Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0005120 | OGI:03009830 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:3710516-3713124 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gataaaaacagtgatatgctttattattcatggttctctttcttctggggagaactggaagatccaccttttggcaaaacaattcacagctttcataatacaattggctgctacagagcaatggcaactgagcgtaagtgcgtaacactttaacaaaattaataaagctcaaaacaattaatattctgcaggcatattgcacaggccagtattggcttcagaatacacagaaattgtaacaaagcaaactgcttttgttcttacccaagaataaccattatattctgtaaaataatatgggtaatttggccatttctttgcaaaggcaaacatgcaatttcgcacagttcagatccttgtccacaatttgttttgatcattgcaatcccttcttgcagaaccatcaacttatgcttatttacaaccatacaggcatcgatgacagcatcactcttttgtcgctcatgtagcttttttcacttgcacaaacacagtgccatactcccattgtacaaatgatgtgcaaactgatgtttggatggattgaagatgtttcacatatttatagccacgatccacgactcattaccttgtttatataattgagttcaggaaagggttgcatctgtactaaaaaggatatcagaagataacacaatggaggatatgtataaccacaagccatggctgcacatcttgttgttacaaattgttcacctttatgtagcttatgcagcttgggctgatgtttatctgcttgactagaaatccaaacaatagcctgtgatgcaacctctctgagtctgacaagattagacccatttcattaatatatcatcataagtactagaattcactattcaggatagcttgttgttcttcgcgcacatacatctgcatcattttctttcccatttcccatatgtgatattcagtttctgatccagaacagagcttcacaactgatatcctcaaccaatgaatccttttctttcagaatgtgatctcgactgtccaaaagactgaattatatccttcacactgccatctacaaacgtttgacctgcttctttgttgacaccactgtcatccattaactttctcattttctctgacccaaaccattctccaacagatgcatagatgtttgagaggagaacataatcaccgctttcatcattccttgcctttagcagttgcctatttgcatgtttagccagttcgatctcaccatgaaccctacaagccgaaagtagtgttctccaaatgacagaattaggctcacatttcatcgtatcaatgaactcaaatgcttcttttagtagcccagcacgacccagcatgtccaccatgcaaccgtagtgcttgatattgggttcaaccctgtacttatgctgcatcaagttgaagaattcacgtcccttgtcaaccatcccgccgtggctgcaggcgataaggacagcaacaaaggtgatctcatctggcctgaccttccccttcagcatcttctcaaacatatctatggattccaggacatgcccatgcagtgccagtcctcctacaattgagttccaagttgagacgtccttgtctcgcattgaccagaacacctcatgtgcacttttcatgctcccacattttgcatacatgtcaatcagtgcatttcctagaacaactggaaacccatttcttgaaaacatatctgaaagagaggaatgcagcctctggccaacgtccagatcaccagagtcagcacaagctgacagcaagctgagcattgtgacaatatctggcttttcacccatgcgctgcatctgctcaaacaactccagtgcatgcaaatgcgagccacatctcacatacccagaaatcatcacgttccaggacacgacatctcgctcgggtacctggtcgaatagctcccttgccaatgccatatctccccgcttcgcatacgcggtgatcatcacattccaggacacgaggtccttcacaggacattcgtcgaacaggtcccgtgcagcaccaatgtcccctcgccttgcacaccccgtgatcatcgccgaccaagccacggcatcctcacgagctctgccatcgaacagagcagccgcaatgcccaaattcccgcagctcgcgtgcatgccaatgagcgcgttcttgacgaacgcgtcggactcgcagccagccttcacaacgtgggcgtgcacctgaaccccggtgtcccccgcgcccatggcggtgcaagcgcggagcacgaacgggaacgtgagcttgtcgggcctcacgccgccgccgccgccgcgccgcagcatgcgcgtgtacagggagacagcgtcccggggcgcggccgtgtgggcggcgccgcggatgagggtgttgtacatgaagcggtccgggcggggtatttggtcgaacacgaggtaggcgtgcgcgatggcgccgcggaccgcgacggcggaggcgaaaaggagctcgcggagctcggagggatcggagaggaagccccggagcgccatcaccgcgtgcatctgcttgatgtgtcgcaggctccggcaccgccgccacgccggcggctgccgccgctgcgtccccgacttccgcaacat
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| CDS seq | atgttgcggaagtcggggacgcagcggcggcagccgccggcgtggcggcggtgccggagcctgcgacacatcaagcagatgcacgcggtgatggcgctccggggcttcctctccgatccctccgagctccgcgagctccttttcgcctccgccgtcgcggtccgcggcgccatcgcgcacgcctacctcgtgttcgaccaaataccccgcccggaccgcttcatgtacaacaccctcatccgcggcgccgcccacacggccgcgccccgggacgctgtctccctgtacacgcgcatgctgcggcgcggcggcggcggcggcgtgaggcccgacaagctcacgttcccgttcgtgctccgcgcttgcaccgccatgggcgcgggggacaccggggttcaggtgcacgcccacgttgtgaaggctggctgcgagtccgacgcgttcgtcaagaacgcgctcattggcatgcacgcgagctgcgggaatttgggcattgcggctgctctgttcgatggcagagctcgtgaggatgccgtggcttggtcggcgatgatcacggggtgtgcaaggcgaggggacattggtgctgcacgggacctgttcgacgaatgtcctgtgaaggacctcgtgtcctggaatgtgatgatcaccgcgtatgcgaagcggggagatatggcattggcaagggagctattcgaccaggtacccgagcgagatgtcgtgtcctggaacgtgatgatttctgggtatgtgagatgtggctcgcatttgcatgcactggagttgtttgagcagatgcagcgcatgggtgaaaagccagatattgtcacaatgctcagcttgctgtcagcttgtgctgactctggtgatctggacgttggccagaggctgcattcctctctttcagatatgttttcaagaaatgggtttccagttgttctaggaaatgcactgattgacatgtatgcaaaatgtgggagcatgaaaagtgcacatgaggtgttctggtcaatgcgagacaaggacgtctcaacttggaactcaattgtaggaggactggcactgcatgggcatgtcctggaatccatagatatgtttgagaagatgctgaaggggaaggtcaggccagatgagatcacctttgttgctgtccttatcgcctgcagccacggcgggatggttgacaagggacgtgaattcttcaacttgatgcagcataagtacagggttgaacccaatatcaagcactacggttgcatggtggacatgctgggtcgtgctgggctactaaaagaagcatttgagttcattgatacgatgaaatgtgagcctaattctgtcatttggagaacactactttcggcttgtagggttcatggtgagatcgaactggctaaacatgcaaataggcaactgctaaaggcaaggaatgatgaaagcggtgattatgttctcctctcaaacatctatgcatctgttggagaatggtttgggtcagagaaaatgagaaagttaatggatgacagtggtgtcaacaaagaagcaggtcaaacgtttgtagatggcagtgtgaaggatataattcagtcttttggacagtcgagatcacattctgaaagaaaaggattcattggttga
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| Protein seq | MLRKSGTQRRQPPAWRRCRSLRHIKQMHAVMALRGFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNKEAGQTFVDGSVKDIIQSFGQSRSHSERKGFIG |
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| Function | Pentatricopeptide repeat-containing protein At5g15300 [UniProtKB/Swiss-Prot:Q9LXF2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0005120 | OsKeNa_03g0005120.01 | Chr03 | 3710516 | 3713124 | - | NAM | ||
| CDS seq | atgttgcggaagtcggggacgcagcggcggcagccgccggcgtggcggcggtgccggagcctgcgacacatcaagcagatgcacgcggtgatggcgctccggggcttcctctccgatccctccgagctccgcgagctccttttcgcctccgccgtcgcggtccgcggcgccatcgcgcacgcctacctcgtgttcgaccaaataccccgcccggaccgcttcatgtacaacaccctcatccgcggcgccgcccacacggccgcgccccgggacgctgtctccctgtacacgcgcatgctgcggcgcggcggcggcggcggcgtgaggcccgacaagctcacgttcccgttcgtgctccgcgcttgcaccgccatgggcgcgggggacaccggggttcaggtgcacgcccacgttgtgaaggctggctgcgagtccgacgcgttcgtcaagaacgcgctcattggcatgcacgcgagctgcgggaatttgggcattgcggctgctctgttcgatggcagagctcgtgaggatgccgtggcttggtcggcgatgatcacggggtgtgcaaggcgaggggacattggtgctgcacgggacctgttcgacgaatgtcctgtgaaggacctcgtgtcctggaatgtgatgatcaccgcgtatgcgaagcggggagatatggcattggcaagggagctattcgaccaggtacccgagcgagatgtcgtgtcctggaacgtgatgatttctgggtatgtgagatgtggctcgcatttgcatgcactggagttgtttgagcagatgcagcgcatgggtgaaaagccagatattgtcacaatgctcagcttgctgtcagcttgtgctgactctggtgatctggacgttggccagaggctgcattcctctctttcagatatgttttcaagaaatgggtttccagttgttctaggaaatgcactgattgacatgtatgcaaaatgtgggagcatgaaaagtgcacatgaggtgttctggtcaatgcgagacaaggacgtctcaacttggaactcaattgtaggaggactggcactgcatgggcatgtcctggaatccatagatatgtttgagaagatgctgaaggggaaggtcaggccagatgagatcacctttgttgctgtccttatcgcctgcagccacggcgggatggttgacaagggacgtgaattcttcaacttgatgcagcataagtacagggttgaacccaatatcaagcactacggttgcatggtggacatgctgggtcgtgctgggctactaaaagaagcatttgagttcattgatacgatgaaatgtgagcctaattctgtcatttggagaacactactttcggcttgtagggttcatggtgagatcgaactggctaaacatgcaaataggcaactgctaaaggcaaggaatgatgaaagcggtgattatgttctcctctcaaacatctatgcatctgttggagaatggtttgggtcagagaaaatgagaaagttaatggatgacagtggtgtcaacaaagaagcaggtcaaacgtttgtagatggcagtgtgaaggatataattcagtcttttggacagtcgagatcacattctgaaagaaaaggattcattggttga
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| Protein seq | MLRKSGTQRRQPPAWRRCRSLRHIKQMHAVMALRGFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNKEAGQTFVDGSVKDIIQSFGQSRSHSERKGFIG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.412190 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0168550 | RBH | 0.744794 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g07234 | RBH | 0.533277 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0168550 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0005190 | RBH | 0.072815 | 1.005799 | 0.121543 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0009870 | RBH | 0.0 | 0.0 | 0.533587 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0005160 | RBH | 0.0 | 0.0 | 0.252934 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0005100 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0005130 | RBH | 0.401396 | 0.0 | 0.644618 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0058800 | RBH | 0.2998875 | 0.293617 | 0.13103 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0005020 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0059000 | RBH | 0.2780355 | 0.30011 | 1.6741345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0005110 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0005100 | RBH | 0.069912 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0005070 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0005110 | RBH | 0.0 | 0.091537 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0005090 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G005100 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0004940 | RBH | 0.0 | 0.0 | 0.300848 |
