Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_03g0001680 | OGI:03003140 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr03:1168037-1169530 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagttcatcacgccaatcgtgaggccggcatcggcggcggcgggcggcggcgaggtgcaggagagtggtgggaggagcttggcggcggtggagaaggagcacatgttcgacaaggtggtgacgccgagcgacgtggggaagctgaaccggctggtgatcccgaagcagcacgcggagaagtacttcccgctggacgcggcgtccaacgagaaggggctcctgctcagcttcgaggaccgcacggggaagccatggcggttccgctactcctactggaacagcagccagagctacgtgatgaccaaggggtggagccgcttcgtcaaggagaagcgactcgacgccggggacaccgtctccttcggccgcggcgtcggcgaggccgcgcgcgggaggctcttcatcgactggcgccgccgccccgacgtcgtcgccgcgctccagccgcccacgcaccgcttcgcccaccacctcccttcctccatccccttcgctccctgggcgcaccaccacggacacggagccgccgccgccgccgccgccgccgccgccgccaggtttctcctgcctccctcctcgactcccatctacgaccaccaccgccgacacgcccacgccgtcgggtacgacgcgtacgccgcggccaccagcaggcaggtgctgttctaccggccgttgccgccgcagcagcagcatcatcccgcggtggtgctggagtcggtgccggtgcgcatgacggcggggcacgcggagccgccgtcggctccgtcgaagcgagttcggctgttcggggtgaacctcgactgcgcgaattccgaacaagaccacgccggcgtggtcgggaagacggcgccgccgccgctgccatcgccgccgtcatcatcgtcatcttcctccgggaaagcgaggtgctccttgaaccttgacttgtgaagagggtacggccgtacacgtacacgatctctgctactttatgcttcaattctgctactacgtactgacacaaatggaaatcgtcgacgaagagtgtggccggagaagtaaacaaaggcggcgatggcggcgcgcagcggcggcggtggcggcggaggtggaggcgcttggagcatctagcgccttcgtatttcgtatatagctcatcatctctcttaaattagtcagtgcagtgtgagggggaacagtttaagaaaaaagaacgaagcagcaacgtacccaaaaaaaataTtctttctaggttgatggttttttcttgcttcgatttgctttgccTttttctcttgtgcttaattataattaagttttcttagctgctcgatctcttctttgtgtctgggagaaaatatatactactggtactagtgattaggggaagaagaaggagaagaaaatataattgtttccaagaactccagcccaattgtatatatcatgactgagcctatggaaacaccggtgtgtgatcctcacatatgataacaatcaatttgcact
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| CDS seq | atggagttcatcacgccaatcgtgaggccggcatcggcggcggcgggcggcggcgaggtgcaggagagtggtgggaggagcttggcggcggtggagaaggagcacatgttcgacaaggtggtgacgccgagcgacgtggggaagctgaaccggctggtgatcccgaagcagcacgcggagaagtacttcccgctggacgcggcgtccaacgagaaggggctcctgctcagcttcgaggaccgcacggggaagccatggcggttccgctactcctactggaacagcagccagagctacgtgatgaccaaggggtggagccgcttcgtcaaggagaagcgactcgacgccggggacaccgtctccttcggccgcggcgtcggcgaggccgcgcgcgggaggctcttcatcgactggcgccgccgccccgacgtcgtcgccgcgctccagccgcccacgcaccgcttcgcccaccacctcccttcctccatccccttcgctccctgggcgcaccaccacggacacggagccgccgccgccgccgccgccgccgccgccgccaggtttctcctgcctccctcctcgactcccatctacgaccaccaccgccgacacgcccacgccgtcgggtacgacgcgtacgccgcggccaccagcaggcaggtgctgttctaccggccgttgccgccgcagcagcagcatcatcccgcggtggtgctggagtcggtgccggtgcgcatgacggcggggcacgcggagccgccgtcggctccgtcgaagcgagttcggctgttcggggtgaacctcgactgcgcgaattccgaacaagaccacgccggcgtggtcgggaagacggcgccgccgccgctgccatcgccgccgtcatcatcgtcatcttcctccgggaaagcgaggtgctccttgaaccttgacttgtga
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| Protein seq | MEFITPIVRPASAAAGGGEVQESGGRSLAAVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDAASNEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGVGEAARGRLFIDWRRRPDVVAALQPPTHRFAHHLPSSIPFAPWAHHHGHGAAAAAAAAAAARFLLPPSSTPIYDHHRRHAHAVGYDAYAAATSRQVLFYRPLPPQQQHHPAVVLESVPVRMTAGHAEPPSAPSKRVRLFGVNLDCANSEQDHAGVVGKTAPPPLPSPPSSSSSSSGKARCSLNLDL |
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| Function | B3 domain-containing protein Os03g0120900 [UniProtKB/Swiss-Prot:Q8LMR9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_03g0001680 | OsKeNa_03g0001680.01 | Chr03 | 1168037 | 1169530 | + | NAM | ||
| CDS seq | atggagttcatcacgccaatcgtgaggccggcatcggcggcggcgggcggcggcgaggtgcaggagagtggtgggaggagcttggcggcggtggagaaggagcacatgttcgacaaggtggtgacgccgagcgacgtggggaagctgaaccggctggtgatcccgaagcagcacgcggagaagtacttcccgctggacgcggcgtccaacgagaaggggctcctgctcagcttcgaggaccgcacggggaagccatggcggttccgctactcctactggaacagcagccagagctacgtgatgaccaaggggtggagccgcttcgtcaaggagaagcgactcgacgccggggacaccgtctccttcggccgcggcgtcggcgaggccgcgcgcgggaggctcttcatcgactggcgccgccgccccgacgtcgtcgccgcgctccagccgcccacgcaccgcttcgcccaccacctcccttcctccatccccttcgctccctgggcgcaccaccacggacacggagccgccgccgccgccgccgccgccgccgccgccaggtttctcctgcctccctcctcgactcccatctacgaccaccaccgccgacacgcccacgccgtcgggtacgacgcgtacgccgcggccaccagcaggcaggtgctgttctaccggccgttgccgccgcagcagcagcatcatcccgcggtggtgctggagtcggtgccggtgcgcatgacggcggggcacgcggagccgccgtcggctccgtcgaagcgagttcggctgttcggggtgaacctcgactgcgcgaattccgaacaagaccacgccggcgtggtcgggaagacggcgccgccgccgctgccatcgccgccgtcatcatcgtcatcttcctccgggaaagcgaggtgctccttgaaccttgacttgtga
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| Protein seq | MEFITPIVRPASAAAGGGEVQESGGRSLAAVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDAASNEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGVGEAARGRLFIDWRRRPDVVAALQPPTHRFAHHLPSSIPFAPWAHHHGHGAAAAAAAAAAARFLLPPSSTPIYDHHRRHAHAVGYDAYAAATSRQVLFYRPLPPQQQHHPAVVLESVPVRMTAGHAEPPSAPSKRVRLFGVNLDCANSEQDHAGVVGKTAPPPLPSPPSSSSSSSGKARCSLNLDL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.154683 | 0.102532 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0120900 | RBH | 0.0 | 0.331157 | 0.335234 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g02900 | RBH | 0.0 | 0.202379 | 0.078411 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0120900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0001690 | RBH | 0.0 | 0.837516 | 0.847599 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018780 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0001700 | RBH | 0.268824 | 4.481771 | 0.443171 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0001690 | RBH | 0.047990 | 0.125262 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0001730 | RBH | 0.0 | 1.161875 | 2.265184 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0018700 | RBH | 1.7989885 | 6.2652065 | 3.421096 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0001680 | RBH | 0.130223 | 0.181209 | 0.408048 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0018500 | RBH | 1.818051 | 2.7714005 | 3.4827925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0001750 | RBH | 0.082886 | 0.152437 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0001770 | RBH | 0.245086 | 4.065997 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0001720 | RBH | 0.0 | 8.230976 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0001750 | RBH | 0.124041 | 0.160651 | 0.308812 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0001760 | RBH | 0.049765 | 3.947702 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G001760 | RBH | 0.105507 | 0.0 | 0.034791 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0001600 | RBH | 0.0 | 0.0 | 0.743291 |
