Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0005300 | OGI:03010100 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:3779262-3783128 | ||||||||
| Gene Symbol | RLCK102, OsRLCK102 | ||||||||||
| DNA seq | gagaagaaatgcaaagggagtatcatagcagcaacccaggcaccagaattcggcacccattatctcggcaaacaatttacattataatggacgtcagattctcgtgtcacacagataaaagaaatatcactagaaacagaaagttcctcgagaaaaaaaggacaaaaaaacactgcttacataacaaactatacagccgtgcagataaaagacctcttctatgttgcacttctagtgcactttggcagtcctatatcctggcaatggggatgctgctgctccaagtgagcgccgtggcgatggctggattctcatcggcgacttagggacggcgtttgaggttctccggatgtcaacctgtggtgaagccatattatatttggagtcctgcagctgctccagctcttccaagacctcagacatccgcgggcgcatcttggcatcattgcagatgcattgcaaggcgatgttcgcaatggcgtgggcgcctttcttcggatattggcctcccagctttgtatccatgacacggtacagcctacgcttgtcgcccaagtggggtttggcccagtcaactaggttctgctctatgcctggtttcgatttgtccagggcccgtcttcctgtgagcaactcaagcaacaccacaccaaagctgtagacatctgcctttgcagagaggcgacctataaagttttaggttaagtaacatgagaactggttgctccagatataaaccatacaatatctatttaattgctacgcagagtggtacatttcctcaatgaaaagattagtttgacttggcatttgacaatgtgccaggaattcagaaaatgaagacaaaataaaaggaaaggtatgactgactctcctgcgctggaattaagggaaaaaacatacaaaatatgatcctttgaaaaatggtaacatgataataattttttttctaacttaactaatatagtgatatgccttctgttatgtatctgggcatttggcaatatgcataagatgctttatgcagcaagataaattccagtgagcttgggaaatgtaaagcaatgacaccaagcttcattagcaatatttttagataattcaaagcttcagtagcacctggcagtcatatgtctgatcctagtttaaaccgatgctatataacagaaaagacttcccatgatttattcaaagcaaagaattaaaatttaacctgtcgcaatgtactccggagctgcatatccgtgagtacccatgacctgtgtggaaacatgggtcttatccccagtaggacctgcttttgctaaaccaaaatctgagagcttggaattaaattcctgcaattaaccaaggggaaaaatgttgatagaacatctcaacaagctatacaagcttgatgattagagtcaacattaattatcaaccataccgagtcaaggagaatgtttgatgccttgaaatcacgatatataacttggttctcagcgtcatgcaaaaacgacaagcccctagcagcacctatagctaccttgagccttattgcccatgacaaaggatcagcacctcctacaagaatagaaaaaaaatgttatttgaactatgtgaacatttaagacatgagaaaccaggaaatcaagaaggcataaatatttttaatagagaacatacttctgaacagatgattctccaaacttccctttggcatgaactcatacaccagaagtcggttgtcgccatcagagcaatagccaatcagcttaacaagatttttgtggtgaagttggccaaggtagttaacctctgtctgcagcgtaaaaataggaataaggtatcgtgaaatatgtcttaagagaacagcagaaaacagcggtgggtaacattctgaacctaccagccattccttgtgtccttggaaaccttctggtttaagcttcttgacggcaacaaccataccacttcctggttttgaaggagcaagcgtgtgttcatcaatccaacctttgtagacatgtccaaatcctccttcaccaagaagactgtccggtcggaagttctttgtcgcattccttagatcattgaacgagaaggccttcaaatttgaagatgacaaaatttcaccttccgtccgaggagtaggaagctcacttctgtccttcatagatggcagagtcaaagtcgagcgacttgaattgctcttaaacgtggaagggacagatgataaacttgttttgctggtcacttttgatgggtctgctatctcaacaagaaattaatgaaatgtgcataagaacaacttgttattaacaaagcaatgtgaaattcaaaatgtatccaaaagcaccgcttctgttcaaattcaatcagaactctgcatatgtatggtcaggtcgtcaggactaccaagtcagattttcctgccattcatttaaagaaaatatccgactccctttttacaacaatagaagcttatgatatttcaatgaaccctatttctatgttctatcagagtcttcctttggtccttgggaggtattgagagttacatgtacctcatagtgttaatccagtctgatcaacacgaaaaattacctctgcctcccaaggactagagaaaacatgattttatccatgcatccatgctattgtttgtttactctatagaagtaagaaagaggaacaaaaacaaaagtgaagctgcacaaaagcagcaactaacaagctaggctaaaaaaaattatcatgcaaaaaaaaaaaaaaaaactaggccaacaggtataactagttgcagaacacatgctctgatcttaaaattttatcttcaacatagtcaaaccaaagtactaaacccaattcaacacacaataaatccacgatctagtaggacaaacaacccaacatcccaagcaaccaatatcagctttacagctatgataggaaagtgacaaatacatacaagacaaatttggaatttcgacgaagagagtatcaaggaaacttacaggcgccattgttcatgctgtgatccacccgcgccgtggtgtccatgcaattccccatctctcctgccctccctcttgctccttctcctctctatccaatccaccaaactatcagccacccatcaaactttgtgcctctgctgcaaatcctcttgggcactactactcaaccgtgcaatgaaccaagaaaccttctagcccaagaatctttggcagataagctctctcgagacaagggatggccaataatgcaaggaatcaagaggaacaggggctccaaatgagcacaaaactcagccaaacgagataagaaccgagcaggcaagcggcaaaggtccaatctttgcgaggtttcgatcgacctcgaccaccaatccggaaaaaaaaatccgcagagcgacaaacgaagcaaagaaccaaccaaccaaccccgaaagtcaactcgaacctgcacacgcgcagctcctcctcctcctcctcctcccaagctaaaaaaagatccggcctttcgatcgattcccgcgtgtcactggctcactgcctcacacgcgggaaggaaggaaagaaacaaacgaacccaCccccaatccgcaagaaagaaacgaggccacagaaactctactcgctcatcctgaagagtcgtcgcagctgaggtcaaccagcgaggatttgagctaatagcggctgctgtggtagctgcctgccacgccgtggctgcacgcggaggaggaggagagggacgcacgacacgaaggcggcagaggcagcgaggtggatggctcggagaccgcagggagatgggagggagggaagggagcgagaagagacggagaaaagcggcggaagcaaaatcagctggctggctggc
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| CDS seq | atggggaattgcatggacaccacggcgcgggtggatcacagcatgaacaatggcgcctcagacccatcaaaagtgaccagcaaaacaagtttatcatctgtcccttccacgtttaagagcaattcaagtcgctcgactttgactctgccatctatgaaggacagaagtgagcttcctactcctcggacggaaggtgaaattttgtcatcttcaaatttgaaggccttctcgttcaatgatctaaggaatgcgacaaagaacttccgaccggacagtcttcttggtgaaggaggatttggacatgtctacaaaggttggattgatgaacacacgcttgctccttcaaaaccaggaagtggtatggttgttgccgtcaagaagcttaaaccagaaggtttccaaggacacaaggaatggctgacagaggttaactaccttggccaacttcaccacaaaaatcttgttaagctgattggctattgctctgatggcgacaaccgacttctggtgtatgagttcatgccaaagggaagtttggagaatcatctgttcagaagaggtgctgatcctttgtcatgggcaataaggctcaaggtagctataggtgctgctaggggcttgtcgtttttgcatgacgctgagaaccaagttatatatcgtgatttcaaggcatcaaacattctccttgactcggaatttaattccaagctctcagattttggtttagcaaaagcaggtcctactggggataagacccatgtttccacacaggtcatgggtactcacggatatgcagctccggagtacattgcgacaggtcgcctctctgcaaaggcagatgtctacagctttggtgtggtgttgcttgagttgctcacaggaagacgggccctggacaaatcgaaaccaggcatagagcagaacctagttgactgggccaaaccccacttgggcgacaagcgtaggctgtaccgtgtcatggatacaaagctgggaggccaatatccgaagaaaggcgcccacgccattgcgaacatcgccttgcaatgcatctgcaatgatgccaagatgcgcccgcggatgtctgaggtcttggaagagctggagcagctgcaggactccaaatataatatggcttcaccacaggttgacatccggagaacctcaaacgccgtccctaagtcgccgatgagaatccagccatcgccacggcgctcacttggagcagcagcatccccattgccaggatataggactgccaaagtgcac
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| Protein seq | MGNCMDTTARVDHSMNNGASDPSKVTSKTSLSSVPSTFKSNSSRSTLTLPSMKDRSELPTPRTEGEILSSSNLKAFSFNDLRNATKNFRPDSLLGEGGFGHVYKGWIDEHTLAPSKPGSGMVVAVKKLKPEGFQGHKEWLTEVNYLGQLHHKNLVKLIGYCSDGDNRLLVYEFMPKGSLENHLFRRGADPLSWAIRLKVAIGAARGLSFLHDAENQVIYRDFKASNILLDSEFNSKLSDFGLAKAGPTGDKTHVSTQVMGTHGYAAPEYIATGRLSAKADVYSFGVVLLELLTGRRALDKSKPGIEQNLVDWAKPHLGDKRRLYRVMDTKLGGQYPKKGAHAIANIALQCICNDAKMRPRMSEVLEELEQLQDSKYNMASPQVDIRRTSNAVPKSPMRIQPSPRRSLGAAASPLPGYRTAKVH |
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| Function | Probable serine/threonine-protein kinase PBL3 [UniProtKB/Swiss-Prot:O49840] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0005300 | OsKeNa_03g0005300.01 | Chr03 | 3779288 | 3783128 | - | NAM | ||
| CDS seq | atggggaattgcatggacaccacggcgcgggtggatcacagcatgaacaatggcgcctacccatcaaaagtgaccagcaaaacaagtttatcatctgtcccttccacgtttaagagcaattcaagtcgctcgactttgactctgccatctatgaaggacagaagtgagcttcctactcctcggacggaaggtgaaattttgtcatcttcaaatttgaaggccttctcgttcaatgatctaaggaatgcgacaaagaacttccgaccggacagtcttcttggtgaaggaggatttggacatgtctacaaaggttggattgatgaacacacgcttgctccttcaaaaccaggaagtggtatggttgttgccgtcaagaagcttaaaccagaaggtttccaaggacacaaggaatggctgacagaggttaactaccttggccaacttcaccacaaaaatcttgttaagctgattggctattgctctgatggcgacaaccgacttctggtgtatgagttcatgccaaagggaagtttggagaatcatctgttcagaagaggtgctgatcctttgtcatgggcaataaggctcaaggtagctataggtgctgctaggggcttgtcgtttttgcatgacgctgagaaccaagttatatatcgtgatttcaaggcatcaaacattctccttgactcggaatttaattccaagctctcagattttggtttagcaaaagcaggtcctactggggataagacccatgtttccacacaggtcatgggtactcacggatatgcagctccggagtacattgcgacaggtcgcctctctgcaaaggcagatgtctacagctttggtgtggtgttgcttgagttgctcacaggaagacgggccctggacaaatcgaaaccaggcatagagcagaacctagttgactgggccaaaccccacttgggcgacaagcgtaggctgtaccgtgtcatggatacaaagctgggaggccaatatccgaagaaaggcgcccacgccattgcgaacatcgccttgcaatgcatctgcaatgatgccaagatgcgcccgcggatgtctgaggtcttggaagagctggagcagctgcaggactccaaatataatatggcttcaccacaggttgacatccggagaacctcaaacgccgtccctaagtcgccgatgagaatccagccatcgccacggcgctcacttggagcagcagcatccccattgccaggatataggactgccaaagtgcac
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| Protein seq | MGNCMDTTARVDHSMNNGAYPSKVTSKTSLSSVPSTFKSNSSRSTLTLPSMKDRSELPTPRTEGEILSSSNLKAFSFNDLRNATKNFRPDSLLGEGGFGHVYKGWIDEHTLAPSKPGSGMVVAVKKLKPEGFQGHKEWLTEVNYLGQLHHKNLVKLIGYCSDGDNRLLVYEFMPKGSLENHLFRRGADPLSWAIRLKVAIGAARGLSFLHDAENQVIYRDFKASNILLDSEFNSKLSDFGLAKAGPTGDKTHVSTQVMGTHGYAAPEYIATGRLSAKADVYSFGVVLLELLTGRRALDKSKPGIEQNLVDWAKPHLGDKRRLYRVMDTKLGGQYPKKGAHAIANIALQCICNDAKMRPRMSEVLEELEQLQDSKYNMASPQVDIRRTSNAVPKSPMRIQPSPRRSLGAAASPLPGYRTAKVH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0005300 | OsKeNa_03g0005300.02 | Chr03 | 3779288 | 3783128 | - | NAM | ||
| CDS seq | atggggaattgcatggacaccacggcgcgggtggatcacagcatgaacaatggcgcctcagacccatcaaaagtgaccagcaaaacaagtttatcatctgtcccttccacgtttaagagcaattcaagtcgctcgactttgactctgccatctatgaaggacagaagtgagcttcctactcctcggacggaaggtgaaattttgtcatcttcaaatttgaaggccttctcgttcaatgatctaaggaatgcgacaaagaacttccgaccggacagtcttcttggtgaaggaggatttggacatgtctacaaaggttggattgatgaacacacgcttgctccttcaaaaccaggaagtggtatggttgttgccgtcaagaagcttaaaccagaaggtttccaaggacacaaggaatggctgacagaggttaactaccttggccaacttcaccacaaaaatcttgttaagctgattggctattgctctgatggcgacaaccgacttctggtgtatgagttcatgccaaagggaagtttggagaatcatctgttcagaagaggtgctgatcctttgtcatgggcaataaggctcaaggtagctataggtgctgctaggggcttgtcgtttttgcatgacgctgagaaccaagttatatatcgtgatttcaaggcatcaaacattctccttgactcggaatttaattccaagctctcagattttggtttagcaaaagcaggtcctactggggataagacccatgtttccacacaggtcatgggtactcacggatatgcagctccggagtacattgcgacaggtcgcctctctgcaaaggcagatgtctacagctttggtgtggtgttgcttgagttgctcacaggaagacgggccctggacaaatcgaaaccaggcatagagcagaacctagttgactgggccaaaccccacttgggcgacaagcgtaggctgtaccgtgtcatggatacaaagctgggaggccaatatccgaagaaaggcgcccacgccattgcgaacatcgccttgcaatgcatctgcaatgatgccaagatgcgcccgcggatgtctgaggtcttggaagagctggagcagctgcaggactccaaatataatatggcttcaccacaggttgacatccggagaacctcaaacgccgtccctaagtcgccgatgagaatccagccatcgccacggcgctcacttggagcagcagcatccccattgccaggatataggactgccaaagtgcac
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| Protein seq | MGNCMDTTARVDHSMNNGASDPSKVTSKTSLSSVPSTFKSNSSRSTLTLPSMKDRSELPTPRTEGEILSSSNLKAFSFNDLRNATKNFRPDSLLGEGGFGHVYKGWIDEHTLAPSKPGSGMVVAVKKLKPEGFQGHKEWLTEVNYLGQLHHKNLVKLIGYCSDGDNRLLVYEFMPKGSLENHLFRRGADPLSWAIRLKVAIGAARGLSFLHDAENQVIYRDFKASNILLDSEFNSKLSDFGLAKAGPTGDKTHVSTQVMGTHGYAAPEYIATGRLSAKADVYSFGVVLLELLTGRRALDKSKPGIEQNLVDWAKPHLGDKRRLYRVMDTKLGGQYPKKGAHAIANIALQCICNDAKMRPRMSEVLEELEQLQDSKYNMASPQVDIRRTSNAVPKSPMRIQPSPRRSLGAAASPLPGYRTAKVH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0005300 | OsKeNa_03g0005300.03 | Chr03 | 3779262 | 3782866 | - | IsoSeq | ||
| CDS seq | atgtttccacacaggtcatgggtactcacggatatgcagctccggagtacattgcgacaggtcgcctctctgcaaaggcagatgtctacagctttggtgtggtgttgcttgagttgctcacaggaagacgggccctggacaaatcgaaaccag |
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| Protein seq | MFPHRSWVLTDMQLRSTLRQVASLQRQMSTALVWCCLSCSQEDGPWTNRNQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 3781511 | 3782261 | - | OsKeNa_03g0005300.03 | OsKeNa_03g0005300.03,OsKeNa_03g0005300.01 | All |
| A3 | Chr03 | 3781514 | 3782261 | - | OsKeNa_03g0005300.03 | OsKeNa_03g0005300.03,OsKeNa_03g0005300.02 | All |
| A3 | Chr03 | 3781511 | 3782261 | - | OsKeNa_03g0005300.02 | OsKeNa_03g0005300.01,OsKeNa_03g0005300.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.954734 | 9.800400 | 4.493157 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0170400 | RBH | 3.057009 | 3.349973 | 6.171246 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g07430 | RBH | 1.784993 | 2.102728 | 1.441683 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0170400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0005370 | RBH | 2.144580 | 53.865643 | 13.137416 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0010150 | RBH | 0.122965 | 0.000000 | 1.746495 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0005340 | RBH | 3.949689 | 45.111233 | 12.761223 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0005280 | RBH | 0.387593 | 0.668950 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0005300 | RBH | 18.444784 | 46.538670 | 46.470272 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0060700 | RBH | 17.5947415 | 49.922617 | 31.122534 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0005190 | RBH | 0.870404 | 3.562847 | 2.377496 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0061000 | RBH | 21.1308795 | 65.9913905 | 11.0473585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0005280 | RBH | 0.735334 | 1.409212 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0005280 | RBH | 2.516513 | 34.274868 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0005240 | RBH | 10.207515 | 92.228157 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0005280 | RBH | 2.082462 | 6.294157 | 2.753437 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0005260 | RBH | 0.782342 | 34.527695 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G005270 | RBH | 2.000324 | 4.842327 | 4.036459 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0005110 | RBH | 3.062293 | 117.332298 | 10.972964 |
