Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0022500 | OGI:02063480 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:22370087-22371897 | ||||||||
| Gene Symbol | NAC1, OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027, DLN60, OsDLN60 | ||||||||||
| DNA seq | cttttgttttaatttcccccttaaccacttcatcacttctctcgtcgatctagtctaaaaggttagcaaatatcctctctctctctctctctctctctctctctctccttttctcgttcttctttgttcttgctagctagctcgctattgctaactcgtttgtgttaatattctgggtcctttgcttaatggttggtgttggttttttctgatgaattgctcgatcgtttatgtgtcaggtttagtagatgcgattagccaggcagcagcagcagcagcaggtggtggtggctgcgacgatggagcatgacgtgcaccaccaccggcagatgatgcagcagcagcagcagcaggagatggacctgccgccgggcttccggttccaccccaccgacgaggagctcatcacgcactacctcctccgcaaggccgccgaccccgccgggttcgccgcgcgcgccgtcggagaggccgacctcaacaagtgcgagccatgggacctgccatgtaagccaagcttagctagctactctcgatctctctcaagtctcaaacagtcgcgcgtacgtatgatcgctagtgagtagtactaggtttgatttttcatgtgatttatgggggtgatcagagatgtgtgtgtacgtgtgcgcatgcagcgagggcgacgatgggggagaaggagtggtacttcttctgcgtgaaggaccggaagtacccgacggggctgaggacgaacagggcgacggagtccgggtactggaaggcgacgggaaaggaccgggagatcttcagggggaaggccctcgtcggcatgaagaagacgctcgtcttctacaccgggagggccccccgcggcggcaagaccggatgggtcatgcacgagtaccgcatccacggcaagcacgccgccgccaattccaaggtacgtacgtgagcgttgatttggttgcacgcgcgcgcgttcgtgtgtgccatgtcgcgatctgatgggtggtctggttggttgggtgcagcaggatcaggagtgggtgctgtgcagggtgttcaagaagagcctcgagctggcgccggcggcggcggcggcggtcggcaggagaggcgcgggcgcggggacggacgttgggccgtcgtcgatgcccatggcggacgacgtcgtcggcctcgccccgtgcgcgctcccgccgctgatggacgtgtctggaggcggcggtggcgccggcacagcctcgctgtcagcgaccgcgggcgcggcggcggcgccgccgccagcgcacgtgacctgcttctccaacgcgctggagggccagttcctggacacaccgtacctcctccccgccgccgatcccgcggatcacctcgccatgtcctccgcctcgccgttcttggaggccctgcagatgcagtacgtccaggacgccgccgccgccggaggagcgggcatggtgcacgagctgctcatgggcggcggctggtattgcaacaagggcgagagggagaggctgagcggcgcctcgcaggacaccggcctcacgtcgtcggaggtgaaccccggcgagatctcgtcgtcgtcgcggcagcaacgcatggatcatcacgacgcgtccctctgggcctattgaaatattcattcatcatcattgaaaattgcattagccattattattagtactgttggccaccgattattgattgtgttgtaatattggtattgttgattataattaattagtacgccaaagagacaaatcacaagagaacgaagtgtgtatgctgtagattaattccgtatgtttgtgaaaatattcttgaac
More
|
||||||||||
| CDS seq | atgggggagaaggagtggtacttcttctgcgtgaaggaccggaagtacccgacggggctgaggacgaacagggcgacggagtccgggtactggaaggcgacgggaaaggaccgggagatcttcagggggaaggccctcgtcggcatgaagaagacgctcgtcttctacaccgggagggccccccgcggcggcaagaccggatgggtcatgcacgagtaccgcatccacggcaagcacgccgccgccaattccaaggatcaggagtgggtgctgtgcagggtgttcaagaagagcctcgagctggcgccggcggcggcggcggcggtcggcaggagaggcgcgggcgcggggacggacgttgggccgtcgtcgatgcccatggcggacgacgtcgtcggcctcgccccgtgcgcgctcccgccgctgatggacgtgtctggaggcggcggtggcgccggcacagcctcgctgtcagcgaccgcgggcgcggcggcggcgccgccgccagcgcacgtgacctgcttctccaacgcgctggagggccagttcctggacacaccgtacctcctccccgccgccgatcccgcggatcacctcgccatgtcctccgcctcgccgttcttggaggccctgcagatgcagtacgtccaggacgccgccgccgccggaggagcgggcatggtgcacgagctgctcatgggcggcggctggtattgcaacaagggcgagagggagaggctgagcggcgcctcgcaggacaccggcctcacgtcgtcggaggtgaaccccggcgagatctcgtcgtcgtcgcggcagcaacgcatggatcatcacgacgcgtccctctgggcctattga
More
|
||||||||||
| Protein seq | MGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDREIFRGKALVGMKKTLVFYTGRAPRGGKTGWVMHEYRIHGKHAAANSKDQEWVLCRVFKKSLELAPAAAAAVGRRGAGAGTDVGPSSMPMADDVVGLAPCALPPLMDVSGGGGGAGTASLSATAGAAAAPPPAHVTCFSNALEGQFLDTPYLLPAADPADHLAMSSASPFLEALQMQYVQDAAAAGGAGMVHELLMGGGWYCNKGERERLSGASQDTGLTSSEVNPGEISSSSRQQRMDHHDASLWAY |
||||||||||
| Function | NAC domain-containing protein 100 [UniProtKB/Swiss-Prot:Q9FLJ2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0022500 | OsKeNa_02g0022500.01 | Chr02 | 22370488 | 22371897 | + | NAM | ||
| CDS seq | atgggggagaaggagtggtacttcttctgcgtgaaggaccggaagtacccgacggggctgaggacgaacagggcgacggagtccgggtactggaaggcgacgggaaaggaccgggagatcttcagggggaaggccctcgtcggcatgaagaagacgctcgtcttctacaccgggagggccccccgcggcggcaagaccggatgggtcatgcacgagtaccgcatccacggcaagcacgccgccgccaattccaaggatcaggagtgggtgctgtgcagggtgttcaagaagagcctcgagctggcgccggcggcggcggcggcggtcggcaggagaggcgcgggcgcggggacggacgttgggccgtcgtcgatgcccatggcggacgacgtcgtcggcctcgccccgtgcgcgctcccgccgctgatggacgtgtctggaggcggcggtggcgccggcacagcctcgctgtcagcgaccgcgggcgcggcggcggcgccgccgccagcgcacgtgacctgcttctccaacgcgctggagggccagttcctggacacaccgtacctcctccccgccgccgatcccgcggatcacctcgccatgtcctccgcctcgccgttcttggaggccctgcagatgcagtacgtccaggacgccgccgccgccggaggagcgggcatggtgcacgagctgctcatgggcggcggctggtattgcaacaagggcgagagggagaggctgagcggcgcctcgcaggacaccggcctcacgtcgtcggaggtgaaccccggcgagatctcgtcgtcgtcgcggcagcaacgcatggatcatcacgacgcgtccctctgggcctattga
More
|
|||||||
| Protein seq | MGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDREIFRGKALVGMKKTLVFYTGRAPRGGKTGWVMHEYRIHGKHAAANSKDQEWVLCRVFKKSLELAPAAAAAVGRRGAGAGTDVGPSSMPMADDVVGLAPCALPPLMDVSGGGGGAGTASLSATAGAAAAPPPAHVTCFSNALEGQFLDTPYLLPAADPADHLAMSSASPFLEALQMQYVQDAAAAGGAGMVHELLMGGGWYCNKGERERLSGASQDTGLTSSEVNPGEISSSSRQQRMDHHDASLWAY
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0022500 | OsKeNa_02g0022500.02 | Chr02 | 22370087 | 22371841 | + | IsoSeq | ||
| CDS seq | ttttgttttaatttcccccttaaccacttcatcacttctctcgtcgatcta |
|||||||
| Protein seq | FCFNFPLNHFITSLVDL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 22371008 | 22371103 | + | OsKeNa_02g0022500.02 | OsKeNa_02g0022500.01,OsKeNa_02g0022500.02 | All |
| A5 | Chr02 | 22370593 | 22370743 | + | OsKeNa_02g0022500.01 | OsKeNa_02g0022500.01,OsKeNa_02g0022500.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.299150 | 1.455680 | 2.159143 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0579000 | RBH | 0.340656 | 1.214636 | 3.491971 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g36880 | RBH | 0.215887 | 0.852060 | 0.854619 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0579000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0022400 | RBH | 0.0 | 1.845218 | 1.924028 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0016680 | RBH | 0.071493 | 0.0 | 1.598550 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0022490 | RBH | 0.000000 | 4.048828 | 4.509489 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0022190 | RBH | 0.000000 | 0.079488 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0022130 | RBH | 0.858766 | 18.889694 | 7.902237 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0364800 | RBH | 4.785545 | 47.401146 | 2.7556095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0021880 | RBH | 0.036242 | 0.764958 | 0.237790 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0393100 | RBH | 4.39474 | 149.296669 | 0.6891735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0022330 | RBH | 0.446982 | 0.710521 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0022060 | RBH | 0.0 | 9.742929 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0022530 | RBH | 1.508916 | 20.388035 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0022200 | RBH | 1.132107 | 1.085961 | 0.299752 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0022020 | RBH | 0.882391 | 3.589156 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G022470 | RBH | 0.355048 | 0.000000 | 1.275711 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0022290 | RBH | 0.311026 | 33.079891 | 3.379793 |
