Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0011140 | OGI:03022030 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:8349818-8353587 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aacatatcagatattcaagtttgcttgtttgtagcataggatatagtttgagcaaaacaaagaaagaagtgcaatgttcagcggttgagttttccttttggcaacgaaacacaagatgttcaaaagaaaccgtcccaaatttaaaggaaaatgaaaaataatccaaattaacagtcaccaaatttcccccgacgttccttccctaacagatcagcacgtctccaaaacttcaacctctgcatcggaaaatcggatgcacgcacgcgcggcacggcgcggcgagattgcagcgacgacgacgttgttttgttcagatcagcacgggcgcgaagtaggacttgacgtcgtcgctcgcccactgcagcgcgccccaccagtgcttgtcgcactccaccctcaccttgcactgcccgctcgccgccggccgcatcgggatgcgcctcagccgcgggcaacccctcgtctgcacgcgccggagctccgggaacgcgcactccccgccgtcgccgcggatggcctccagcttgggcagacccagcagcgccagcagacgcagccgcgggaacgtcaccagctcacccgccgcgctgccaccgttcgcggcgccgcccagcagcgtcgtcatgccgttgcacccgctgaggttgagcgactccaggtgcgggaggtgctgcacccacgtcaggtgcgccacggcgtggcacgcgccgatggccacctcccggaggttggacgccgccccgtgggaccacgccacggtgcggagcttcgtcaggaacccgaacttgatcacctccagcctcggcgcgcgtgcgtcggcgacgatctcctcgacgtcgcaggagtagatggtcatctccctgatgctctcctgcacgccgccgaactccgccgcgtgctgcgcggacagcagcggcagggaccgcgtgccgtcctgcagcttgcggaggtggagcgaccgggcgcgcacgccaggtgccagcctcgcgagcctcgccacgtccctggtgctgtccagccacaggcccagcgccgtcagctgcgcgccgctgctctcaagatcatcaattaccggcgcgatgtagtcgtccgcgatggagacgatgctcgcggtgaacagttcgagcacctgcagcttcccgagccgtgagatcagcccggccggtatggtgatctggatgtagtagttgtcgcgcaggtagaggtacttgagctggctcaggttgctcagctccatcggcagcgacaggatcctgttcttggagaggttgaggtactccaggttgaccaagcagcagatctccatcgggaacgcgtcgacgatgccggtctcctccatgtcaaggtaggtcagccttgtgaagtgctggatcgcctggatcatcctcttcggcagggcacggttgcactggagcatcagcgtctccggctgcgcgtccgcgagggcgccccccgtcttcgccggcacgtcctcgatgccgttgtgcatcagggacacccgccgcgcgtcgcgccacagcgcctcctcccgcggcggctccctcagcccggcgccggcgcggaccagccacttgccaggcgcgaaccggagcgccgcgtcgcggacgacgtcgtggagcctgacgtgcgtgtcggacgggaacatgttgtaccggtggttgtccccgcgctccaccagccgcgacgcctccagcacggagatcaccgagtgcgcgagccggtgcgcctcgtcgacgtcggcgagctccgggagcaggccgagccctgtccagcactggacgagctcgtccttggagatgttgtgatcctccggccagagcgcgcaggccaggaagcactccctcgtcatgtcgttctccagattgtcgtagcagaatttcactagagggtgagcgatcttgtccgggccgggcgcgctcgagagcttcgtcttcttcagggcgtcgagcgcgtcgccccactccttcggtgtgcgcttgctcgacatggcgcggccgacggtgacgagggacaaaggcaagcccttgcactctgaagcaacctgtttagttgtagaacgaatttattagcagttgtgaatgatggaacagatcaaatgtaaatgaaatacatcaactagacttgatggcacataagtacataacacgttgataagtcgtgcaacaagccagtgcaaaaggattgaagaaacagaaagattatcatggaaaatagagaaacagaattgttcgattgcctttgtgtaaaacggaacacattttaaaatcttctgcaagaccattctgcaaagggtagtattgtaccataaccattgggtgataataatctgatagcattcaatttgtgatttgcaatttggtagtagctggaaagaacaggaaatcacagagatgatcctgatttaaaaaggtagctaatgtttatcggaaaatccatttataaaaaaatatacaaggaaattcagttagcggagacatgagaatttgaccatctcatttctcaatcgaaataaatccttacagttagcatcaaacctagactgaaacttaagcatgtaccattgtatgatctaacggatggaagatatctattttttgaaggaaaactgaaaatgctaaacgtagcgcttgttttgaaccaatctgatttcaaacaaagacagatcaagtgattacctgtcttgaaagtgcaggaatccgagggtggcgatggatcgtctcctcgcgagcgttggcctcgaacaggttccacgcatcctcctcgctcaagcactccatcttgatcttcttgcggcatcccatgtcggcgcacaccgcctcgctcctcgacgccaccaccaccttcctcacccggccggccaccatgccgagcggctgcgggatgccgaccctctccaggtcaagtcgctcccacacgccgtcgaggagcagcaggaagctcttgtccctgaggaagctcaggatgccagcggcctgcgcctgctccgtcggcgcgtcgcggaggccgagcacgcccacgacctccctctgcagcttcgccaccgtgcagtccctggaggccgccacgagcaggacgtggtcgaacggcgcgacgaggccgcacgcgtcgcggacgtgcgtgagcaccgtggtcttgcccacgccccccgcgccccagacgccgagcgcggcgtcgcagtcgccgaggaagcggagcgcctcgttgaggtagggcctcgtgagactggtccccggcgggagctccagctcctccggctggcggagcagcggcggcggcgcctgcggcgtggacagcgcggcctcgagcagcgcctcgccctgctcacggagcgcgcggacggccttgagctgcttctcggccgacccggcgacgggtgccgtggagacgaagtactgcacgaggcggagcacgtagagctggccaccatcgtgccgcgccttgagcgacgcgacctcgtcctgcgcctcctgcacgcgccgcagccacgcgcgcgccagctggtccgactccggcggcgcgggctccaccttgagcagctcggaccgcagctgcagcagcgcctccacggcgtcggcgagctccttgacgcgcctgtcggcgtcggccagcggctgccaccacttgccgaagacgagcacgagcagcgcgccgccgagggcgagcgaggcgaggacggcggcgagctgcatctccatggcgcgcacaacttgcgcggggggaacccacggagaggagcgataggcgtggacggaagagtgggcggcgcttcc
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| CDS seq | atggagatgcagctcgccgccgtcctcgcctcgctcgccctcggcggcgcgctgctcgtgctcgtcttcggcaagtggtggcagccgctggccgacgccgacaggcgcgtcaaggagctcgccgacgccgtggaggcgctgctgcagctgcggtccgagctgctcaaggtggagcccgcgccgccggagtcggaccagctggcgcgcgcgtggctgcggcgcgtgcaggaggcgcaggacgaggtcgcgtcgctcaaggcgcggcacgatggtggccagctctacgtgctccgcctcgtgcagtacttcgtctccacggcacccgtcgccgggtcggccgagaagcagctcaaggccgtccgcgcgctccgtgagcagggcgaggcgctgctcgaggccgcgctgtccacgccgcaggcgccgccgccgctgctccgccagccggaggagctggagctcccgccggggaccagtctcacgaggccctacctcaacgaggcgctccgcttcctcggcgactgcgacgccgcgctcggcgtctggggcgcggggggcgtgggcaagaccacggtgctcacgcacgtccgcgacgcgtgcggcctcgtcgcgccgttcgaccacgtcctgctcgtggcggcctccagggactgcacggtggcgaagctgcagagggaggtcgtgggcgtgctcggcctccgcgacgcgccgacggagcaggcgcaggccgctggcatcctgagcttcctcagggacaagagcttcctgctgctcctcgacggcgtgtgggagcgacttgacctggagagggtcggcatcccgcagccgctcggcatggtggccggccgggtgaggaaggtggtggtggcgtcgaggagcgaggcggtgtgcgccgacatgggatgccgcaagaagatcaagatggagtgcttgagcgaggaggatgcgtggaacctgttcgaggccaacgctcgcgaggagacgatccatcgccaccctcggattcctgcactttcaagacaggttgcttcagagtgcaagggcttgcctttgtccctcgtcaccgtcggccgcgccatgtcgagcaagcgcacaccgaaggagtggggcgacgcgctcgacgccctgaagaagacgaagctctcgagcgcgcccggcccggacaagatcgctcaccctctagtgaaattctgctacgacaatctggagaacgacatgacgagggagtgcttcctggcctgcgcgctctggccggaggatcacaacatctccaaggacgagctcgtccagtgctggacagggctcggcctgctcccggagctcgccgacgtcgacgaggcgcaccggctcgcgcactcggtgatctccgtgctggaggcgtcgcggctggtggagcgcggggacaaccaccggtacaacatgttcccgtccgacacgcacgtcaggctccacgacgtcgtccgcgacgcggcgctccggttcgcgcctggcaagtggctggtccgcgccggcgccgggctgagggagccgccgcgggaggaggcgctgtggcgcgacgcgcggcgggtgtccctgatgcacaacggcatcgaggacgtgccggcgaagacggggggcgccctcgcggacgcgcagccggagacgctgatgctccagtgcaaccgtgccctgccgaagaggatgatccaggcgatccagcacttcacaaggctgacctaccttgacatggaggagaccggcatcgtcgacgcgttcccgatggagatctgctgcttggtcaacctggagtacctcaacctctccaagaacaggatcctgtcgctgccgatggagctgagcaacctgagccagctcaagtacctctacctgcgcgacaactactacatccagatcaccataccggccgggctgatctcacggctcgggaagctgcaggtgctcgaactgttcaccgcgagcatcgtctccatcgcggacgactacatcgcgccggtaattgatgatcttgagagcagcggcgcgcagctgacggcgctgggcctgtggctggacagcaccagggacgtggcgaggctcgcgaggctggcacctggcgtgcgcgcccggtcgctccacctccgcaagctgcaggacggcacgcggtccctgccgctgctgtccgcgcagcacgcggcggagttcggcggcgtgcaggagagcatcagggagatgaccatctactcctgcgacgtcgaggagatcgtcgccgacgcacgcgcgccgaggctggaggtgatcaagttcgggttcctgacgaagctccgcaccgtggcgtggtcccacggggcggcgtccaacctccgggaggtggccatcggcgcgtgccacgccgtggcgcacctgacgtgggtgcagcacctcccgcacctggagtcgctcaacctcagcgggtgcaacggcatgacgacgctgctgggcggcgccgcgaacggtggcagcgcggcgggtgagctggtgacgttcccgcggctgcgtctgctggcgctgctgggtctgcccaagctggaggccatccgcggcgacggcggggagtgcgcgttcccggagctccggcgcgtgcagacgaggggttgcccgcggctgaggcgcatcccgatgcggccggcggcgagcgggcagtgcaaggtgagggtggagtgcgacaagcactggtggggcgcgctgcagtgggcgagcgacgacgtcaagtcctacttcgcgcccgtgctgatctga
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| Protein seq | MEMQLAAVLASLALGGALLVLVFGKWWQPLADADRRVKELADAVEALLQLRSELLKVEPAPPESDQLARAWLRRVQEAQDEVASLKARHDGGQLYVLRLVQYFVSTAPVAGSAEKQLKAVRALREQGEALLEAALSTPQAPPPLLRQPEELELPPGTSLTRPYLNEALRFLGDCDAALGVWGAGGVGKTTVLTHVRDACGLVAPFDHVLLVAASRDCTVAKLQREVVGVLGLRDAPTEQAQAAGILSFLRDKSFLLLLDGVWERLDLERVGIPQPLGMVAGRVRKVVVASRSEAVCADMGCRKKIKMECLSEEDAWNLFEANAREETIHRHPRIPALSRQVASECKGLPLSLVTVGRAMSSKRTPKEWGDALDALKKTKLSSAPGPDKIAHPLVKFCYDNLENDMTRECFLACALWPEDHNISKDELVQCWTGLGLLPELADVDEAHRLAHSVISVLEASRLVERGDNHRYNMFPSDTHVRLHDVVRDAALRFAPGKWLVRAGAGLREPPREEALWRDARRVSLMHNGIEDVPAKTGGALADAQPETLMLQCNRALPKRMIQAIQHFTRLTYLDMEETGIVDAFPMEICCLVNLEYLNLSKNRILSLPMELSNLSQLKYLYLRDNYYIQITIPAGLISRLGKLQVLELFTASIVSIADDYIAPVIDDLESSGAQLTALGLWLDSTRDVARLARLAPGVRARSLHLRKLQDGTRSLPLLSAQHAAEFGGVQESIREMTIYSCDVEEIVADARAPRLEVIKFGFLTKLRTVAWSHGAASNLREVAIGACHAVAHLTWVQHLPHLESLNLSGCNGMTTLLGGAANGGSAAGELVTFPRLRLLALLGLPKLEAIRGDGGECAFPELRRVQTRGCPRLRRIPMRPAASGQCKVRVECDKHWWGALQWASDDVKSYFAPVLI |
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| Function | Disease resistance protein RPS2 [UniProtKB/Swiss-Prot:Q42484] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0011140 | OsKeNa_03g0011140.01 | Chr03 | 8349818 | 8353587 | - | NAM | ||
| CDS seq | atggagatgcagctcgccgccgtcctcgcctcgctcgccctcggcggcgcgctgctcgtgctcgtcttcggcaagtggtggcagccgctggccgacgccgacaggcgcgtcaaggagctcgccgacgccgtggaggcgctgctgcagctgcggtccgagctgctcaaggtggagcccgcgccgccggagtcggaccagctggcgcgcgcgtggctgcggcgcgtgcaggaggcgcaggacgaggtcgcgtcgctcaaggcgcggcacgatggtggccagctctacgtgctccgcctcgtgcagtacttcgtctccacggcacccgtcgccgggtcggccgagaagcagctcaaggccgtccgcgcgctccgtgagcagggcgaggcgctgctcgaggccgcgctgtccacgccgcaggcgccgccgccgctgctccgccagccggaggagctggagctcccgccggggaccagtctcacgaggccctacctcaacgaggcgctccgcttcctcggcgactgcgacgccgcgctcggcgtctggggcgcggggggcgtgggcaagaccacggtgctcacgcacgtccgcgacgcgtgcggcctcgtcgcgccgttcgaccacgtcctgctcgtggcggcctccagggactgcacggtggcgaagctgcagagggaggtcgtgggcgtgctcggcctccgcgacgcgccgacggagcaggcgcaggccgctggcatcctgagcttcctcagggacaagagcttcctgctgctcctcgacggcgtgtgggagcgacttgacctggagagggtcggcatcccgcagccgctcggcatggtggccggccgggtgaggaaggtggtggtggcgtcgaggagcgaggcggtgtgcgccgacatgggatgccgcaagaagatcaagatggagtgcttgagcgaggaggatgcgtggaacctgttcgaggccaacgctcgcgaggagacgatccatcgccaccctcggattcctgcactttcaagacaggttgcttcagagtgcaagggcttgcctttgtccctcgtcaccgtcggccgcgccatgtcgagcaagcgcacaccgaaggagtggggcgacgcgctcgacgccctgaagaagacgaagctctcgagcgcgcccggcccggacaagatcgctcaccctctagtgaaattctgctacgacaatctggagaacgacatgacgagggagtgcttcctggcctgcgcgctctggccggaggatcacaacatctccaaggacgagctcgtccagtgctggacagggctcggcctgctcccggagctcgccgacgtcgacgaggcgcaccggctcgcgcactcggtgatctccgtgctggaggcgtcgcggctggtggagcgcggggacaaccaccggtacaacatgttcccgtccgacacgcacgtcaggctccacgacgtcgtccgcgacgcggcgctccggttcgcgcctggcaagtggctggtccgcgccggcgccgggctgagggagccgccgcgggaggaggcgctgtggcgcgacgcgcggcgggtgtccctgatgcacaacggcatcgaggacgtgccggcgaagacggggggcgccctcgcggacgcgcagccggagacgctgatgctccagtgcaaccgtgccctgccgaagaggatgatccaggcgatccagcacttcacaaggctgacctaccttgacatggaggagaccggcatcgtcgacgcgttcccgatggagatctgctgcttggtcaacctggagtacctcaacctctccaagaacaggatcctgtcgctgccgatggagctgagcaacctgagccagctcaagtacctctacctgcgcgacaactactacatccagatcaccataccggccgggctgatctcacggctcgggaagctgcaggtgctcgaactgttcaccgcgagcatcgtctccatcgcggacgactacatcgcgccggtaattgatgatcttgagagcagcggcgcgcagctgacggcgctgggcctgtggctggacagcaccagggacgtggcgaggctcgcgaggctggcacctggcgtgcgcgcccggtcgctccacctccgcaagctgcaggacggcacgcggtccctgccgctgctgtccgcgcagcacgcggcggagttcggcggcgtgcaggagagcatcagggagatgaccatctactcctgcgacgtcgaggagatcgtcgccgacgcacgcgcgccgaggctggaggtgatcaagttcgggttcctgacgaagctccgcaccgtggcgtggtcccacggggcggcgtccaacctccgggaggtggccatcggcgcgtgccacgccgtggcgcacctgacgtgggtgcagcacctcccgcacctggagtcgctcaacctcagcgggtgcaacggcatgacgacgctgctgggcggcgccgcgaacggtggcagcgcggcgggtgagctggtgacgttcccgcggctgcgtctgctggcgctgctgggtctgcccaagctggaggccatccgcggcgacggcggggagtgcgcgttcccggagctccggcgcgtgcagacgaggggttgcccgcggctgaggcgcatcccgatgcggccggcggcgagcgggcagtgcaaggtgagggtggagtgcgacaagcactggtggggcgcgctgcagtgggcgagcgacgacgtcaagtcctacttcgcgcccgtgctgatctga
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| Protein seq | MEMQLAAVLASLALGGALLVLVFGKWWQPLADADRRVKELADAVEALLQLRSELLKVEPAPPESDQLARAWLRRVQEAQDEVASLKARHDGGQLYVLRLVQYFVSTAPVAGSAEKQLKAVRALREQGEALLEAALSTPQAPPPLLRQPEELELPPGTSLTRPYLNEALRFLGDCDAALGVWGAGGVGKTTVLTHVRDACGLVAPFDHVLLVAASRDCTVAKLQREVVGVLGLRDAPTEQAQAAGILSFLRDKSFLLLLDGVWERLDLERVGIPQPLGMVAGRVRKVVVASRSEAVCADMGCRKKIKMECLSEEDAWNLFEANAREETIHRHPRIPALSRQVASECKGLPLSLVTVGRAMSSKRTPKEWGDALDALKKTKLSSAPGPDKIAHPLVKFCYDNLENDMTRECFLACALWPEDHNISKDELVQCWTGLGLLPELADVDEAHRLAHSVISVLEASRLVERGDNHRYNMFPSDTHVRLHDVVRDAALRFAPGKWLVRAGAGLREPPREEALWRDARRVSLMHNGIEDVPAKTGGALADAQPETLMLQCNRALPKRMIQAIQHFTRLTYLDMEETGIVDAFPMEICCLVNLEYLNLSKNRILSLPMELSNLSQLKYLYLRDNYYIQITIPAGLISRLGKLQVLELFTASIVSIADDYIAPVIDDLESSGAQLTALGLWLDSTRDVARLARLAPGVRARSLHLRKLQDGTRSLPLLSAQHAAEFGGVQESIREMTIYSCDVEEIVADARAPRLEVIKFGFLTKLRTVAWSHGAASNLREVAIGACHAVAHLTWVQHLPHLESLNLSGCNGMTTLLGGAANGGSAAGELVTFPRLRLLALLGLPKLEAIRGDGGECAFPELRRVQTRGCPRLRRIPMRPAASGQCKVRVECDKHWWGALQWASDDVKSYFAPVLI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.406603 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0254000 | RBH | 0.077482 | 0.0 | 2.632422 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g14900 | RBH | 0.051498 | 0.0 | 0.666011 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0254000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0011300 | RBH | 0.060359 | 0.0 | 1.344230 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0011150 | RBH | 0.133996 | 0.0 | 1.748740 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0011120 | RBH | 0.022234 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0010990 | RBH | 0.0 | 0.0 | 0.721146 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0138000 | RBH | 6.136886 | 0.089319 | 29.1961375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0010880 | RBH | 0.030853 | 0.0 | 0.078340 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0138300 | RBH | 7.2813155 | 0.0216975 | 25.2911365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0011030 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0011110 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0011080 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0011060 | RBH | 0.000000 | 0.0 | 0.256440 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0010990 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G010980 | RBH | 0.049979 | 0.0 | 1.466006 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0010850 | RBH | 0.000000 | 0.0 | 1.225127 |
