Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0006110 | OGI:03011520 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:4320949-4322894 | ||||||||
| Gene Symbol | EBP-89, OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89, DLN76, OsDLN76 | ||||||||||
| DNA seq | taatttgctcatgtttgaaattttgttcccatgacaaaccatctgatgaagagctgaaaaccaaaatttagttgctactattatttatttctatattttacacatcaagctaaaatactattgttcctcacaaaattaaagcttgcaaagtcacaaggatacaagatccacacacacaatcccacaaactttacacaggcactttgcaggcttgcagcacaacgcccagttgcagctcaaaagcaagcaaggcaaacggacgtctggcccacatgtcagcctcacagtgaaggtgaaacaccatatggcatagtgcagagttcagacttcagacaagctcaaacattcagagttcagttcagcaagatcgtcagtcgagcagaagagaggcctgcctgacaaggtggcctctgcgctcgaacacctgcctcctgcgcctctcgaggtccctctccacggcggcgatctcctccatctcgcggtcgcattcggcgatcatcgccgcatactgcagctgcagcgccatggacaggggcaccatgtttctgctgctgctcgcgtcctcctccatgagctcaggtgtggcgctcgccatctgttcgtcgcgaggacactgcttgatcttgcactttgccgcgctcaatgcttcttgatctgcgacggcaacaagccaacaacgccaatacattagtaaatctacttgattcttcgaaatttgttggtttggtttgatcgagttcgcgcattttatcaaccttgatcatcattcatcagtgagaatattggaatcctttctttctttagcaaaaatcgagctcaaccgtatgatatgatgcgaacagggcaatgctccatgctacgagcctacgagccaagtttctccgccagcacaaatgcaaattcaaattcaacttctacatctcgcaacgaaaaaaaataaattaaactataactcgttaatgtatattcacaattaaatatttttatttcgttttgagatgtagaagttaattttaaacttgcatatttacaaagtgatatattacatgttaatacatcttgagatagggatcgaaatagtttcccgcctacgaggtggtagtacctgcataggctgctgcacggccagcactgcctgcgtctgcgtctgcggcgtcgacggccatggcgtcgtcgtcgtcaccggagacggccgccgcggggaggttgaggtcgatggtccagcagggccggtcgttactccggcgaggggagccatcgccgtcgcgggggaagttgagcctcgcgcccttgccgcggatgcggcgggcctcgcggtcgtaggccatggcggcctcctcggcgctgccgtacgtgccgagccacacgcgccgccccttcttggggtccctgatctccgccgcgaacctccccgacggccgaagccggacgcccctgtacttgctcttcttgctcgccttccgacgaccggccgccgccgccgccacgcgccgccgcggcctggagctcgaggagacatccgacgaaactgccgccggcgatcgatgaaatcaacagcaggagaagaaatcgtgtaaagttcaggttgccgtcaggtgaaaatccttcaagaaagcaggcaagatttctccatctcatcgtacaagaaaacgaaggtactgccttcgacttgggggacgacacacatgacacggccaaactctcgtcgccatcgtcggaaagctcgaactcatcgtcgtcgtcgtcgtcctcgaaaagctcgaactccgcctcgaagtcgacgtcggacttgcgcttccgggtggttctcctctcggcggcggggggagtcggggtcaccggcaggagctcggcggcggtcagccgccggggcaccctcgccggggtgaaatcggcgaggatcgcaccgccgcacatggcgcggcgcgctcttctttctccgggag
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| CDS seq | atgtgcggcggtgcgatcctcgccgatttcaccccggcgagggtgccccggcggctgaccgccgccgagctcctgccggtgaccccgactccccccgccgccgagaggagaaccacccggaagcgcaagtccgacgtcgacttcgaggcggagttcgagcttttcgaggacgacgacgacgacgatgagttcgagctttccgacgatggcgacgagagtttggccgtgtcatgtgtgtcgtcccccaagtcgaaggcagtaccttcgttttctttttcgtcggatgtctcctcgagctccaggccgcggcggcgcgtggcggcggcggcggccggtcgtcggaaggcgagcaagaagagcaagtacaggggcgtccggcttcggccgtcggggaggttcgcggcggagatcagggaccccaagaaggggcggcgcgtgtggctcggcacgtacggcagcgccgaggaggccgccatggcctacgaccgcgaggcccgccgcatccgcggcaagggcgcgaggctcaacttcccccgcgacggcgatggctcccctcgccggagtaacgaccggccctgctggaccatcgacctcaacctccccgcggcggccgtctccggtgacgacgacgacgccatggccgtcgacgccgcagacgcagacgcaggcagtgctggccgtgcagcagcctatgcaggtactaccacctcg
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| Protein seq | MCGGAILADFTPARVPRRLTAAELLPVTPTPPAAERRTTRKRKSDVDFEAEFELFEDDDDDDEFELSDDGDESLAVSCVSSPKSKAVPSFSFSSDVSSSSRPRRRVAAAAAGRRKASKKSKYRGVRLRPSGRFAAEIRDPKKGRRVWLGTYGSAEEAAMAYDREARRIRGKGARLNFPRDGDGSPRRSNDRPCWTIDLNLPAAAVSGDDDDAMAVDAADADAGSAGRAAAYAGTTTS |
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| Function | Ethylene-responsive transcription factor ERF073 [UniProtKB/Swiss-Prot:Q8H0T5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0006110 | OsKeNa_03g0006110.01 | Chr03 | 4320949 | 4322888 | - | NAM | ||
| CDS seq | atgtgcggcggtgcgatcctcgccgatttcaccccggcgagggtgccccggcggctgaccgccgccgagctcctgccggtgaccccgactccccccgccgccgagaggagaaccacccggaagcgcaagtccgacgtcgacttcgaggcggagttcgagcttttcgaggacgacgacgacgacgatgagttcgagctttccgacgatggcgacgagagtttggccgtgtcatgtgtgtcgtcccccaagtcgaaggcagtaccttcgttttctttttcgtcggatgtctcctcgagctccaggccgcggcggcgcgtggcggcggcggcggccggtcgtcggaaggcgagcaagaagagcaagtacaggggcgtccggcttcggccgtcggggaggttcgcggcggagatcagggaccccaagaaggggcggcgcgtgtggctcggcacgtacggcagcgccgaggaggccgccatggcctacgaccgcgaggcccgccgcatccgcggcaagggcgcgaggctcaacttcccccgcgacggcgatggctcccctcgccggagtaacgaccggccctgctggaccatcgacctcaacctccccgcggcggccgtctccggtgacgacgacgacgccatggccgtcgacgccgcagacgcagacgcaggcagtgctggccgtgcagcagcctatgcaggtactaccacctcg
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| Protein seq | MCGGAILADFTPARVPRRLTAAELLPVTPTPPAAERRTTRKRKSDVDFEAEFELFEDDDDDDEFELSDDGDESLAVSCVSSPKSKAVPSFSFSSDVSSSSRPRRRVAAAAAGRRKASKKSKYRGVRLRPSGRFAAEIRDPKKGRRVWLGTYGSAEEAAMAYDREARRIRGKGARLNFPRDGDGSPRRSNDRPCWTIDLNLPAAAVSGDDDDAMAVDAADADAGSAGRAAAYAGTTTS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0006110 | OsKeNa_03g0006110.02 | Chr03 | 4321060 | 4322894 | - | IsoSeq | ||
| CDS seq | atgagttcgagctttccgacgatggcgacgagagtttggccgtgtcatgtgtgtcgtcccccaagtcgaaggcagtaccttcgttttctttttcgtcggatgtctcctcgagctccaggccgcggcggcgcgtggcggcggcggcggccggtcgtcggaaggcgagcaagaagagcaagtacaggggcgtccggcttcggccgtcggggaggttcgcggcggagatcagggaccccaagaaggggcggcgcgtgtggctcggcacgtacggcagcgccgaggaggccgccatggcctacgaccgcgaggcccgccgcatccgcggcaagggcgcgaggctcaacttcccccgcgacggcgatggctcccctcgccggagtaacgaccggccctgctggaccatcgacctcaacctccccgcggcggccgtctccggtgacgacgacgacgccatggccgtcgacgccgcagacgcagacgcaggcagtgctggccgtgcagcagcctatgcagatcaagaag
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| Protein seq | MSSSFPTMATRVWPCHVCRPPSRRQYLRFLFRRMSPRAPGRGGAWRRRRPVVGRRARRASTGASGFGRRGGSRRRSGTPRRGGACGSARTAAPRRPPWPTTARPAASAARARGSTSPATAMAPLAGVTTGPAGPSTSTSPRRPSPVTTTTPWPSTPQTQTQAVLAVQQPMQIKK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr03 | 4321602 | 4322054 | - | OsKeNa_03g0006110.01 | OsKeNa_03g0006110.02,OsKeNa_03g0006110.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.074516 | 27.165424 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0182800 | RBH | 0.325757 | 0.000000 | 1.352156 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g08460 | RBH | 0.230913 | 0.000000 | 0.321540 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0182800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0006150 | RBH | 0.136379 | 33.347008 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0023410 | RBH | 0.161957 | 18.732086 | 1.229833 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0006130 | RBH | 0.0 | 2.344368 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0006120 | RBH | 0.0 | 0.044418 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0006070 | RBH | 0.0 | 15.995552 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0070700 | RBH | 0.2794 | 40.5242615 | 1.5546475 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0005970 | RBH | 0.0 | 0.212081 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0070900 | RBH | 0.036047 | 91.217598 | 0.018701 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0006030 | RBH | 0.0 | 2.719815 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0006050 | RBH | 0.0 | 73.630318 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0006040 | RBH | 0.0 | 87.325356 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0006060 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0006050 | RBH | 0.0 | 1.315778 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G006080 | RBH | 0.0 | 1.931395 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0005900 | RBH | 0.0 | 23.638721 | 0.0 |
