Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0026530 | OGI:02072500 | 14/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:25890149-25890955 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acacacaacaacatatcgcaagatcgatggcgacgacgaattgcctcctcgcgctcgcaatcgcgggcctcgtgcttgtctccctcccaggactctcgcgcggcgacgtcgacgctcgccgcggtcgcgagctggcgggcgggtgcaacccgagcggcacgctccgcccgagcaggagccactcgtgccaggactgctgcaaggccggccggtcctacccgacgtacgcttgctccccggcgaccaccgggagcaccaaggcggtgatgacgctgaacgacttcgaagccggcggcgacggcggcgacccgtcggagtgcgacggcaagttccacaagaacacggagcgcgtggtggcgctgtccacggggtggtacgccaacggcaggcgctgcaacaagaacatccggatcaacgccaacggcaggtccgtgctcgccaaggtcgtcgacgagtgcgactccctgcacggctgcgacaaggagcacgcctaccagccgccgtgccgccccaacgtcgtcgacgcgtcgcaggccgtgtgggacgcgctccgcatcaccggcgaagacgtcggcgagtacgatatcacttggtcggacgcatgagatcgaccggtccgtgatactgttccaaatccaaactttttcatcatgtcatcgacgaagagatcgtgtagcgtactcgggtggattaaagtcttaataacgagtacggtcacatccgaaaggaataaatattacaacgtttaataaaggacatgggcattgctgcaaaaagagccctaccatggacttccgagaagcacca
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| CDS seq | atggcgacgacgaattgcctcctcgcgctcgcaatcgcgggcctcgtgcttgtctccctcccaggactctcgcgcggcgacgtcgacgctcgccgcggtcgcgagctggcgggcgggtgcaacccgagcggcacgctccgcccgagcaggagccactcgtgccaggactgctgcaaggccggccggtcctacccgacgtacgcttgctccccggcgaccaccgggagcaccaaggcggtgatgacgctgaacgacttcgaagccggcggcgacggcggcgacccgtcggagtgcgacggcaagttccacaagaacacggagcgcgtggtggcgctgtccacggggtggtacgccaacggcaggcgctgcaacaagaacatccggatcaacgccaacggcaggtccgtgctcgccaaggtcgtcgacgagtgcgactccctgcacggctgcgacaaggagcacgcctaccagccgccgtgccgccccaacgtcgtcgacgcgtcgcaggccgtgtgggacgcgctccgcatcaccggcgaagacgtcggcgagtacgatatcacttggtcggacgcatga
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| Protein seq | MATTNCLLALAIAGLVLVSLPGLSRGDVDARRGRELAGGCNPSGTLRPSRSHSCQDCCKAGRSYPTYACSPATTGSTKAVMTLNDFEAGGDGGDPSECDGKFHKNTERVVALSTGWYANGRRCNKNIRINANGRSVLAKVVDECDSLHGCDKEHAYQPPCRPNVVDASQAVWDALRITGEDVGEYDITWSDA |
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| Function | Putative ripening-related protein 2 [UniProtKB/Swiss-Prot:Q6H5X0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0026530 | OsKeNa_02g0026530.01 | Chr02 | 25890149 | 25890955 | + | NAM | ||
| CDS seq | atggcgacgacgaattgcctcctcgcgctcgcaatcgcgggcctcgtgcttgtctccctcccaggactctcgcgcggcgacgtcgacgctcgccgcggtcgcgagctggcgggcgggtgcaacccgagcggcacgctccgcccgagcaggagccactcgtgccaggactgctgcaaggccggccggtcctacccgacgtacgcttgctccccggcgaccaccgggagcaccaaggcggtgatgacgctgaacgacttcgaagccggcggcgacggcggcgacccgtcggagtgcgacggcaagttccacaagaacacggagcgcgtggtggcgctgtccacggggtggtacgccaacggcaggcgctgcaacaagaacatccggatcaacgccaacggcaggtccgtgctcgccaaggtcgtcgacgagtgcgactccctgcacggctgcgacaaggagcacgcctaccagccgccgtgccgccccaacgtcgtcgacgcgtcgcaggccgtgtgggacgcgctccgcatcaccggcgaagacgtcggcgagtacgatatcacttggtcggacgcatga
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| Protein seq | MATTNCLLALAIAGLVLVSLPGLSRGDVDARRGRELAGGCNPSGTLRPSRSHSCQDCCKAGRSYPTYACSPATTGSTKAVMTLNDFEAGGDGGDPSECDGKFHKNTERVVALSTGWYANGRRCNKNIRINANGRSVLAKVVDECDSLHGCDKEHAYQPPCRPNVVDASQAVWDALRITGEDVGEYDITWSDA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 3.997794 | 3.847389 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0637000 | RBH | 0.000000 | 0.217803 | 14.539249 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g42450 | RBH | 0.073259 | 0.124872 | 3.670645 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0637000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0026420 | RBH | 0.0 | 4.976044 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0010540 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0026400 | RBH | 0.843490 | 19.928493 | 11.416058 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0025970 | RBH | 0.0 | 0.145764 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0026080 | RBH | 1.298804 | 2.142120 | 18.999872 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0276900 | SBH | 0.024223 | 0.1640695 | 0.050998 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025880 | RBH | 0.0 | 0.0 | 0.656480 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0275900 | SBH | 4.0246785 | 0.0512415 | 1.436731 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0026240 | RBH | 0.0 | 1.029148 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0025910 | RBH | 0.212668 | 19.059048 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0026290 | RBH | 0.0 | 55.044846 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0026100 | RBH | 0.228786 | 2.081060 | 3.009262 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0025760 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G026400 | RBH | 0.0 | 0.0 | 2.983305 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0026140 | RBH | 0.0 | 0.0 | 7.087730 |
