Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0030200 | OGI:02081080 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:29100276-29103793 | ||||||||
| Gene Symbol | NPF7.2, OsNPF7.2 | ||||||||||
| DNA seq | atcattagcaggagagccgagcgagagcgtgcgagcagagcaaagcctgggaagggaagcacagaagaagaggggctagcctgctcaacttaaagctctcatttgctgacaagacactgacctcttcggcgaatttcgtatatcgtcatggacgccggagacgccatggagagcggacagcgcgcggcgctcctgcccgaggtaatggccgccgtctctcgaatctcgatctctcttcccgtctctcttcaggccacagtgcaaccatcgaccttgcaacacgtctcagcattggtgcagtttgtcagtttagtttttcaacagtgcgttcacttcatttcctcctcgcgtaccgggtgcccaaaatggcagtgcagcgcgtcaggactcgcgtcaggagacgagggaaaaaaaattgagatcagaagtatgcgccggtacatctatctttgaagaaaacacaatcttggctgagcaatgacgacagcaagaatgcagattttttttatggaagggagcaggtggcttagctcgcagcaacaatatttgaccaaagataagaggatactatgtttctcaaaagacaataaaatacacagataatcataatacacacagataatcataatacacttgatagatacatcaaacatgttgtcactatcagacacgcggtgcccagagaaggttccaagaaccggctaaaattatgaaacgcaagcacacacaccacaactactgtttcgtctacccttcaccaaatccctacgaggagtttaggggctgtttggtttctagggacttattttaagtccctgttacatcggatgtttggacactaatttgaagtattaaatatacattaattacaaaacccattccataaatttggactaattcgcgagacgaatcttttgagtctaattacgccatgactttgacaatgtgatgctacagtaaacttttgataattatggattaactaggctttaaaaaatcgtctcgcggattagctctcatttataaaattagtttttttattagtctatgtttaatactctaaattagcgtccaaacattcgatgtgacatgggctaaaaagttttagccccatctaaacacccccttaggaccctttctctttcttcctcacccgacaatcacaagcactgatgtttgcattacgtcataccatccactacttttcaaacacacaaattaatatgtgtcgattcgtttttttccccttttcttttctgatacgaagatgtgcgtgcaaattcagatattatctccttgcttctgaattctgataatattttgtgctattttgtctcaaattgcagagtcacggaccaaagactgaagatgatagcctgcaagtgccactcctcaaggataagaaacgcggcggcagcaaggcacctgcaatagttctaggtaagcattggcgcatagtaaaatctcgtttatttgcagcagctgcaatgcaatatgcatggaacaatgtgtcagtttgagctagtgctcactggatcgaggccggtgcaaatggtgcagggttcgaatgcctggagagcacggcgttcaatggcatctcgacgaacctggtggtgtacctggagaccgtcctccatggcagcaacctggccagcgcgtccaacgtcacgacgtggtacggcacgagctacctcaccccgatcttcggcgccatcgtcgccgacacgttcctcggcaactacaacaccatcctcatctccctcgccgtctacctcctcgggatgatgctggtcacgttctcggcgttcctgccggccacggcggcgctgtgcgcggcgggcgcgacgtgcggcaccggcgcggccgcggcgcagaccgtcgcgttcgtcgggctgtacctcgtggctgtcgggagcggcggggtgcggtcgtcgctgctgccgttcggcgccgagcagttcgacgacgacagcgcggcggatagggagcgcaaggcggccttcttcagctggttctacctctgcgtcgacttcggcctgatcgtctccggcgtgctcctcgtctggatccagcagaacgtcagctggggcctcggcttcggcatcgccaccgcgtgcatcgcggtcgcgttcgccgcgttcgtgctcgccacgcccatgtacaagcgccggttgccgacgggcacgccgctcaagagcctcgcccaggtcgtcgtcgccgccttcaggaaggtcggcatgaagctccccgccgacgccgagctcctgtacgaggtcagcgacaaggtcgactcccagcccaagatcgcgcacaccagcgagttcacgtttcttgacaaggcggccgtcgtctcggagtcggacctggaggagaggccggaggcggcgagctcgtggaagctctgcaccgtgacgcaggtggaggagctcaagatccttctgcgtctgctccccatctgggcgaccagcatcatcgtgtccgcggcatactcgcagatgagcaccaccttcatccagcaaggcagcgccatggacatgcacatcttctcggtgccggtgccggcggcgtcgttaagctccttccaggttctctgcgtcctgacatgggtgatcctctacagcaaggtgatcgtgccggcgctgaggggcttctcctcctccggagccgccggcgagccgtcgcagctgcagcgcatgggcgccgggcgcctcctcatggcgctcgccatggcggtggccgcgctcgtggagacgaagcggctcaacgccgcggcgagcggcgaggcgatcaacatcgcgtggcagatgccgcagtacttcttcctcgccggcgcggaggtgttctgctacatcgcgcagctggagttcttcttcggcgaggcgccggacaccatgaagagcacgtgcacgtcgctggcgctgctcaccatcgcgctcgggagctacctgagctcgctcatctacgccgtcgtggaggcgttcacggcgacggcgggcggccacgggtggatctccgacgacctcaaccagggccacctcgactacttcttctggatgctggcggccatgtgcacgctcaacttcgtcgtgtacagcgggttcgccaagaactacaagctcaagaccgtgctctcgtgagacgtcattgttagctttgcagctgcttgtcgaacacaagaaagattcgattacatttttgcacaattgccaagttgcgattggtgaaaggtagtagtacagtacagattattacagagtacagacacaattgccaattggcgattggtgaaaggtagtacaggaagaaaattagtgcagaattattttcccctttctctctctctctctctctctcttttaaaaaaaagtgctgcacagatcctatggcatgtcagcaacactttttttagatgatcattttttgttgaaagattacaggatatgattgccaatgtacctttttcatatgcaattcgatctaaggaaagaagtacttcattcaaaaatgaagtgttagag
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| CDS seq | atggacgccggagacgccatggagagcggacagcgcgcggcgctcctgcccgagagtcacggaccaaagactgaagatgatagcctgcaagtgccactcctcaaggataagaaacgcggcggcagcaaggcacctgcaatagttctagggttcgaatgcctggagagcacggcgttcaatggcatctcgacgaacctggtggtgtacctggagaccgtcctccatggcagcaacctggccagcgcgtccaacgtcacgacgtggtacggcacgagctacctcaccccgatcttcggcgccatcgtcgccgacacgttcctcggcaactacaacaccatcctcatctccctcgccgtctacctcctcgggatgatgctggtcacgttctcggcgttcctgccggccacggcggcgctgtgcgcggcgggcgcgacgtgcggcaccggcgcggccgcggcgcagaccgtcgcgttcgtcgggctgtacctcgtggctgtcgggagcggcggggtgcggtcgtcgctgctgccgttcggcgccgagcagttcgacgacgacagcgcggcggatagggagcgcaaggcggccttcttcagctggttctacctctgcgtcgacttcggcctgatcgtctccggcgtgctcctcgtctggatccagcagaacgtcagctggggcctcggcttcggcatcgccaccgcgtgcatcgcggtcgcgttcgccgcgttcgtgctcgccacgcccatgtacaagcgccggttgccgacgggcacgccgctcaagagcctcgcccaggtcgtcgtcgccgccttcaggaaggtcggcatgaagctccccgccgacgccgagctcctgtacgaggtcagcgacaaggtcgactcccagcccaagatcgcgcacaccagcgagttcacgtttcttgacaaggcggccgtcgtctcggagtcggacctggaggagaggccggaggcggcgagctcgtggaagctctgcaccgtgacgcaggtggaggagctcaagatccttctgcgtctgctccccatctgggcgaccagcatcatcgtgtccgcggcatactcgcagatgagcaccaccttcatccagcaaggcagcgccatggacatgcacatcttctcggtgccggtgccggcggcgtcgttaagctccttccaggttctctgcgtcctgacatgggtgatcctctacagcaaggtgatcgtgccggcgctgaggggcttctcctcctccggagccgccggcgagccgtcgcagctgcagcgcatgggcgccgggcgcctcctcatggcgctcgccatggcggtggccgcgctcgtggagacgaagcggctcaacgccgcggcgagcggcgaggcgatcaacatcgcgtggcagatgccgcagtacttcttcctcgccggcgcggaggtgttctgctacatcgcgcagctggagttcttcttcggcgaggcgccggacaccatgaagagcacgtgcacgtcgctggcgctgctcaccatcgcgctcgggagctacctgagctcgctcatctacgccgtcgtggaggcgttcacggcgacggcgggcggccacgggtggatctccgacgacctcaaccagggccacctcgactacttcttctggatgctggcggccatgtgcacgctcaacttcgtcgtgtacagcgggttcgccaagaactacaagctcaagaccgtgctctcgtga
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| Protein seq | MDAGDAMESGQRAALLPESHGPKTEDDSLQVPLLKDKKRGGSKAPAIVLGFECLESTAFNGISTNLVVYLETVLHGSNLASASNVTTWYGTSYLTPIFGAIVADTFLGNYNTILISLAVYLLGMMLVTFSAFLPATAALCAAGATCGTGAAAAQTVAFVGLYLVAVGSGGVRSSLLPFGAEQFDDDSAADRERKAAFFSWFYLCVDFGLIVSGVLLVWIQQNVSWGLGFGIATACIAVAFAAFVLATPMYKRRLPTGTPLKSLAQVVVAAFRKVGMKLPADAELLYEVSDKVDSQPKIAHTSEFTFLDKAAVVSESDLEERPEAASSWKLCTVTQVEELKILLRLLPIWATSIIVSAAYSQMSTTFIQQGSAMDMHIFSVPVPAASLSSFQVLCVLTWVILYSKVIVPALRGFSSSGAAGEPSQLQRMGAGRLLMALAMAVAALVETKRLNAAASGEAINIAWQMPQYFFLAGAEVFCYIAQLEFFFGEAPDTMKSTCTSLALLTIALGSYLSSLIYAVVEAFTATAGGHGWISDDLNQGHLDYFFWMLAAMCTLNFVVYSGFAKNYKLKTVLS |
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| Function | Protein NRT1/ PTR FAMILY 8.3 [UniProtKB/Swiss-Prot:P46032] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0030200 | OsKeNa_02g0030200.01 | Chr02 | 29100276 | 29103775 | + | NAM | ||
| CDS seq | atggacgccggagacgccatggagagcggacagcgcgcggcgctcctgcccgagagtcacggaccaaagactgaagatgatagcctgcaagtgccactcctcaaggataagaaacgcggcggcagcaaggcacctgcaatagttctagggttcgaatgcctggagagcacggcgttcaatggcatctcgacgaacctggtggtgtacctggagaccgtcctccatggcagcaacctggccagcgcgtccaacgtcacgacgtggtacggcacgagctacctcaccccgatcttcggcgccatcgtcgccgacacgttcctcggcaactacaacaccatcctcatctccctcgccgtctacctcctcgggatgatgctggtcacgttctcggcgttcctgccggccacggcggcgctgtgcgcggcgggcgcgacgtgcggcaccggcgcggccgcggcgcagaccgtcgcgttcgtcgggctgtacctcgtggctgtcgggagcggcggggtgcggtcgtcgctgctgccgttcggcgccgagcagttcgacgacgacagcgcggcggatagggagcgcaaggcggccttcttcagctggttctacctctgcgtcgacttcggcctgatcgtctccggcgtgctcctcgtctggatccagcagaacgtcagctggggcctcggcttcggcatcgccaccgcgtgcatcgcggtcgcgttcgccgcgttcgtgctcgccacgcccatgtacaagcgccggttgccgacgggcacgccgctcaagagcctcgcccaggtcgtcgtcgccgccttcaggaaggtcggcatgaagctccccgccgacgccgagctcctgtacgaggtcagcgacaaggtcgactcccagcccaagatcgcgcacaccagcgagttcacgtttcttgacaaggcggccgtcgtctcggagtcggacctggaggagaggccggaggcggcgagctcgtggaagctctgcaccgtgacgcaggtggaggagctcaagatccttctgcgtctgctccccatctgggcgaccagcatcatcgtgtccgcggcatactcgcagatgagcaccaccttcatccagcaaggcagcgccatggacatgcacatcttctcggtgccggtgccggcggcgtcgttaagctccttccaggttctctgcgtcctgacatgggtgatcctctacagcaaggtgatcgtgccggcgctgaggggcttctcctcctccggagccgccggcgagccgtcgcagctgcagcgcatgggcgccgggcgcctcctcatggcgctcgccatggcggtggccgcgctcgtggagacgaagcggctcaacgccgcggcgagcggcgaggcgatcaacatcgcgtggcagatgccgcagtacttcttcctcgccggcgcggaggtgttctgctacatcgcgcagctggagttcttcttcggcgaggcgccggacaccatgaagagcacgtgcacgtcgctggcgctgctcaccatcgcgctcgggagctacctgagctcgctcatctacgccgtcgtggaggcgttcacggcgacggcgggcggccacgggtggatctccgacgacctcaaccagggccacctcgactacttcttctggatgctggcggccatgtgcacgctcaacttcgtcgtgtacagcgggttcgccaagaactacaagctcaagaccgtgctctcgtga
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| Protein seq | MDAGDAMESGQRAALLPESHGPKTEDDSLQVPLLKDKKRGGSKAPAIVLGFECLESTAFNGISTNLVVYLETVLHGSNLASASNVTTWYGTSYLTPIFGAIVADTFLGNYNTILISLAVYLLGMMLVTFSAFLPATAALCAAGATCGTGAAAAQTVAFVGLYLVAVGSGGVRSSLLPFGAEQFDDDSAADRERKAAFFSWFYLCVDFGLIVSGVLLVWIQQNVSWGLGFGIATACIAVAFAAFVLATPMYKRRLPTGTPLKSLAQVVVAAFRKVGMKLPADAELLYEVSDKVDSQPKIAHTSEFTFLDKAAVVSESDLEERPEAASSWKLCTVTQVEELKILLRLLPIWATSIIVSAAYSQMSTTFIQQGSAMDMHIFSVPVPAASLSSFQVLCVLTWVILYSKVIVPALRGFSSSGAAGEPSQLQRMGAGRLLMALAMAVAALVETKRLNAAASGEAINIAWQMPQYFFLAGAEVFCYIAQLEFFFGEAPDTMKSTCTSLALLTIALGSYLSSLIYAVVEAFTATAGGHGWISDDLNQGHLDYFFWMLAAMCTLNFVVYSGFAKNYKLKTVLS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0030200 | OsKeNa_02g0030200.02 | Chr02 | 29103490 | 29103793 | + | IsoSeq | ||
| CDS seq | cgattggtgaaaggtagtagtacagtacagattattacagagtacagacacaattgccaattggcgattggtgaa |
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| Protein seq | RLVKGSSTVQIITEYRHNCQLAIGE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.818940 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0699000 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g47090 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0699000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0030110 | RBH | 0.0 | 1.624313 | 0.575768 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0025950 | RBH | 0.000000 | 1.362451 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0030050 | RBH | 0.000000 | 0.566556 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0029650 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0029870 | RBH | 0.447560 | 11.899895 | 1.967390 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0467500 | RBH | 0.480184 | 59.0072515 | 0.05638 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0029650 | RBH | 0.0 | 0.000000 | 0.041396 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0494800 | RBH | 0.2448145 | 17.0459365 | 0.062468 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0029960 | RBH | 0.0 | 0.319218 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0029690 | RBH | 0.0 | 7.411787 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0030020 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0029870 | RBH | 0.196724 | 0.415359 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0029540 | RBH | 0.0 | 1.991233 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G030110 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0029880 | RBH | 0.0 | 3.532012 | 0.669860 |
