Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0036380 | OGI:02094260 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:33747145-33753233 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tccaatggcggcggcgatggccctcgcgtcgcgctcgcgctcccgcgagtgacatgatccccccccccctagccatctctgggggagaatatccgcgcgcgcccgcccgaatcaaccttcctcctccctccctcctcctctccctgcctcccctccttcaggcggtttcccacctccgccgccgccccgaagctattggttgctcgctttgcttgagcgccagatcgccggataggtacgcagtaacgccgcagcagcatccttctatgtctatccctcgatttatttgctgtgtgctgattttgtcctcctctctttttttttcttggggggtgtggggaattgatttttgtttgtttgtttgtttcttctgttcgttcttatccttttttatcgccctatttctgcgggagaaaaaaggggagccttttcttttctgcgggctgaacggcgccagatattcatcgggggtggaatcggttgcgatcttttgttccccttgtgctcgaggggaatttagccggagctggggttcctttcatttgccacggtgttgcaatcatcgaaatgttttcttgactgtgcttgcattcagcttgtctcaagattttttgttttggggatttatatcaggtatttgtgggcagagttttttttttcagcctttgcattgtttggtgttcatcttttgtggatcgaagtgcgatctttcactctgatctgaggtaatcagacaaaaaagagagaaatttgttggttatgttggaattcaatgagtgtttgttgtgtatccttctgataaaagatggagatttttttttcttgaatgtgttcataatcttttttttaaaatttttttgttcttcaggaagagactaatcggcgcaaaaaaaaaaagtgaataccaactgtttgatttgaatcgtgtgatgtacttcacccaaatcaccccaacttggtagcatttctcccagtctccgcacgcatggcgcccgctgctgcccctgccagcgtctctgcaggcagcgccgaggctgatggagcccctcgcatggccaagttcctctgcagctttggaggaagcatcctgccccgcccacttgatgggcgtctgcgttacgtcggcggcgagaccaggattgttatgctgccgcgtgatgtatcctacactgacctagcagcgcggatgcgtgagctctatgaggatgctgatatcatcaagtaccagcaacctgatgaggatctagatgccctggtctcggttgttaacgatgacgatgtggtgaacatgatggaggagtacgacaagctcattgctgcaggagaggggtttactcggttgaggattttcttgttctcacagcacttagacgatgaggccgcagcagcggctgtccattacaatggagatgagagagagacagagaggaggtatgttgatgcacttaatagcctcggcgatgttagaacaccttcctctcctgtatccgtggagcagctctttggtattggaggcaacgagtctggaattcctgatattgctggtctgcggcatttgaatgttcctcgcccttcacatagccaaaggtatggggagatggattctccttggagccctgcatatatctctccagggcactatggagtgcatgatcctcgagattttcccatttcaccaaggtttcaagttggagcagaagattttgatgagaggattcctgatgactttgtaaggcattcgccaaaatatcggcattatgaggttcattcaccacagcatgtggataatttggtctggcttcctccaggcgctgtaattcagcaaaacgcaggcttcccaggtaacttgggtcgccctggcaatttcttggatggaagcagtatgtatgatcactgccgttcaccattccataagggtcaaggtgatcctcgatatgtggatcctcgttggaggcctattcaacattttgaccaaacgagcatgacaaatgagtattctggtcaccctactaattcatgtccagattgcaaccgccctggtgagcgttttgtattaaaccaagatgttagactggaaaatggtgtttatgtcaaagagcagactggtggtcaccctcctcccatgttttataacgaatcgcattctcatgatagagcttggcatgcacatgcaaaccaaagccatcagcgatatgaagatccaaggttgcatatgcctggtagtgctagagcgatggaaccatacattgttgacaacagctcagttacatctctcagtcgatctagccatgaaagtccgcactattttcatggcagtagtgagcatgtcagtgatacatatcataaccaacaagttggagtcggtgggccatatgtccagacaccaggatttgaagaatctacaggtcagcattatagccactcttcaacatatggtgcagaccccttttaccaaatgcagcagaatctgccaccacttcaatctttgaggagaagagcaaatagtcctgtccatacaggttcaccctatgaatcaccacacctgccaattccaaatggcaactttgtcagaaatacaggtgatgttagtccacggattccaggtatgcctgcatatgatagaatcccaaacccatggccctcacccaatggaagcataccatatcgagttgttggacatgatatccctgctgttgtagaaaaccggtcaaatccaaacagtggccagtatgttcagcctttatttgcccctgaatcagtccaaaatcaaccaggagctccactgatggagattcatcctgaaagagcatgcggtggatctgttctatcatcacaagttgatggcagagtagctgcattacccctcactgatcagttgtccaggatggatatcaatccattgaagaaacttgaaggtccagagcatgagaagtttacccgaaatgcgaatgaaacaacttctttgcatgctatgaatgatccaagtgccttgacccaccatatcggagttgtacctgaagttgatcccaaacagaggaagcctgtcgaatatgaaactgtcacaagtaaagtgcatgaaggaggggctacagcactgcaggaatgtggggatatttcagaggatagattgaatttccttccagagctggctgcatctgttaagaaggctgcattagaagattctgaagagaaagaaaaggctcaacaagatgctggtcccactcttttgccgacttgtgatgaggaaggcaatggaaagaagttggaggagacacctgctggtgtaagtaatacttgacctttacacattactggcttagctacctagtgctcttaactaaaatcctttttatgtgcagaatactggtacagatcaggattctgatgtgcatggaagtggtgagcagcagaaaagttctggaattgaggctacaaccgctgaagcagaagctttatcaaaaggactacaggtgttttttctgatctcttgatatgtagtattgtttttaattcaacattgtatcccgcttatatgctctgtttggatcatgcagactataaaaaatgatgacttggaggaaattagggagctaggttcaggtacttatggtgcagtttaccatggtaaatggagaggatgtgatgttgctattaaaaggataaaggctagctgttttgctggcagaccatctgagagagagcgtttggtatgcttgattgacttgttaacaccttagaacttttaggattgatttcatagctttttttttccttgttaaagatttctgttaaaaccctctggatagtgattttcttgcttttgtgtattctatggagaagatctctagttcagatatatatgtggttttgcagattgctgatttctggaaagaagctcagattctaagttcacttcatcatccaaatgtggtttcattttatggtgtagttcgtgacggtcctgatggaagcttagcaactgttactgagtttatgatcaatggatctctcaaacagtttttgagaaaaaaagacaggtattacttgtttaatcaaagaacactatgattcttttattctcaaatatccaaattctaaattaaagcaactgcacaggacaattgatcgccgtaaaagagttatattagccatggatgctgcatttggcatggaatatttgcatgggaagaatatagttcattttgatctaaagtgtgagaacctactggtcaacatgagggatccacaacgaccaatctgcaaagtttgatccctgccctctcatcttcatttcctcagctcttgcttcaaatggttgttacctgactgtcatcccacctccattttctgctcagattggtgatcttggactatcaaaggtgaagcagcacactttggtgtctggcggtgttagaggaaccttaccatggatggcaccagagcttctgagtgggaaaagcaatatggtgtcagagaaggtaagaacactggctttataaattataagcacccttatggatcataagtcattaaaactaatgttcttcattttttatattccaactgaaactgatatggcgcttacttgtagattgatgtatactcgtttggtattgtgatgtgggagctgcttactggcgaagaaccatattctgatatgcgtgctgctgctattattggtaattttcaaaatttccactagtaagctttatcaattatcacagtgacttgtttcctgattgcgaattccatcatgtccacccttcatgtttagcgcatgccatttggtgttctgcagaagatccattcctttcacaaatgctttttggaaacaattttgaaaggcttgtgtaggctgaactatcggaaatgggtcagatatgtgttgaagttatgggtgcctatactaattatcaaatactgaagttaaaaacatgttagcgtaggtaactgggttaaatttgcatacatcgtggtgctcaacttggatgtggtagttgccgtctagcagatgagatatccatgttctttaggtgcaggtgtatttttatatttcttcccccttctaatttcttttataggacgactctgtttcatttgagtcgtgaaattgaggaggtcaacgaaagaaaataagtgccaggatatattcttatgtagtctcatatttagtatagataattgcaaagagggactgcttatatatatccagacgctagtgatgctattgtaattgatcaactattcttgtttgtcactaaagtgatcacttatcatatttattccagggggcatcgtgaacaattccctacgtcctcagatcccctcatggtgtgatcctgaatggaaatcactgatggaaaactgttgggccagtgaaccagcagatagaccatccttcacagaaatatctcaaaggttgaggaagatggctgcagcaatgaatgtgaagtaaaggttcacaagccatgcaaagtttcctacgtccagttcccttgatacaggaggaaggcaaactcagaacaagattctatggagtaactatgatatggatgtctttgcagcattccagtttatcctagttcaattgttaatctaatgagttacacggaggaaaaaaatttcatcacggaagttccagagcaagtttaatgtgagttgatggttttcccttgttttattggtccctctgataaaaatccagagatgattttggtgctgaagtttccatttcttgatgcagggattttcgatcctggaatcatcagctgtcgtttgccttcctcggggaacagtatgctatataccttatcctctggacgggaactatagaaatagaaatgtaatgtaaataagcttcggcttgcttcttccggctggcacatgttagatgtgcacagtagtagacactgttcaaagttggacacagttatctttttgcacaaaattgtgtcctaaggaaagaggggacaactcgaacagagatatccttattcagattgtaaatagctcacgaataagatttctatgtcacttgcaacatggttcttccctgtatagatcatcagtggcactattcctcctgggtc
More
|
||||||||||
| CDS seq | atggcgcccgctgctgcccctgccagcgtctctgcaggcagcgccgaggctgatggagcccctcgcatggccaagttcctctgcagctttggaggaagcatcctgccccgcccacttgatgggcgtctgcgttacgtcggcggcgagaccaggattgttatgctgccgcgtgatgtatcctacactgacctagcagcgcggatgcgtgagctctatgaggatgctgatatcatcaagtaccagcaacctgatgaggatctagatgccctggtctcggttgttaacgatgacgatgtggtgaacatgatggaggagtacgacaagctcattgctgcaggagaggggtttactcggttgaggattttcttgttctcacagcacttagacgatgaggccgcagcagcggctgtccattacaatggagatgagagagagacagagaggaggtatgttgatgcacttaatagcctcggcgatgttagaacaccttcctctcctgtatccgtggagcagctctttggtattggaggcaacgagtctggaattcctgatattgctggtctgcggcatttgaatgttcctcgcccttcacatagccaaaggtatggggagatggattctccttggagccctgcatatatctctccagggcactatggagtgcatgatcctcgagattttcccatttcaccaaggtttcaagttggagcagaagattttgatgagaggattcctgatgactttgtaaggcattcgccaaaatatcggcattatgaggttcattcaccacagcatgtggataatttggtctggcttcctccaggcgctgtaattcagcaaaacgcaggcttcccaggtaacttgggtcgccctggcaatttcttggatggaagcagtatgtatgatcactgccgttcaccattccataagggtcaaggtgatcctcgatatgtggatcctcgttggaggcctattcaacattttgaccaaacgagcatgacaaatgagtattctggtcaccctactaattcatgtccagattgcaaccgccctggtgagcgttttgtattaaaccaagatgttagactggaaaatggtgtttatgtcaaagagcagactggtggtcaccctcctcccatgttttataacgaatcgcattctcatgatagagcttggcatgcacatgcaaaccaaagccatcagcgatatgaagatccaaggttgcatatgcctggtagtgctagagcgatggaaccatacattgttgacaacagctcagttacatctctcagtcgatctagccatgaaagtccgcactattttcatggcagtagtgagcatgtcagtgatacatatcataaccaacaagttggagtcggtgggccatatgtccagacaccaggatttgaagaatctacaggtcagcattatagccactcttcaacatatggtgcagaccccttttaccaaatgcagcagaatctgccaccacttcaatctttgaggagaagagcaaatagtcctgtccatacaggttcaccctatgaatcaccacacctgccaattccaaatggcaactttgtcagaaatacaggtgatgttagtccacggattccaggtatgcctgcatatgatagaatcccaaacccatggccctcacccaatggaagcataccatatcgagttgttggacatgatatccctgctgttgtagaaaaccggtcaaatccaaacagtggccagtatgttcagcctttatttgcccctgaatcagtccaaaatcaaccaggagctccactgatggagattcatcctgaaagagcatgcggtggatctgttctatcatcacaagttgatggcagagtagctgcattacccctcactgatcagttgtccaggatggatatcaatccattgaagaaacttgaaggtccagagcatgagaagtttacccgaaatgcgaatgaaacaacttctttgcatgctatgaatgatccaagtgccttgacccaccatatcggagttgtacctgaagttgatcccaaacagaggaagcctgtcgaatatgaaactgtcacaagtaaagtgcatgaaggaggggctacagcactgcaggaatgtggggatatttcagaggatagattgaatttccttccagagctggctgcatctgttaagaaggctgcattagaagattctgaagagaaagaaaaggctcaacaagatgctggtcccactcttttgccgacttgtgatgaggaaggcaatggaaagaagttggaggagacacctgctggtaatactggtacagatcaggattctgatgtgcatggaagtggtgagcagcagaaaagttctggaattgaggctacaaccgctgaagcagaagctttatcaaaaggactacagactataaaaaatgatgacttggaggaaattagggagctaggttcaggtacttatggtgcagtttaccatggtaaatggagaggatgtgatgttgctattaaaaggataaaggctagctgttttgctggcagaccatctgagagagagcgtttgattgctgatttctggaaagaagctcagattctaagttcacttcatcatccaaatgtggtttcattttatggtgtagttcgtgacggtcctgatggaagcttagcaactgttactgagtttatgatcaatggatctctcaaacagtttttgagaaaaaaagacaggacaattgatcgccgtaaaagagttatattagccatggatgctgcatttggcatggaatatttgcatgggaagaatatagttcattttgatctaaagtgtgagaacctactggtcaacatgagggatccacaacgaccaatctgcaaaattggtgatcttggactatcaaaggtgaagcagcacactttggtgtctggcggtgttagaggaaccttaccatggatggcaccagagcttctgagtgggaaaagcaatatggtgtcagagaagattgatgtatactcgtttggtattgtgatgtgggagctgcttactggcgaagaaccatattctgatatgcgtgctgctgctattattgggggcatcgtgaacaattccctacgtcctcagatcccctcatggtgtgatcctgaatggaaatcactgatggaaaactgttgggccagtgaaccagcagatagaccatccttcacagaaatatctcaaaggttgaggaagatggctgcagcaatgaatgtgaagtaa
More
|
||||||||||
| Protein seq | MAPAAAPASVSAGSAEADGAPRMAKFLCSFGGSILPRPLDGRLRYVGGETRIVMLPRDVSYTDLAARMRELYEDADIIKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLIAAGEGFTRLRIFLFSQHLDDEAAAAAVHYNGDERETERRYVDALNSLGDVRTPSSPVSVEQLFGIGGNESGIPDIAGLRHLNVPRPSHSQRYGEMDSPWSPAYISPGHYGVHDPRDFPISPRFQVGAEDFDERIPDDFVRHSPKYRHYEVHSPQHVDNLVWLPPGAVIQQNAGFPGNLGRPGNFLDGSSMYDHCRSPFHKGQGDPRYVDPRWRPIQHFDQTSMTNEYSGHPTNSCPDCNRPGERFVLNQDVRLENGVYVKEQTGGHPPPMFYNESHSHDRAWHAHANQSHQRYEDPRLHMPGSARAMEPYIVDNSSVTSLSRSSHESPHYFHGSSEHVSDTYHNQQVGVGGPYVQTPGFEESTGQHYSHSSTYGADPFYQMQQNLPPLQSLRRRANSPVHTGSPYESPHLPIPNGNFVRNTGDVSPRIPGMPAYDRIPNPWPSPNGSIPYRVVGHDIPAVVENRSNPNSGQYVQPLFAPESVQNQPGAPLMEIHPERACGGSVLSSQVDGRVAALPLTDQLSRMDINPLKKLEGPEHEKFTRNANETTSLHAMNDPSALTHHIGVVPEVDPKQRKPVEYETVTSKVHEGGATALQECGDISEDRLNFLPELAASVKKAALEDSEEKEKAQQDAGPTLLPTCDEEGNGKKLEETPAGNTGTDQDSDVHGSGEQQKSSGIEATTAEAEALSKGLQTIKNDDLEEIRELGSGTYGAVYHGKWRGCDVAIKRIKASCFAGRPSERERLIADFWKEAQILSSLHHPNVVSFYGVVRDGPDGSLATVTEFMINGSLKQFLRKKDRTIDRRKRVILAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPICKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGEEPYSDMRAAAIIGGIVNNSLRPQIPSWCDPEWKSLMENCWASEPADRPSFTEISQRLRKMAAAMNVK |
||||||||||
| Function | Probable serine/threonine-protein kinase SIS8 [UniProtKB/Swiss-Prot:Q9C9U5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0036380 | OsKeNa_02g0036380.02 | Chr02 | 33748130 | 33753233 | + | NAM | ||
| CDS seq | atggcgcccgctgctgcccctgccagcgtctctgcaggcagcgccgaggctgatggagcccctcgcatggccaagttcctctgcagctttggaggaagcatcctgccccgcccacttgatgggcgtctgcgttacgtcggcggcgagaccaggattgttatgctgccgcgtgatgtatcctacactgacctagcagcgcggatgcgtgagctctatgaggatgctgatatcatcaagtaccagcaacctgatgaggatctagatgccctggtctcggttgttaacgatgacgatgtggtgaacatgatggaggagtacgacaagctcattgctgcaggagaggggtttactcggttgaggattttcttgttctcacagcacttagacgatgaggccgcagcagcggctgtccattacaatggagatgagagagagacagagaggaggtatgttgatgcacttaatagcctcggcgatgttagaacaccttcctctcctgtatccgtggagcagctctttggtattggaggcaacgagtctggaattcctgatattgctggtctgcggcatttgaatgttcctcgcccttcacatagccaaaggtatggggagatggattctccttggagccctgcatatatctctccagggcactatggagtgcatgatcctcgagattttcccatttcaccaaggtttcaagttggagcagaagattttgatgagaggattcctgatgactttgtaaggcattcgccaaaatatcggcattatgaggttcattcaccacagcatgtggataatttggtctggcttcctccaggcgctgtaattcagcaaaacgcaggcttcccaggtaacttgggtcgccctggcaatttcttggatggaagcagtatgtatgatcactgccgttcaccattccataagggtcaaggtgatcctcgatatgtggatcctcgttggaggcctattcaacattttgaccaaacgagcatgacaaatgagtattctggtcaccctactaattcatgtccagattgcaaccgccctggtgagcgttttgtattaaaccaagatgttagactggaaaatggtgtttatgtcaaagagcagactggtggtcaccctcctcccatgttttataacgaatcgcattctcatgatagagcttggcatgcacatgcaaaccaaagccatcagcgatatgaagatccaaggttgcatatgcctggtagtgctagagcgatggaaccatacattgttgacaacagctcagttacatctctcagtcgatctagccatgaaagtccgcactattttcatggcagtagtgagcatgtcagtgatacatatcataaccaacaagttggagtcggtgggccatatgtccagacaccaggatttgaagaatctacaggtcagcattatagccactcttcaacatatggtgcagaccccttttaccaaatgcagcagaatctgccaccacttcaatctttgaggagaagagcaaatagtcctgtccatacaggttcaccctatgaatcaccacacctgccaattccaaatggcaactttgtcagaaatacaggtgatgttagtccacggattccaggtatgcctgcatatgatagaatcccaaacccatggccctcacccaatggaagcataccatatcgagttgttggacatgatatccctgctgttgtagaaaaccggtcaaatccaaacagtggccagtatgttcagcctttatttgcccctgaatcagtccaaaatcaaccaggagctccactgatggagattcatcctgaaagagcatgcggtggatctgttctatcatcacaagttgatggcagagtagctgcattacccctcactgatcagttgtccaggatggatatcaatccattgaagaaacttgaaggtccagagcatgagaagtttacccgaaatgcgaatgaaacaacttctttgcatgctatgaatgatccaagtgccttgacccaccatatcggagttgtacctgaagttgatcccaaacagaggaagcctgtcgaatatgaaactgtcacaagtaaagtgcatgaaggaggggctacagcactgcaggaatgtggggatatttcagaggatagattgaatttccttccagagctggctgcatctgttaagaaggctgcattagaagattctgaagagaaagaaaaggctcaacaagatgctggtcccactcttttgccgacttgtgatgaggaaggcaatggaaagaagttggaggagacacctgctggtaatactggtacagatcaggattctgatgtgcatggaagtggtgagcagcagaaaagttctggaattgaggctacaaccgctgaagcagaagctttatcaaaaggactacagactataaaaaatgatgacttggaggaaattagggagctaggttcaggtacttatggtgcagtttaccatgggggcatcgtgaacaattccctacgtcctcagatcccctcatggtgtgatcctgaatggaaatcactgatggaaaactgttgggccagtgaaccagcagatagaccatccttcacagaaatatctcaaaggttgaggaagatggctgcagcaatgaatgtgaagtaa
More
|
|||||||
| Protein seq | MAPAAAPASVSAGSAEADGAPRMAKFLCSFGGSILPRPLDGRLRYVGGETRIVMLPRDVSYTDLAARMRELYEDADIIKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLIAAGEGFTRLRIFLFSQHLDDEAAAAAVHYNGDERETERRYVDALNSLGDVRTPSSPVSVEQLFGIGGNESGIPDIAGLRHLNVPRPSHSQRYGEMDSPWSPAYISPGHYGVHDPRDFPISPRFQVGAEDFDERIPDDFVRHSPKYRHYEVHSPQHVDNLVWLPPGAVIQQNAGFPGNLGRPGNFLDGSSMYDHCRSPFHKGQGDPRYVDPRWRPIQHFDQTSMTNEYSGHPTNSCPDCNRPGERFVLNQDVRLENGVYVKEQTGGHPPPMFYNESHSHDRAWHAHANQSHQRYEDPRLHMPGSARAMEPYIVDNSSVTSLSRSSHESPHYFHGSSEHVSDTYHNQQVGVGGPYVQTPGFEESTGQHYSHSSTYGADPFYQMQQNLPPLQSLRRRANSPVHTGSPYESPHLPIPNGNFVRNTGDVSPRIPGMPAYDRIPNPWPSPNGSIPYRVVGHDIPAVVENRSNPNSGQYVQPLFAPESVQNQPGAPLMEIHPERACGGSVLSSQVDGRVAALPLTDQLSRMDINPLKKLEGPEHEKFTRNANETTSLHAMNDPSALTHHIGVVPEVDPKQRKPVEYETVTSKVHEGGATALQECGDISEDRLNFLPELAASVKKAALEDSEEKEKAQQDAGPTLLPTCDEEGNGKKLEETPAGNTGTDQDSDVHGSGEQQKSSGIEATTAEAEALSKGLQTIKNDDLEEIRELGSGTYGAVYHGGIVNNSLRPQIPSWCDPEWKSLMENCWASEPADRPSFTEISQRLRKMAAAMNVK
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0036380 | OsKeNa_02g0036380.01 | Chr02 | 33748130 | 33753233 | + | NAM | ||
| CDS seq | atggcgcccgctgctgcccctgccagcgtctctgcaggcagcgccgaggctgatggagcccctcgcatggccaagttcctctgcagctttggaggaagcatcctgccccgcccacttgatgggcgtctgcgttacgtcggcggcgagaccaggattgttatgctgccgcgtgatgtatcctacactgacctagcagcgcggatgcgtgagctctatgaggatgctgatatcatcaagtaccagcaacctgatgaggatctagatgccctggtctcggttgttaacgatgacgatgtggtgaacatgatggaggagtacgacaagctcattgctgcaggagaggggtttactcggttgaggattttcttgttctcacagcacttagacgatgaggccgcagcagcggctgtccattacaatggagatgagagagagacagagaggaggtatgttgatgcacttaatagcctcggcgatgttagaacaccttcctctcctgtatccgtggagcagctctttggtattggaggcaacgagtctggaattcctgatattgctggtctgcggcatttgaatgttcctcgcccttcacatagccaaaggtatggggagatggattctccttggagccctgcatatatctctccagggcactatggagtgcatgatcctcgagattttcccatttcaccaaggtttcaagttggagcagaagattttgatgagaggattcctgatgactttgtaaggcattcgccaaaatatcggcattatgaggttcattcaccacagcatgtggataatttggtctggcttcctccaggcgctgtaattcagcaaaacgcaggcttcccaggtaacttgggtcgccctggcaatttcttggatggaagcagtatgtatgatcactgccgttcaccattccataagggtcaaggtgatcctcgatatgtggatcctcgttggaggcctattcaacattttgaccaaacgagcatgacaaatgagtattctggtcaccctactaattcatgtccagattgcaaccgccctggtgagcgttttgtattaaaccaagatgttagactggaaaatggtgtttatgtcaaagagcagactggtggtcaccctcctcccatgttttataacgaatcgcattctcatgatagagcttggcatgcacatgcaaaccaaagccatcagcgatatgaagatccaaggttgcatatgcctggtagtgctagagcgatggaaccatacattgttgacaacagctcagttacatctctcagtcgatctagccatgaaagtccgcactattttcatggcagtagtgagcatgtcagtgatacatatcataaccaacaagttggagtcggtgggccatatgtccagacaccaggatttgaagaatctacaggtcagcattatagccactcttcaacatatggtgcagaccccttttaccaaatgcagcagaatctgccaccacttcaatctttgaggagaagagcaaatagtcctgtccatacaggttcaccctatgaatcaccacacctgccaattccaaatggcaactttgtcagaaatacaggtgatgttagtccacggattccaggtatgcctgcatatgatagaatcccaaacccatggccctcacccaatggaagcataccatatcgagttgttggacatgatatccctgctgttgtagaaaaccggtcaaatccaaacagtggccagtatgttcagcctttatttgcccctgaatcagtccaaaatcaaccaggagctccactgatggagattcatcctgaaagagcatgcggtggatctgttctatcatcacaagttgatggcagagtagctgcattacccctcactgatcagttgtccaggatggatatcaatccattgaagaaacttgaaggtccagagcatgagaagtttacccgaaatgcgaatgaaacaacttctttgcatgctatgaatgatccaagtgccttgacccaccatatcggagttgtacctgaagttgatcccaaacagaggaagcctgtcgaatatgaaactgtcacaagtaaagtgcatgaaggaggggctacagcactgcaggaatgtggggatatttcagaggatagattgaatttccttccagagctggctgcatctgttaagaaggctgcattagaagattctgaagagaaagaaaaggctcaacaagatgctggtcccactcttttgccgacttgtgatgaggaaggcaatggaaagaagttggaggagacacctgctggtaatactggtacagatcaggattctgatgtgcatggaagtggtgagcagcagaaaagttctggaattgaggctacaaccgctgaagcagaagctttatcaaaaggactacagactataaaaaatgatgacttggaggaaattagggagctaggttcaggtacttatggtgcagtttaccatggtaaatggagaggatgtgatgttgctattaaaaggataaaggctagctgttttgctggcagaccatctgagagagagcgtttgattgctgatttctggaaagaagctcagattctaagttcacttcatcatccaaatgtggtttcattttatggtgtagttcgtgacggtcctgatggaagcttagcaactgttactgagtttatgatcaatggatctctcaaacagtttttgagaaaaaaagacaggacaattgatcgccgtaaaagagttatattagccatggatgctgcatttggcatggaatatttgcatgggaagaatatagttcattttgatctaaagtgtgagaacctactggtcaacatgagggatccacaacgaccaatctgcaaaattggtgatcttggactatcaaaggtgaagcagcacactttggtgtctggcggtgttagaggaaccttaccatggatggcaccagagcttctgagtgggaaaagcaatatggtgtcagagaagattgatgtatactcgtttggtattgtgatgtgggagctgcttactggcgaagaaccatattctgatatgcgtgctgctgctattattgggggcatcgtgaacaattccctacgtcctcagatcccctcatggtgtgatcctgaatggaaatcactgatggaaaactgttgggccagtgaaccagcagatagaccatccttcacagaaatatctcaaaggttgaggaagatggctgcagcaatgaatgtgaagtaa
More
|
|||||||
| Protein seq | MAPAAAPASVSAGSAEADGAPRMAKFLCSFGGSILPRPLDGRLRYVGGETRIVMLPRDVSYTDLAARMRELYEDADIIKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLIAAGEGFTRLRIFLFSQHLDDEAAAAAVHYNGDERETERRYVDALNSLGDVRTPSSPVSVEQLFGIGGNESGIPDIAGLRHLNVPRPSHSQRYGEMDSPWSPAYISPGHYGVHDPRDFPISPRFQVGAEDFDERIPDDFVRHSPKYRHYEVHSPQHVDNLVWLPPGAVIQQNAGFPGNLGRPGNFLDGSSMYDHCRSPFHKGQGDPRYVDPRWRPIQHFDQTSMTNEYSGHPTNSCPDCNRPGERFVLNQDVRLENGVYVKEQTGGHPPPMFYNESHSHDRAWHAHANQSHQRYEDPRLHMPGSARAMEPYIVDNSSVTSLSRSSHESPHYFHGSSEHVSDTYHNQQVGVGGPYVQTPGFEESTGQHYSHSSTYGADPFYQMQQNLPPLQSLRRRANSPVHTGSPYESPHLPIPNGNFVRNTGDVSPRIPGMPAYDRIPNPWPSPNGSIPYRVVGHDIPAVVENRSNPNSGQYVQPLFAPESVQNQPGAPLMEIHPERACGGSVLSSQVDGRVAALPLTDQLSRMDINPLKKLEGPEHEKFTRNANETTSLHAMNDPSALTHHIGVVPEVDPKQRKPVEYETVTSKVHEGGATALQECGDISEDRLNFLPELAASVKKAALEDSEEKEKAQQDAGPTLLPTCDEEGNGKKLEETPAGNTGTDQDSDVHGSGEQQKSSGIEATTAEAEALSKGLQTIKNDDLEEIRELGSGTYGAVYHGKWRGCDVAIKRIKASCFAGRPSERERLIADFWKEAQILSSLHHPNVVSFYGVVRDGPDGSLATVTEFMINGSLKQFLRKKDRTIDRRKRVILAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPICKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGEEPYSDMRAAAIIGGIVNNSLRPQIPSWCDPEWKSLMENCWASEPADRPSFTEISQRLRKMAAAMNVK
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0036380 | OsKeNa_02g0036380.03 | Chr02 | 33747145 | 33753182 | + | IsoSeq | ||
| CDS seq | atgttagactggaaaatggtgtttatgtcaaagagcagactggtggtcaccctcctcccatgttttataacgaatcgcattctcatgatagagcttggcatgcacatgcaaaccaaagccatcagcgatatgaagatccaaggttgcatatgcctggtagtgctagagcgatggaaccatacattgttgacaacagctcagttacatctctcagtcgatctagccatgaaagtccgcactattttcatggcagtagtgagcatgtcagtgatacatatcataaccaacaagttggagtcggtgggccatatgtccagacaccaggatttgaagaatctacaggtcagcattatagccactcttcaacatatggtgcagaccccttttaccaaatgcagcagaatctgccaccacttcaat
More
|
|||||||
| Protein seq | MLDWKMVFMSKSRLVVTLLPCFITNRILMIELGMHMQTKAISDMKIQGCICLVVLERWNHTLLTTAQLHLSVDLAMKVRTIFMAVVSMSVIHIITNKLESVGHMSRHQDLKNLQVSIIATLQHMVQTPFTKCSRICHHFN |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.612227 | 2.544813 | 6.372208 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0786200 | RBH | 5.868653 | 5.563925 | 6.098669 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g54510 | RBH | 3.723419 | 3.492442 | 1.498880 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0786200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0036280 | RBH | 2.547636 | 9.879221 | 12.080933 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0005580 | RBH | 0.118292 | 1.838086 | 2.005394 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0036220 | RBH | 3.467088 | 7.800554 | 18.577242 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0035810 | RBH | 0.829830 | 0.348060 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0036000 | RBH | 38.785515 | 11.069494 | 24.146795 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0546100 | RBH | 11.64289 | 23.582507 | 34.681238 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0035820 | RBH | 1.212481 | 0.510227 | 3.509228 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0576800 | RBH | 13.308981 | 23.6881935 | 19.006779 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0036080 | RBH | 1.317946 | 0.165748 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0035900 | RBH | 2.740890 | 7.170314 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0036140 | RBH | 46.006603 | 7.623847 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0036100 | RBH | 2.679500 | 1.350305 | 2.316666 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0035710 | RBH | 0.954511 | 4.790346 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G036350 | RBH | 2.291586 | 3.264194 | 3.912000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0036090 | RBH | 6.479235 | 20.341587 | 9.720057 |
