatgctcgccgagaagatgcagaagtatggcgccaccgggtggctcgtcaacaccggttggtccggtggaaggtacggagttggcaagcggatcaggctgccgtataccaggaagatcatcgacgccatccactccggtgagctcctcaccgccaactacaagaagacggaggtgtttggcctggagatccccactgaaatcgacggcgtcccgtctgaaatcctcgacccgatcaacacctggacggacaagggcgcgtacaaggagacgctcctgaagctggctggcctgttcaagaagaacttcgaggtgttcgccaactacaagatcgggggagacagcagcctgacagacaagatcctcgctgctggaccaaacttttga
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| Protein seq | MASTPNGLARIETHGAKTKKHENGICHDDSSAPVRAQTIDELHSLQRKRSAPTTPIKDGASSPFAAALSEEERQRQQLQSISASLASLTRETGPKVVRGDPARKGEAAAKGAPSPHPQPVHHHHPHVTPTIAVSDSSLKFTHVLYNLSPAELYEQAIKYEKGSFITSTGALATLSGAKTGRSPRDKRIVKDEASAQELWWGKGSPNIEMDEHTFLTNRERAVDYLNSLDKVFVNDQFLNWDTENRIKVRIISARAYHSLFMHNMCIRPTEEELEEFGTPDFTIYNAGQFPCNRYTHYMTSSTSVDINLARREMVILGTQYAGEMKKGLFGVMHYLMPRRGILSLHSGCNMGKQGDVALFFGLSGTGKTTLSTDHNRLLIGDDEHCWSDTGVSNIEGGCYAKCIDLSQEKEPDIWNAIKFGTVLENVVFDEHTREVDYTDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLPQTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMLHPTKYAAMLAEKMQKYGATGWLVNTGWSGGRYGVGKRIRLPYTRKIIDAIHSGELLTANYKKTEVFGLEIPTEIDGVPSEILDPINTWTDKGAYKETLLKLAGLFKKNFEVFANYKIGGDSSLTDKILAAGPNF |
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| Function | Phosphoenolpyruvate carboxykinase (ATP) [UniProtKB/Swiss-Prot:Q9SLZ0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0011250 | OsKeNa_03g0011250.01 | Chr03 | 8442608 | 8447341 | - | NAM | ||
| CDS seq | atggcgagcacgccgaacgggctggcgcggatcgagacgcacggggcgaagacgaagaagcacgagaacgggatatgccacgacgacagctcggcgccggtgcgggcgcagaccatcgacgagctccactcgctgcagcggaagcggtcggcgcccaccacgcccatcaaggacggcgcctcctcgcccttcgccgccgccctctccgaggaggagcgccagcgccagcagctccagtccatcagcgcgtcgttggcgtcgctgacgcgtgagaccgggccgaaggtcgtcaggggagatccggcgaggaagggcgaggccgcggcgaagggcgcgccgtcgccgcacccgcagccggtgcaccaccaccacccgcacgtcaccccgaccatcgccgtcagcgacagctccctcaagttcacccatgtgctctacaacctctcgcctgctgagctgtacgagcaggcgatcaagtacgagaaggggtcgttcatcacgtccaccggcgcgctggcgacgctgtccggcgccaagaccggccggtcgccgagggacaagcgcatcgtcaaggatgaggcctccgcgcaggagctttggtggggcaagggttcgcccaacatcgagatggacgagcacactttcctcaccaacagggagagggccgtcgactacctcaactcccttgacaaggtgtttgtgaacgaccagttcctgaactgggacacggagaaccggatcaaagtccgtatcatctcggccagggcgtaccactcgctcttcatgcacaacatgtgcatccggccgacggaggaggagctggaggagttcggcacgccggacttcaccatatacaacgccgggcagttcccctgcaaccggtacacgcactacatgacgtcgtcgacgagcgtagacatcaacctcgctaggagggagatggtgatcctcggcacgcagtacgccggggagatgaagaaggggctcttcggggtgatgcactacctcatgcccaggaggggcatcctctccctgcactccggctgcaacatgggcaagcagggcgacgtcgccctcttctttggactgtcaggtactggaaagactactctgtcaactgaccacaacaggctgctgatcggcgacgatgagcactgctggagtgacactggcgtgtccaacatcgagggtggttgctatgccaagtgcatagacttgtcacaggagaaagagcctgatatttggaatgccatcaagtttgggaccgtgttggagaatgtcgtctttgatgagcacacccgtgaagttgattacaccgacaaatctgtcactgagaacacgcgcgctgcttaccctatcgagtacatccccaacgccaagataccgtgcgtcggcccacacccgaagaacgtcattctcctggcatgcgacgctttcggcgtcctccctcctgtcagcaagctgaaccttccacagaccatgtaccacttcatcagtggctacactgctctggttgccggcacggaggatggcatcaaggagccgcaggctacgttctctgcttgcttcggtgcagcgttcatcatgctccacccgaccaagtacgccgccatgctcgccgagaagatgcagaagtatggcgccaccgggtggctcgtcaacaccggttggtccggtggaaggtacggagttggcaagcggatcaggctgccgtataccaggaagatcatcgacgccatccactccggtgagctcctcaccgccaactacaagaagacggaggtgtttggcctggagatccccactgaaatcgacggcgtcccgtctgaaatcctcgacccgatcaacacctggacggacaagggcgcgtacaaggagacgctcctgaagctggctggcctgttcaagaagaacttcgaggtgttcgccaactacaagatcgggggagacagcagcctgacagacaagatcctcgctgctggaccaaacttttga
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| Protein seq | MASTPNGLARIETHGAKTKKHENGICHDDSSAPVRAQTIDELHSLQRKRSAPTTPIKDGASSPFAAALSEEERQRQQLQSISASLASLTRETGPKVVRGDPARKGEAAAKGAPSPHPQPVHHHHPHVTPTIAVSDSSLKFTHVLYNLSPAELYEQAIKYEKGSFITSTGALATLSGAKTGRSPRDKRIVKDEASAQELWWGKGSPNIEMDEHTFLTNRERAVDYLNSLDKVFVNDQFLNWDTENRIKVRIISARAYHSLFMHNMCIRPTEEELEEFGTPDFTIYNAGQFPCNRYTHYMTSSTSVDINLARREMVILGTQYAGEMKKGLFGVMHYLMPRRGILSLHSGCNMGKQGDVALFFGLSGTGKTTLSTDHNRLLIGDDEHCWSDTGVSNIEGGCYAKCIDLSQEKEPDIWNAIKFGTVLENVVFDEHTREVDYTDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLPQTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMLHPTKYAAMLAEKMQKYGATGWLVNTGWSGGRYGVGKRIRLPYTRKIIDAIHSGELLTANYKKTEVFGLEIPTEIDGVPSEILDPINTWTDKGAYKETLLKLAGLFKKNFEVFANYKIGGDSSLTDKILAAGPNF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0011250 | OsKeNa_03g0011250.02 | Chr03 | 8442353 | 8447868 | - | IsoSeq | ||
| CDS seq | cccacgcctctccactcctgtcctgtcatcttgtacactatcgcgttgctgatctcctcctcgactgcctcgtttcgcgcgaccggagacggccatggcgagcacgccgaacgggctggcgcggatcgagacgcacggggcgaagacgaagaagcacgagaacgggatatgccacgacgacagctcggcgccggtgcgggcgcagaccatcgacgagctccactcgctgcagcggaagcggtcggcgcccaccacgcccatcaaggacggcgcctcctcgcccttcgccgccgccctctccgaggaggagcgccagcgccagcagctccagtccatcagcgcgtcgttggcgtcgctgac
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| Protein seq | PTPLHSCPVILYTIALLISSSTASFRATGDGHGEHAERAGADRDARGEDEEARERDMPRRQLGAGAGADHRRAPLAAAEAVGAHHAHQGRRLLALRRRPLRGGAPAPAAPVHQRVVGVAD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.078611 | 0.905606 | 1.206859 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0255500 | RBH | 23.580669 | 21.543602 | 8.718275 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g15050 | RBH | 14.336161 | 12.906699 | 1.286095 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0255500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0011410 | RBH | 3.535813 | 55.177505 | 5.078080 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0005590 | RBH | 0.000000 | 4.977574 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0011270 | RBH | 5.985492 | 19.244759 | 3.668776 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0011230 | RBH | 1.556260 | 1.348495 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0011100 | RBH | 6.076611 | 17.435699 | 27.569471 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0139300 | RBH | 9.914261 | 33.1798495 | 1.7077155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0010990 | RBH | 3.774767 | 0.874788 | 1.126757 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0139800 | RBH | 8.142192 | 239.838593 | 1.072988 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0011140 | RBH | 0.253357 | 1.075767 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0011220 | RBH | 0.838668 | 22.939423 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0011190 | RBH | 15.100351 | 38.386356 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0011170 | RBH | 2.954609 | 2.494543 | 1.911879 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0011100 | RBH | 2.561881 | 19.166506 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G011090 | RBH | 2.152106 | 3.854500 | 1.520168 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0010960 | RBH | 10.948016 | 87.683693 | 5.756063 |
