Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0038560 | OGI:02098310 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:35374607-35377893 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgaaggcggcggagaagctggtggtggaggtggtggcggcgcacaacctcatgcccaaggacgggcaggggtcctcgtcggcgtacgtggaggtggagttcgagcaccagaggcggcggacgcgtgccaggcccaaggagctcaaccccgtctggaacgagcgcctcgtcttcgccgtcgccgaccccgacgacctcccctaccgcgccatcgacgtcggcgtctacaacgaccgcgccgcgtccgggggggtcgccggcggcggcggggcggcgccgcacggccgcaacttcctcggcaaggtccgcgtcccggccgccggcgtgccggcccccggggaggaggtggtgccgcagctcttcacgcttgagaagcgcagcctgttctcccacatccgcggcgagatcaccttgaagatttatcgcaccaactccggggaggttgtcgtcaagtccaagccggagaagccggtgaaggcggtggtgtcgggcccggaggtggtggccgcgccgccggtcaccgggcccaagaagcagcagcagcagcagccggtggtggccgtgcagccgccgcctccgcagccggaggcgcccatggacatcctgccgcccccggccccggtgctcatgaagccggtaatgctcgccgacccctaccccgcctcggccgtgttctccggccccggcgacttctctctcaaggagacgcggccccgcctcggcggcggcacgacggccgacaaggcgagcgcgacctacgacctggtcgagcagatgcagtacctgtacgtgcgcgtggtgcgcgcgcgcggcgtggcggcggtgggcgagaccgtcgcggaggtgaagctgggcaactaccgcggcgtgacgcccgccaccgccgcgcaccactgggaccaggtgttcgccttctccaaggagaccatccagtcctcgttcgtcgaggtgttcgtgcgcgcgcgcggcagcgacgaccacgtcggccgcgtctggttcgacctctccgaggtgccgcgccgagctccaccggacagcacgctcgcgccgcagtggcacatcatggaggaccgcaagggcgagcgcggcgccgcggaggtgatgatcgccgtctggttcggcacccaggccgacgaggccttcgccgaggcctggcattctaaggcggccggcgtccatggctacggaccattgggctccatcaagtccaaggtgtacgttgcccccaagctgtggtaccttcgtgtgtccgtcattgaggcgcaggacttgatccctatggacaagggaccaatggcgattggccggtatccggagctctttgtgcgtgcgcaggttgggagtcaaatgctgcgcacacggcctgcgccagtggcggcgaatcgaggaccatcaagcccgttctggaatgaagacctgatgtttgtggttgctgagccatttgaggagttcttggtgttgtctctggaggatcatgtgtcaccaggaagggatgatgtgcttggccgtcttgttgttccagtatcctccattgagaggcgctgggatgagaagcttgttgtctccaggtggtttgggctggatcgtggcactggtggtggcaatgttgcaagtggcaatacaaataggtttgggagccgtgtgcatctccgcttaagtcttgatgggggataccatgttctggatgaggctactgcttacagcagcgatctccggcctactggaaagcagctgtggcagccacatgttggggtgcttgagctcggtgtgcttggtgcgactggattgataccgatgaaggcccgtgatggcagaggtgcaacctcggatgcatactgtgttgcaaagtatggccagaagtggatccgcactcgtactgtcgtcgactctgtatgccctcggtggaatgagcagtacacatgggaggtgtttgacccttgcactgtcatcacggttggtgtgtttgacaattgccatgttgacaagccagcttctgggaataccacattggctgtccgtgataattgcattggcaaagtacgtatccggctttcaacattggagactgatagggtgtatacacatgcctacccacttctcatgctgcatccatcaggggtcaagaagatgggagagcttcacttagctgtgcgcttctgctgtggcaatgctggcaacatgttccatgcctatgtgcgtccgctgcttccaaagatgcactatattgagccactgcttgtgcgccaggttgagagcctccgctttcaggctaccaatgttgtagcagctcgccttggccgtgctgagccaccacttggcagagaggttgttgagtacatgctagaccaccgttcacatctatggagtatgagacgcagcaaagcaaactttttccgccttgtcactgtactctctggaccgatcactattggcagatggtttgaacttgtccgctcttggaatcgcccggtgcattcatgccttgctgtattcacattcctggtgtttgtcacaatgccggagctgattcttccgacggcattcttggcaatggcattcactgggttatggaggtaccgtgtccgctcaaggcacccgccccacatggagatgaggttgtctcatgcagacgcagccactgtggatgagctagatgaggagtttgacacattcccttcgagcaggggagatgttgtgcgcttcaggtatgaccgccttcgcagcgttgctgggagggtgcagacagtggttggcgacatagcaacacagggtgagcgaatgcaggcccttctcagctggcgtgacccgagggcaacagtgcttttctcaatcgcctgtgtccttgctgcggtcattgcatataccattccgatgaaggtgctggttgggctctggggcctgtatgctatgcgtccgccaagattccgcagcaggatgccatctccgctgatgaacttcttcaggaggctgccatccaaggctgacagccttctctgatcctcattgttgtgcagctgtagctaaccttgtggtctgataggtgattttggcccgaaggagatgcttcaaaggaatctaggaagaaacaaacttgcagtaggttcaggttgcttgcttgcttagtttaatgcttttaggtaatgtatgcttctctatgatgcaacttatagcagttgcagacttgttcttgtgcctttcagttccagttgtgcaaaaaggctagttgtgatgttaatgtgtaatgtggtgatgatgaattaatcaagttgatatttgaacttgtc
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| CDS seq | atggcgaaggcggcggagaagctggtggtggaggtggtggcggcgcacaacctcatgcccaaggacgggcaggggtcctcgtcggcgtacgtggaggtggagttcgagcaccagaggcggcggacgcgtgccaggcccaaggagctcaaccccgtctggaacgagcgcctcgtcttcgccgtcgccgaccccgacgacctcccctaccgcgccatcgacgtcggcgtctacaacgaccgcgccgcgtccgggggggtcgccggcggcggcggggcggcgccgcacggccgcaacttcctcggcaaggtccgcgtcccggccgccggcgtgccggcccccggggaggaggtggtgccgcagctcttcacgcttgagaagcgcagcctgttctcccacatccgcggcgagatcaccttgaagatttatcgcaccaactccggggaggttgtcgtcaagtccaagccggagaagccggtgaaggcggtggtgtcgggcccggaggtggtggccgcgccgccggtcaccgggcccaagaagcagcagcagcagcagccggtggtggccgtgcagccgccgcctccgcagccggaggcgcccatggacatcctgccgcccccggccccggtgctcatgaagccggtaatgctcgccgacccctaccccgcctcggccgtgttctccggccccggcgacttctctctcaaggagacgcggccccgcctcggcggcggcacgacggccgacaaggcgagcgcgacctacgacctggtcgagcagatgcagtacctgtacgtgcgcgtggtgcgcgcgcgcggcgtggcggcggtgggcgagaccgtcgcggaggtgaagctgggcaactaccgcggcgtgacgcccgccaccgccgcgcaccactgggaccaggtgttcgccttctccaaggagaccatccagtcctcgttcgtcgaggtgttcgtgcgcgcgcgcggcagcgacgaccacgtcggccgcgtctggttcgacctctccgaggtgccgcgccgagctccaccggacagcacgctcgcgccgcagtggcacatcatggaggaccgcaagggcgagcgcggcgccgcggaggtgatgatcgccgtctggttcggcacccaggccgacgaggccttcgccgaggcctggcattctaaggcggccggcgtccatggctacggaccattgggctccatcaagtccaaggtgtacgttgcccccaagctgtggtaccttcgtgtgtccgtcattgaggcgcaggacttgatccctatggacaagggaccaatggcgattggccggtatccggagctctttgtgcgtgcgcaggttgggagtcaaatgctgcgcacacggcctgcgccagtggcggcgaatcgaggaccatcaagcccgttctggaatgaagacctgatgtttgtggttgctgagccatttgaggagttcttggtgttgtctctggaggatcatgtgtcaccaggaagggatgatgtgcttggccgtcttgttgttccagtatcctccattgagaggcgctgggatgagaagcttgttgtctccaggtggtttgggctggatcgtggcactggtggtggcaatgttgcaagtggcaatacaaataggtttgggagccgtgtgcatctccgcttaagtcttgatgggggataccatgttctggatgaggctactgcttacagcagcgatctccggcctactggaaagcagctgtggcagccacatgttggggtgcttgagctcggtgtgcttggtgcgactggattgataccgatgaaggcccgtgatggcagaggtgcaacctcggatgcatactgtgttgcaaagtatggccagaagtggatccgcactcgtactgtcgtcgactctgtatgccctcggtggaatgagcagtacacatgggaggtgtttgacccttgcactgtcatcacggttggtgtgtttgacaattgccatgttgacaagccagcttctgggaataccacattggctgtccgtgataattgcattggcaaagtacgtatccggctttcaacattggagactgatagggtgtatacacatgcctacccacttctcatgctgcatccatcaggggtcaagaagatgggagagcttcacttagctgtgcgcttctgctgtggcaatgctggcaacatgttccatgcctatgtgcgtccgctgcttccaaagatgcactatattgagccactgcttgtgcgccaggttgagagcctccgctttcaggctaccaatgttgtagcagctcgccttggccgtgctgagccaccacttggcagagaggttgttgagtacatgctagaccaccgttcacatctatggagtatgagacgcagcaaagcaaactttttccgccttgtcactgtactctctggaccgatcactattggcagatggtttgaacttgtccgctcttggaatcgcccggtgcattcatgccttgctgtattcacattcctggtgtttgtcacaatgccggagctgattcttccgacggcattcttggcaatggcattcactgggttatggaggtaccgtgtccgctcaaggcacccgccccacatggagatgaggttgtctcatgcagacgcagccactgtggatgagctagatgaggagtttgacacattcccttcgagcaggggagatgttgtgcgcttcaggtatgaccgccttcgcagcgttgctgggagggtgcagacagtggttggcgacatagcaacacagggtgagcgaatgcaggcccttctcagctggcgtgacccgagggcaacagtgcttttctcaatcgcctgtgtccttgctgcggtcattgcatataccattccgatgaaggtgctggttgggctctggggcctgtatgctatgcgtccgccaagattccgcagcaggatgccatctccgctgatgaacttcttcaggaggctgccatccaaggctgacagccttctctga
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| Protein seq | MAKAAEKLVVEVVAAHNLMPKDGQGSSSAYVEVEFEHQRRRTRARPKELNPVWNERLVFAVADPDDLPYRAIDVGVYNDRAASGGVAGGGGAAPHGRNFLGKVRVPAAGVPAPGEEVVPQLFTLEKRSLFSHIRGEITLKIYRTNSGEVVVKSKPEKPVKAVVSGPEVVAAPPVTGPKKQQQQQPVVAVQPPPPQPEAPMDILPPPAPVLMKPVMLADPYPASAVFSGPGDFSLKETRPRLGGGTTADKASATYDLVEQMQYLYVRVVRARGVAAVGETVAEVKLGNYRGVTPATAAHHWDQVFAFSKETIQSSFVEVFVRARGSDDHVGRVWFDLSEVPRRAPPDSTLAPQWHIMEDRKGERGAAEVMIAVWFGTQADEAFAEAWHSKAAGVHGYGPLGSIKSKVYVAPKLWYLRVSVIEAQDLIPMDKGPMAIGRYPELFVRAQVGSQMLRTRPAPVAANRGPSSPFWNEDLMFVVAEPFEEFLVLSLEDHVSPGRDDVLGRLVVPVSSIERRWDEKLVVSRWFGLDRGTGGGNVASGNTNRFGSRVHLRLSLDGGYHVLDEATAYSSDLRPTGKQLWQPHVGVLELGVLGATGLIPMKARDGRGATSDAYCVAKYGQKWIRTRTVVDSVCPRWNEQYTWEVFDPCTVITVGVFDNCHVDKPASGNTTLAVRDNCIGKVRIRLSTLETDRVYTHAYPLLMLHPSGVKKMGELHLAVRFCCGNAGNMFHAYVRPLLPKMHYIEPLLVRQVESLRFQATNVVAARLGRAEPPLGREVVEYMLDHRSHLWSMRRSKANFFRLVTVLSGPITIGRWFELVRSWNRPVHSCLAVFTFLVFVTMPELILPTAFLAMAFTGLWRYRVRSRHPPHMEMRLSHADAATVDELDEEFDTFPSSRGDVVRFRYDRLRSVAGRVQTVVGDIATQGERMQALLSWRDPRATVLFSIACVLAAVIAYTIPMKVLVGLWGLYAMRPPRFRSRMPSPLMNFFRRLPSKADSLL |
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| Function | FT-interacting protein 3 [UniProtKB/Swiss-Prot:Q9M2R0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0038560 | OsKeNa_02g0038560.01 | Chr02 | 35374607 | 35377893 | + | NAM | ||
| CDS seq | atggcgaaggcggcggagaagctggtggtggaggtggtggcggcgcacaacctcatgcccaaggacgggcaggggtcctcgtcggcgtacgtggaggtggagttcgagcaccagaggcggcggacgcgtgccaggcccaaggagctcaaccccgtctggaacgagcgcctcgtcttcgccgtcgccgaccccgacgacctcccctaccgcgccatcgacgtcggcgtctacaacgaccgcgccgcgtccgggggggtcgccggcggcggcggggcggcgccgcacggccgcaacttcctcggcaaggtccgcgtcccggccgccggcgtgccggcccccggggaggaggtggtgccgcagctcttcacgcttgagaagcgcagcctgttctcccacatccgcggcgagatcaccttgaagatttatcgcaccaactccggggaggttgtcgtcaagtccaagccggagaagccggtgaaggcggtggtgtcgggcccggaggtggtggccgcgccgccggtcaccgggcccaagaagcagcagcagcagcagccggtggtggccgtgcagccgccgcctccgcagccggaggcgcccatggacatcctgccgcccccggccccggtgctcatgaagccggtaatgctcgccgacccctaccccgcctcggccgtgttctccggccccggcgacttctctctcaaggagacgcggccccgcctcggcggcggcacgacggccgacaaggcgagcgcgacctacgacctggtcgagcagatgcagtacctgtacgtgcgcgtggtgcgcgcgcgcggcgtggcggcggtgggcgagaccgtcgcggaggtgaagctgggcaactaccgcggcgtgacgcccgccaccgccgcgcaccactgggaccaggtgttcgccttctccaaggagaccatccagtcctcgttcgtcgaggtgttcgtgcgcgcgcgcggcagcgacgaccacgtcggccgcgtctggttcgacctctccgaggtgccgcgccgagctccaccggacagcacgctcgcgccgcagtggcacatcatggaggaccgcaagggcgagcgcggcgccgcggaggtgatgatcgccgtctggttcggcacccaggccgacgaggccttcgccgaggcctggcattctaaggcggccggcgtccatggctacggaccattgggctccatcaagtccaaggtgtacgttgcccccaagctgtggtaccttcgtgtgtccgtcattgaggcgcaggacttgatccctatggacaagggaccaatggcgattggccggtatccggagctctttgtgcgtgcgcaggttgggagtcaaatgctgcgcacacggcctgcgccagtggcggcgaatcgaggaccatcaagcccgttctggaatgaagacctgatgtttgtggttgctgagccatttgaggagttcttggtgttgtctctggaggatcatgtgtcaccaggaagggatgatgtgcttggccgtcttgttgttccagtatcctccattgagaggcgctgggatgagaagcttgttgtctccaggtggtttgggctggatcgtggcactggtggtggcaatgttgcaagtggcaatacaaataggtttgggagccgtgtgcatctccgcttaagtcttgatgggggataccatgttctggatgaggctactgcttacagcagcgatctccggcctactggaaagcagctgtggcagccacatgttggggtgcttgagctcggtgtgcttggtgcgactggattgataccgatgaaggcccgtgatggcagaggtgcaacctcggatgcatactgtgttgcaaagtatggccagaagtggatccgcactcgtactgtcgtcgactctgtatgccctcggtggaatgagcagtacacatgggaggtgtttgacccttgcactgtcatcacggttggtgtgtttgacaattgccatgttgacaagccagcttctgggaataccacattggctgtccgtgataattgcattggcaaagtacgtatccggctttcaacattggagactgatagggtgtatacacatgcctacccacttctcatgctgcatccatcaggggtcaagaagatgggagagcttcacttagctgtgcgcttctgctgtggcaatgctggcaacatgttccatgcctatgtgcgtccgctgcttccaaagatgcactatattgagccactgcttgtgcgccaggttgagagcctccgctttcaggctaccaatgttgtagcagctcgccttggccgtgctgagccaccacttggcagagaggttgttgagtacatgctagaccaccgttcacatctatggagtatgagacgcagcaaagcaaactttttccgccttgtcactgtactctctggaccgatcactattggcagatggtttgaacttgtccgctcttggaatcgcccggtgcattcatgccttgctgtattcacattcctggtgtttgtcacaatgccggagctgattcttccgacggcattcttggcaatggcattcactgggttatggaggtaccgtgtccgctcaaggcacccgccccacatggagatgaggttgtctcatgcagacgcagccactgtggatgagctagatgaggagtttgacacattcccttcgagcaggggagatgttgtgcgcttcaggtatgaccgccttcgcagcgttgctgggagggtgcagacagtggttggcgacatagcaacacagggtgagcgaatgcaggcccttctcagctggcgtgacccgagggcaacagtgcttttctcaatcgcctgtgtccttgctgcggtcattgcatataccattccgatgaaggtgctggttgggctctggggcctgtatgctatgcgtccgccaagattccgcagcaggatgccatctccgctgatgaacttcttcaggaggctgccatccaaggctgacagccttctctga
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| Protein seq | MAKAAEKLVVEVVAAHNLMPKDGQGSSSAYVEVEFEHQRRRTRARPKELNPVWNERLVFAVADPDDLPYRAIDVGVYNDRAASGGVAGGGGAAPHGRNFLGKVRVPAAGVPAPGEEVVPQLFTLEKRSLFSHIRGEITLKIYRTNSGEVVVKSKPEKPVKAVVSGPEVVAAPPVTGPKKQQQQQPVVAVQPPPPQPEAPMDILPPPAPVLMKPVMLADPYPASAVFSGPGDFSLKETRPRLGGGTTADKASATYDLVEQMQYLYVRVVRARGVAAVGETVAEVKLGNYRGVTPATAAHHWDQVFAFSKETIQSSFVEVFVRARGSDDHVGRVWFDLSEVPRRAPPDSTLAPQWHIMEDRKGERGAAEVMIAVWFGTQADEAFAEAWHSKAAGVHGYGPLGSIKSKVYVAPKLWYLRVSVIEAQDLIPMDKGPMAIGRYPELFVRAQVGSQMLRTRPAPVAANRGPSSPFWNEDLMFVVAEPFEEFLVLSLEDHVSPGRDDVLGRLVVPVSSIERRWDEKLVVSRWFGLDRGTGGGNVASGNTNRFGSRVHLRLSLDGGYHVLDEATAYSSDLRPTGKQLWQPHVGVLELGVLGATGLIPMKARDGRGATSDAYCVAKYGQKWIRTRTVVDSVCPRWNEQYTWEVFDPCTVITVGVFDNCHVDKPASGNTTLAVRDNCIGKVRIRLSTLETDRVYTHAYPLLMLHPSGVKKMGELHLAVRFCCGNAGNMFHAYVRPLLPKMHYIEPLLVRQVESLRFQATNVVAARLGRAEPPLGREVVEYMLDHRSHLWSMRRSKANFFRLVTVLSGPITIGRWFELVRSWNRPVHSCLAVFTFLVFVTMPELILPTAFLAMAFTGLWRYRVRSRHPPHMEMRLSHADAATVDELDEEFDTFPSSRGDVVRFRYDRLRSVAGRVQTVVGDIATQGERMQALLSWRDPRATVLFSIACVLAAVIAYTIPMKVLVGLWGLYAMRPPRFRSRMPSPLMNFFRRLPSKADSLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.016392 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0816000 | RBH | 0.0 | 0.034813 | 0.497818 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g57090 | RBH | 0.0 | 0.023408 | 0.128112 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0816000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0038530 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0038410 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0038040 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0038130 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0570300 | RBH | 1.198112 | 1.719453 | 14.2511145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0037800 | RBH | 0.0 | 0.0 | 0.111118 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0601000 | RBH | 1.042177 | 0.8297515 | 19.801263 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0038090 | RBH | 0.0 | 0.040503 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0038030 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0038130 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0038150 | RBH | 0.0 | 0.144293 | 0.070036 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0037800 | RBH | 0.0 | 0.843728 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G038460 | RBH | 0.0 | 0.0 | 0.107953 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0038320 | RBH | 0.0 | 1.099603 | 0.218336 |
