Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0034520 | OGI:02090450 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:32335295-32337919 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggatcagctatccaattttgatgggccattcggacggcccagtcatcggtccgttggccacgcgatttctcaggcgcacctccgccgcaacgcgagtccccccaccgccgccggccgcggcgcgccgccgttctgacgctccacggccacatgaactgccgccacctcgccctccggctccgccacctccgccgccttctcgcggtcgcacccctttcctcgctcgcggccgcgcactccgctaaccgctcctccccacggctaaaccccacttcggtgccgccaccgccgcggcagctgcatctcccgaccctccaggctcgacggctctgctccaccacgcacgtcgtcctccccacaaacctccaggacgagcggttcgcggctctctcggataggatctacgacgccgtgattgagaccgcggcgggttccagcgagggcacggaggcggcccttgacgcgctgggcgccgagctgaccaccccgctcgtcgccgacgtgctgcatcgcctccgttacgacgagaagctggccttccggttcttcgtctgggcgtctcaccaggacggctacgagcacgaggccgcgacgtacaacgacgtcatcgacatcctctccggcacgcggtacaaggcccgccagttcggcgtcctctgcgacgtgctcgaccacatgaagcgccgccgcacaaggtccgtgccggtcgacgacttgctgggtatcctgcgcgcatacacggagaagcacctcacgcatctcaggaagctggctaagaagcggcgggtgcggatgcgcacgccgccggagaccgacgctctgaacgtgctgctggacgccttctgcaagtgcgggatggtccgggaggcggaggtggtgttcagccgcgtgaagaggaagctgctggggaatgccgagacatacagtatcctgttcttcgggtggtgccgggcaagggaccccaagagggccatgaaggtgctcgaggaaatgattcagatgaagcacacccctgagaacttcacttacaatgctgccattgactcattttgcagtgctggtttggtctcagaggcaagggatttgtttgagttcatgagaacagaggggtctacaatttcatcgcccacggctaagacatactcgattatgattgcggcgctagcaaaggctggtcagatggaggagtgctttgaactgatttcagaaatgagaaagtgcggctgtatgcctgatgtgtcgacatataaagacttgattgaaggcatgttgttggtggataaactggatgctgcttattgtgttttagatgagatggcaaaggctggctttccccctgacattgtcacttacaattgctttctgaaggtgctttgtggtcttcaaaaggctgatgacgcgcttgaactctgtgaaaggatgatagaggcgcattgtgagcctagtgttcatacatataatatgctgatggtgatgttctttgagatgagagagccagatagggcaatcaatatttggatcgagatggacaagagaggatgccatcgcgctgttgatacctacgaaacaatgattgatgggctgtttgattctggaagaacggaagatgcgaccgctcttctagatgaggtaataaaccgtggcatgaaactttcgtacaagaagtttgatgctatcatgttgcggctatcagctgtaggcaaccttggcgcgatacatcggttgtcagagcatatgaggagattttacaatgttgcaatgtctaggcgttttgcaatcacacagaagaagaagagcataggtctgagaaggaaatgaatatttcgagatttcttgttagtgcagatgatcaggagtttatatgaggttagctaattattggtttattattgcagcaattggttgtcacttgcaaatgtattaaaatatttcctgggtcctatataggttcagtgttattttaccaatttgtctaggagtaagttgcatctgtgaaatgctttgactgctggttgcatacttgaatagaaacttgcatgtagctaatagcaacacaacatcactcttatgtaccttcaacatagaaaagcacaattagttacatttttggtagctccaacactttgcagtgtgtttgtttcgtgcaatcagcataataatggctaaattggcgaagcaaacaaaaatatttcaatcaattgttcttatcttacctgcatttcctggtagcatttgtttggcaagtggcaaccctcacatgtagaccttatgatttccttagttctgcaggaaggatatgatcccagtttcaccatgaaaaatcgtctctgatagccgtggaaatcaaactaatacatagcttttcaatcattatgggaagcaacctcaaagtgaattcgtaacaaaaaggatatccaaccaccccaaacatcagttcactgcctgtcagagatgccatcagcttaatgtacatttcatttatgacctaacctgtttaatgataagtatgcagctgatccaatgtagtgattttcctttttgtttcccactcattattggtctctgataaaacacatgtgatgccatttatttgttatagatatcacagaaagagtgttgattagc
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| CDS seq | atgaactgccgccacctcgccctccggctccgccacctccgccgccttctcgcggtcgcacccctttcctcgctcgcggccgcgcactccgctaaccgctcctccccacggctaaaccccacttcggtgccgccaccgccgcggcagctgcatctcccgaccctccaggctcgacggctctgctccaccacgcacgtcgtcctccccacaaacctccaggacgagcggttcgcggctctctcggataggatctacgacgccgtgattgagaccgcggcgggttccagcgagggcacggaggcggcccttgacgcgctgggcgccgagctgaccaccccgctcgtcgccgacgtgctgcatcgcctccgttacgacgagaagctggccttccggttcttcgtctgggcgtctcaccaggacggctacgagcacgaggccgcgacgtacaacgacgtcatcgacatcctctccggcacgcggtacaaggcccgccagttcggcgtcctctgcgacgtgctcgaccacatgaagcgccgccgcacaaggtccgtgccggtcgacgacttgctgggtatcctgcgcgcatacacggagaagcacctcacgcatctcaggaagctggctaagaagcggcgggtgcggatgcgcacgccgccggagaccgacgctctgaacgtgctgctggacgccttctgcaagtgcgggatggtccgggaggcggaggtggtgttcagccgcgtgaagaggaagctgctggggaatgccgagacatacagtatcctgttcttcgggtggtgccgggcaagggaccccaagagggccatgaaggtgctcgaggaaatgattcagatgaagcacacccctgagaacttcacttacaatgctgccattgactcattttgcagtgctggtttggtctcagaggcaagggatttgtttgagttcatgagaacagaggggtctacaatttcatcgcccacggctaagacatactcgattatgattgcggcgctagcaaaggctggtcagatggaggagtgctttgaactgatttcagaaatgagaaagtgcggctgtatgcctgatgtgtcgacatataaagacttgattgaaggcatgttgttggtggataaactggatgctgcttattgtgttttagatgagatggcaaaggctggctttccccctgacattgtcacttacaattgctttctgaaggtgctttgtggtcttcaaaaggctgatgacgcgcttgaactctgtgaaaggatgatagaggcgcattgtgagcctagtgttcatacatataatatgctgatggtgatgttctttgagatgagagagccagatagggcaatcaatatttggatcgagatggacaagagaggatgccatcgcgctgttgatacctacgaaacaatgattgatgggctgtttgattctggaagaacggaagatgcgaccgctcttctagatgaggtaataaaccgtggcatgaaactttcgtacaagaagtttgatgctatcatgttgcggctatcagctgtaggcaaccttggcgcgatacatcggttgtcagagcatatgaggagattttacaatgttgcaatgtctaggcgttttgcaatcacacagaagaagaagagcataggtctgagaaggaaatga
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| Protein seq | MNCRHLALRLRHLRRLLAVAPLSSLAAAHSANRSSPRLNPTSVPPPPRQLHLPTLQARRLCSTTHVVLPTNLQDERFAALSDRIYDAVIETAAGSSEGTEAALDALGAELTTPLVADVLHRLRYDEKLAFRFFVWASHQDGYEHEAATYNDVIDILSGTRYKARQFGVLCDVLDHMKRRRTRSVPVDDLLGILRAYTEKHLTHLRKLAKKRRVRMRTPPETDALNVLLDAFCKCGMVREAEVVFSRVKRKLLGNAETYSILFFGWCRARDPKRAMKVLEEMIQMKHTPENFTYNAAIDSFCSAGLVSEARDLFEFMRTEGSTISSPTAKTYSIMIAALAKAGQMEECFELISEMRKCGCMPDVSTYKDLIEGMLLVDKLDAAYCVLDEMAKAGFPPDIVTYNCFLKVLCGLQKADDALELCERMIEAHCEPSVHTYNMLMVMFFEMREPDRAINIWIEMDKRGCHRAVDTYETMIDGLFDSGRTEDATALLDEVINRGMKLSYKKFDAIMLRLSAVGNLGAIHRLSEHMRRFYNVAMSRRFAITQKKKSIGLRRK |
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| Function | Pentatricopeptide repeat-containing protein At1g73400, mitochondrial [UniProtKB/Swiss-Prot:Q9FX35] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0034520 | OsKeNa_02g0034520.01 | Chr02 | 32335295 | 32337919 | + | NAM | ||
| CDS seq | atgaactgccgccacctcgccctccggctccgccacctccgccgccttctcgcggtcgcacccctttcctcgctcgcggccgcgcactccgctaaccgctcctccccacggctaaaccccacttcggtgccgccaccgccgcggcagctgcatctcccgaccctccaggctcgacggctctgctccaccacgcacgtcgtcctccccacaaacctccaggacgagcggttcgcggctctctcggataggatctacgacgccgtgattgagaccgcggcgggttccagcgagggcacggaggcggcccttgacgcgctgggcgccgagctgaccaccccgctcgtcgccgacgtgctgcatcgcctccgttacgacgagaagctggccttccggttcttcgtctgggcgtctcaccaggacggctacgagcacgaggccgcgacgtacaacgacgtcatcgacatcctctccggcacgcggtacaaggcccgccagttcggcgtcctctgcgacgtgctcgaccacatgaagcgccgccgcacaaggtccgtgccggtcgacgacttgctgggtatcctgcgcgcatacacggagaagcacctcacgcatctcaggaagctggctaagaagcggcgggtgcggatgcgcacgccgccggagaccgacgctctgaacgtgctgctggacgccttctgcaagtgcgggatggtccgggaggcggaggtggtgttcagccgcgtgaagaggaagctgctggggaatgccgagacatacagtatcctgttcttcgggtggtgccgggcaagggaccccaagagggccatgaaggtgctcgaggaaatgattcagatgaagcacacccctgagaacttcacttacaatgctgccattgactcattttgcagtgctggtttggtctcagaggcaagggatttgtttgagttcatgagaacagaggggtctacaatttcatcgcccacggctaagacatactcgattatgattgcggcgctagcaaaggctggtcagatggaggagtgctttgaactgatttcagaaatgagaaagtgcggctgtatgcctgatgtgtcgacatataaagacttgattgaaggcatgttgttggtggataaactggatgctgcttattgtgttttagatgagatggcaaaggctggctttccccctgacattgtcacttacaattgctttctgaaggtgctttgtggtcttcaaaaggctgatgacgcgcttgaactctgtgaaaggatgatagaggcgcattgtgagcctagtgttcatacatataatatgctgatggtgatgttctttgagatgagagagccagatagggcaatcaatatttggatcgagatggacaagagaggatgccatcgcgctgttgatacctacgaaacaatgattgatgggctgtttgattctggaagaacggaagatgcgaccgctcttctagatgaggtaataaaccgtggcatgaaactttcgtacaagaagtttgatgctatcatgttgcggctatcagctgtaggcaaccttggcgcgatacatcggttgtcagagcatatgaggagattttacaatgttgcaatgtctaggcgttttgcaatcacacagaagaagaagagcataggtctgagaaggaaatga
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| Protein seq | MNCRHLALRLRHLRRLLAVAPLSSLAAAHSANRSSPRLNPTSVPPPPRQLHLPTLQARRLCSTTHVVLPTNLQDERFAALSDRIYDAVIETAAGSSEGTEAALDALGAELTTPLVADVLHRLRYDEKLAFRFFVWASHQDGYEHEAATYNDVIDILSGTRYKARQFGVLCDVLDHMKRRRTRSVPVDDLLGILRAYTEKHLTHLRKLAKKRRVRMRTPPETDALNVLLDAFCKCGMVREAEVVFSRVKRKLLGNAETYSILFFGWCRARDPKRAMKVLEEMIQMKHTPENFTYNAAIDSFCSAGLVSEARDLFEFMRTEGSTISSPTAKTYSIMIAALAKAGQMEECFELISEMRKCGCMPDVSTYKDLIEGMLLVDKLDAAYCVLDEMAKAGFPPDIVTYNCFLKVLCGLQKADDALELCERMIEAHCEPSVHTYNMLMVMFFEMREPDRAINIWIEMDKRGCHRAVDTYETMIDGLFDSGRTEDATALLDEVINRGMKLSYKKFDAIMLRLSAVGNLGAIHRLSEHMRRFYNVAMSRRFAITQKKKSIGLRRK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.073409 | 0.0 | 0.785867 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0759500 | RBH | 0.258921 | 0.466461 | 1.168069 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g52220 | RBH | 0.269055 | 0.223894 | 0.204809 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0759500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0034430 | RBH | 0.216636 | 0.0 | 0.347203 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0008770 | SBH | 0.213044 | 0.000000 | 0.210234 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0034400 | RBH | 0.0 | 0.846509 | 0.252229 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0033990 | RBH | 0.081321 | 0.044942 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0034050 | RBH | 1.593859 | 0.0 | 5.308961 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0523000 | RBH | 1.4443545 | 4.8254775 | 5.166651 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0033870 | RBH | 0.0 | 0.0 | 0.243242 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0552800 | RBH | 11.894053 | 42.9978315 | 1.832948 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0034130 | RBH | 0.061865 | 0.046289 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0033960 | RBH | 0.034743 | 0.544947 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0034240 | RBH | 0.897424 | 4.046220 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0034160 | RBH | 0.209030 | 0.181887 | 0.350215 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0033740 | RBH | 0.0 | 2.113016 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G034440 | RBH | 0.149318 | 0.839219 | 0.743033 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0034160 | RBH | 0.486188 | 1.505929 | 1.830782 |
