Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0022000 | OGI:02062440 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:21945729-21956194 | ||||||||
| Gene Symbol | KS5, OsKS5, KS5, KSL5, OsKSL5, KSL5i, OsKSL5i, KSL5j, OsKSL5j, KS6, OsKS6, OsTPS8 | ||||||||||
| DNA seq | aatgcatttcctcttatgtgtgtgtgtgtatgttttatccacttcacactgttttgcaggactgaaaagagtagttgtatacattacaagcaacttatttcatacttacgagtaaaacgttgaacgtttgaatacactacatgctttctagaccaagaattattgagtgatagacattacaagtaacttatttcgacctagtagttataatttgcaggaaagctacacgagcaataaacacttgcaggcagcttaacacagtacaaatttcaggttttgtttggtcacagcattcccaaaccagatggaagaagtgtcacttgcaggggatcaagaatcaccgcatttgctgatgccatcatcccatcggccgtgaaatacccgtccttttccatgtagacgaagtgcaaaaccttgctcatgaaccagaagagcttcctgcacggtggaggaacaacccccccatctctagtcaccagccttaggaggtcacacctactaccctggagaaccctcctcatctctctcttggcctcctccatcgatgcctccggtgagccgtggccgccgccgctgtgggaaagagcatgcaacatgacgctattgaccttccccattttgatttccttctcgtatgtctgcatgtcattgagaaggcggccgatagtgttcacaaggttcattaggtggatgtactccttgctcctgaaaacctcttccgagagttctggtccgacgaacaatgccgccgaggtgatgatggggcctagagcaatggagtccacggcagctgacatgtactcctccactgtttttggcacacacttgtccatcctccattctgcctcggtcaacatgcccctcactgtgaaccaccactgcaaatagattatatattatatcgtggaaaagttaaacctagaagccttaaaagtggaaactcacacacatagaagagagagatttaccgattcggcgatatgatccacgacattgtgtttctgcagcggcacggccttttccgcaatctgcttgctcgtgttgtaaatagcatagaatagaatctctacacactcggaggagaagccaatctcaccgtgcccgtcccacctgtacagcacgatatgatcacaacaggactaatagatattagttgtacaaaagacatagtgtacaggtgtgttgtacttctctattaatttgaccaagttctccatttcttcttttgatccatcaccgtcaaagaagtcatcgactgtggtcgtcaagatgcagttctgggtccatgcaatgcgggcttcggataattcagaagggaacatggttgcagcagcactgaaataggtgatcgatggcattaatcttgcaaatttcagctcatccaatctggtctgtgccacccaactgtcatatgctcaatattagtcaatggtatcaaaaacatcttatcacaatggatgaatcggggatatgtatatcatatatagatagattttgcacctattaaggtcttggagttcttgttggtagacagattgagaggaatggaattcgtcaacagccaatgctagaatttcgtcatgtgtaatagcgccactgatccaaggttataataggttcacaatttagacaactataacagtaaagaaataaattgtacggctgtgatgtgtaacaattatatctaccggtatcctgatttcagcagcttgaagccctcaatttttagttgttccttggtcttgaattgttctatgttcctcttctgctctagcctttccaaggtggcatagactgggaatttcaaggcatactccacctgcgaaagtatgataatggcattatgagaaatatttgccttctcttttgcatggctgagatgttttttaattattcaagaacattagttcgctaagaggttatttatttagtacttgcctctagcatttctgatttgtgtgtcattttggaagatattttttcctgtagtactcttgctgaccaagaaccaatatcttgtagaatcaaatcatcttccaagcaacgaatttgtgaacttctgtacaactccagcaaagccttagtatcatttagatatccatgaattgagtcatcaaagctggattgttccacaaattgagccattccatctgctcaatagttccgaaatgattattaacatctccaaatgagagtttgtactgcaaaacggaaaaaaagctaggatattcaaatttaagtgtcctaaagctccatgcaatacctgaactgatgtcataaccatgcatacgtagtaggcgaaatgccatcgcacatgttcccatgtccaacattagctcctcctcgttatgtatccataacctgcgaacagaatacaatagaaataaagtagtaggtacaaaggcacatcaaattgccatcattagcccatcctataactttttaattaggtcattttttatgagttgctgttacctgtatatcatgtccaatatatcacttatttcacaagaaaaattattagagatacccatcttttcaagagtatccaccatgcaaagctgtgagtaagcattttgcggatacatcactgggactggaaaacactcatttccaattagtatatttgatatctcatatatctagttgacattcttggtcacttgcttgggcaggggggtgggggggggggagcacacctgggccatcgagcttgcttacaagtgaatccaagtaacagagggcactatcgttgtggccatggattactgtagcagcagttgcagaaggtgagttgaaaatcgatctgttcttcctttgatatgccattacctgatcccaatcttgtaggctgcccaacccttcagacacatatgccatgaaggctcttcttgatgaagctgtaccataagcatccctgaccatggagatcgtcaaatgataacattgaaaattctaaataaaatataaggactttttaaggagctccaagcatatttgaacagttcattggtgtttgatccaatgggtgatataatctattaccttgttataggtaaaacctcatagtaaggaaagaaaacatcttattgcaaatgccattaacaacaaacctaacaccttaataagggaagtataataagtaaatatactccaaacctaaccctttaataagggaaatatgataagtaaatatactccattccaaaatataagtacttttggaagttcgaagtttctcccggaatacaagggcttagaacatctcttgcaaattctcaataagaatcttcagtaccaaaagaaactgtcattattttgtgttttgggtgctccaactccaacatcccaaatggatgaaccaatcccaccccgtcctcccaccaccgcccccacagtaccaaaagaatactgttccatgtgattttttttaatatgtggctacttctaagggacaaattgaacacaagacaaaagttggacataaagcattatgcccaggaggatgtagatctatcttgtgctttgtgcgtggggccaagagaaaccttaatgcatttgtttttcatgtttctttagcaagagctactaggatcatcttggaatcaggtggaatactaatttgggaatttgtcaaatgctagtagcaaggctatagtttagaagaaagggttttcttgagaacatatcttttgcttgttggcctatttggaaacaaacaaatcgaaaggtttacgacaacgtcttgcctgattaagagttggtttgatgtttttaggaatgagatttttctacatgtttgtacgttaaatgatattctaacctctattgttcttaactggttacaagttttgtaattcttgggtagtagtattttactaaaaaaatattatttggagaaagacataaaataacgctagttccatgcgattttttttaaaaacaaaatatagttaacatactgagatgcaacattttttgttgtgttataggcctaatttacgtatatcctagttaggaattgtagaaaatgaaagatgtgtgaaagtaggggtggcaacggggcaaggcgtggggtgagttggacagaaacgtccccgcccccgctttcctacgggtttccttggcccgggccccagaagaatgaacggggcgaaatcaatccccactctcggcccctctagggcctcgcaacctgacagacccccatatggaatcaaatcacccttcaaacaacacaacacaatttacaataatagcacttcaaagtggagataaacaacaccgatttttaaattaggggaaaacccagatctgattacaacagaatctagaaaacccaatctcacactaaaatcaatatagcagcaaaacattttctgtagcatcatactagaagtgccacatcaagagccttgagtccttgcaaaggtgactaggggctagacggtggctggaggtgtggtgtcaaggaaactcggcaacaatgtggccaggtgccgaagtgaagagtcagcggccgacgagaaagcacgacagcgtggcaacacggtgaagagtcgacgaccgacgagaaggcacggagacgcagagaagaggaggtgaggagccgcggtgaagagtcaaagctggtgtggagtggatccggcacagaggagcagccgcctccggccttttgctgtgactgcattggggcaatcgcgcgtcgtgatgggcggcctggggctggcagcagggtgaggaagagagtgaggggagaggatctagcatcgaggagcagctgtcgccttgtggtggattgcttggggctggtggctgggagggagagtgtgaggggattttagcttatatatggagaagttggaatggatcaactgggcttacacacttcaaatgggttgttttagaggagtagcgcacactcgggaccctcgtcgggtcacctgatggttgctttcaatcaccgccctgcacccgaaaatatgtagggccccggtcctgctcaccagcgggtgagaattctcacctgtggcaagtcctcggttctaacggagaaatttccacaccctaagtgaaaggtatcaccgggggtggactaatggcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatggatgtccaaacataacaaagttttaattttaaaaattgattaggagggaaggattaatagttgtcctatcgtctgtaaataagtacgtttgttttcctgtaagtacgtacatacattttatttattttcttaataggtgtgctgttggtacctacgcactctgtttttcctcgccggcatttaggagggacaaatttgttagatagatctaggccttatttgggagagttaaaaattctgagaagccgttggtgagaatctggagaagttgacaaatccaacttctagctttttagttcattttatggattctataactacagctgtttagaatctaggttaaaatctagactttgggggggaacttatggtaccaagagattctaggaaaagttccagctgccagaagctcacccaaacaaacacctaatagatggtaaaaagtaatgggcacatcaataatttaataatgtaaatgtaaaccaacagtccattgttttgtttctccttaaattttttaagaatttttcgtaatttattagagtgccacatgacggtttagtagcatttgttgaagtgcaatgtaaggattaagagcgttttagaaagtttaatgaaattttagtatataatagatagatgactgttagtttatagggagaatacaacaaaaagcacttgcgagctacttttctgtttcatattataagtcgcttttgactttattttgttaccgagtttatgaaaaaaattagcataatctaaaacacctaattagtttcattacaactaacttttaatatattttgatatatgtttgttttgtgaaaaaaatgttgctatatttttctatacacttggttaaaacttaaaagaaatttggctagaaaaaaagtcaaaaaaacttataatatgaatcagagggagtattttaaatgcatgagaattttgcctcatttgtattaaggatagaagattgatctatatgcaccagaatctagtgtaccaaattagttcataagctaatgagaaagggttggaaagtttcttctacataaacaagccctacatgtctggctgtgtcaccaccaatattagttgtcacgtaaatacaaagctaaaagtaacaaataaatacaaatattcacacttggattttgaaatcgactaacctttccaattcaatcttccgcatgtgaaaaatcccatcaatatctgtttgcataacagggaattccaaacccgttccagtggcaaggttaagcaagccagaaaaggtaatgttaaaacccacaggagcaatagtttgctcatccatggcaacccagaaattttttccaataaaattcagtcctgccaaaaccatttttcgtagctatataagaatgtttcaccctacattataaatatctagacaatatattaaaacaacaacaacataaatgcaattattgatttgtacctctgctgatgtgatctcgtccagtattccatcttttcagtgcaacaacacatgccaatgtacacaaaagaatgtctttgttgacaaccgaacctggcaggtttgtgccccaagatccatcatcatgttggttttgcagtatccactcgatacattgcgggaagcgtggagtttgatgagagccctgcactggcaccatggccacccatgccgtgtcgtatgaagatggtgataattgaacttcccgaagttgcttccttatcttatcctgcagttggttcttctgctgcatatcccatcagaataataaactcaaccatcgatatgtttcacaattcaatgcacgaggtttagttacaatactcagctgctgttcgatctagcctaatctgttgatgatcacaactaatcgagtctggttttttagaagctttaatgcgatgaagtcattggtggcatttttccttctttttttttttgccaccactgagcttctttggtcatggatgggtacatagagttctgaagtgagattgttttgctgttttctgggtgaaaacattgtagatctagtttagcttgatcaacaatatcgatgtacgtttattgatctaatcccttatgaaaggtgttgtcttgaaattgttgtggtgaaaacctaactttttgataggacaatatggtaaacatatatatatgatattttctttaggaaggtactatcgcagtctcttggagagtgcctcgtttgcatagatggccttcatgtattctcttttcatctttcagattgcattttcatattttgtcatgttgttgtggtttttctactgattttggcagtgcgcatctctggctagtcactagttagtacggaggtcgatagtttcttttaatgaattactccattatgtattaaaaaatggaccattaattactccattatatattaaaaactgaaccatgtatatatttgtcctaccatgccttgttggcttcccgcattcctccctaatcccaggctcttctcaacacctgcagctcctggggaaagcgaagaaaatgcgtgagatacctctttgcacttgtaaggattgtgatagacaataaaatttatctgtctagtaacaacctcaacaactgtactctcaaatactcccatcagtttcatattataagtcatttgacttttttcctagttagatttctttgagtttgtccaaatttatagaaaaatataatagtattttcaacacaaaacaaacatattatcatagtgtattcaatgttagaacataatattttagacgttgctaatttttttataaacttgatcaaacttaacaaagtttgattagaaaaaaaaatcaagcgacttataatatgaaatagagagggagtagcaaagaggtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtactcaattcaaatgattatgattttttttaaatggttaggtattaatattaactactttactgactagttcaaaacaagttttaattgaatttaaacatatttttattagaattcgattctaggtatatagcatccgaacatataattagttaggtatgtaatattggattgtgaaataaagttaaatttgagttgttttgttgataggtataggtatgaatcgaatacttataactaggtatatactcacaatttgaaatttttgaaaaatttgggcggatttgtgtatttcataccatggtgccccatatgagtgtcctatatatatgtgtatgtatacacatatacatatgcatacatacatatatatatacatatatatatacaataaatcatatgagatattttgtagcgcttgggaggtacctcatacctcttatgctcacacgaagaggaggtgctctgttgaactgctctatcatcccacggggtgaagctctgaggaattgtcctgagcatgctgaactcataggaagtatcatccacaactaccctataaggatactacacaatattattctatgttacatccaacatgggtttatgctgaaaaaataataataatataagcgaagtcatctagatctagtttatgattcagctatctatattactccctttcatcgtaggtccagttcaccacctcaactattacaaaaagtacaataattaacctcttcaattatgaaagAaaaaaaatacaccactcatatatttaatccggactcttaaatccctcgtaccctattttaggtggtttagggctgagctatcttgatacataaccaaatcttgcaaagtaaactttatgcagtctctcgtttcttacctgtgccatttctaagcctgtgggatagacggtgggttgttctactaatatgaaatattaactgtgtacttgtgatatactccatccgtccatagtgtagcaacttaggctgtgtttgatactcGgggttgggaacccaactccaccgcacggaaaacggagcggtccattagcgtgtgattaattaagtattagttaatttttttttcaaaaatggattaatttgtttttttaaagcaactttcgtatagaaactttttacaaaaaaatacaccatttagcagtttgaaaagcgtgcacgcggaaaacgagggaaaggggttgggaaacttgtggaaagaacgcagccttaggatgcaagggagtactatcttccaagtcaagttaaacgatttgattattgctagctagcatttagcacgtgcgtacgtacagtacgcccttgaggacttgggtttgagaaattatgcattctgaatttatgactggctgcactgccactcacatgtacaccacgagaagaaaaaaaaatatataaaaagaactaggaagagagagagaaagtttcatgcaaatcgggagaacgtgtcagatattaattgaaacatgcagaagtttgaatccgtttgttttttctacggagatatgtatcagttgtttgatgtcatattgtttttgtgcaatgagagatctgtgcaaataaatagaataaagcataaggaacaagtaatatactctattccacaaaagttatgtacgtacgtattactttcatcaccaaaattaagtagaagttaactcatcttgtatctaacaaaaatcaagaagtatatacacgcatgcaacaatgagtattaatatgactactcggattctgatcaaacatttaattttacctctctatttaaattttagatgaataaagactaccaatagaaacaacttatttgaaaaaaaaataaaatatgaaatagtttactcttgtggatggagagagtaagccttaacagcacaggttttgacactacgtcaaacgaggttattttctgtatcagaatacaaacggtggtgtacgaagcaaagtgtagagcactgaaaggacacggatgtttaaaggggcagtctgtttagattcatcggagaaagaaacccaccttatagaaacgagagaggcaggacgcaggagaagcaaaacctggcagaacagggtaggctagctaggccgcagctcgatctctgaacgagagaccaagggggcaggaggaactagctagcagcttatcgttgatcagctatcggccgtgcctgcatgaaagagggcaacacgcat
More
|
||||||||||
| CDS seq | atgcagaagaaccaactgcaggataagataaggaagcaacttcgggaagttcaattatcaccatcttcatacgacacggcatgggtggccatggtgccagtgcagggctctcatcaaactccacgcttcccgcaatgtatcgagtggatactgcaaaaccaacatgatgatggatcttggggcacaaacctgccaggttcggttgtcaacaaagacattcttttgtgtacattggcatgtgttgttgcactgaaaagatggaatactggacgagatcacatcagcagaggactgaattttattggaaaaaatttctgggttgccatggatgagcaaactattgctcctgtgggttttaacattaccttttctggcttgcttaaccttgccactggaacgggtttggaattccctgttatgcaaacagatattgatgggatttttcacatgcggaagattgaattggaaagggatgcttatggtacagcttcatcaagaagagccttcatggcatatgtgtctgaagggttgggcagcctacaagattgggatcaggtaatggcatatcaaaggaagaacagatcgattttcaactcaccttctgcaactgctgctacagtaatccatggccacaacgatagtgccctctgttacttggattcacttgtaagcaagctcgatggcccagtcccagtgatgtatccgcaaaatgcttactcacagctttgcatggtggatactcttgaaaagatgggtatctctaataatttttcttgtgaaataagtgatatattggacatgatatacaggttatggatacataacgaggaggagctaatgttggacatgggaacatgtgcgatggcatttcgcctactacgtatgcatggttatgacatcagttcagatggaatggctcaatttgtggaacaatccagctttgatgactcaattcatggatatctaaatgatactaaggctttgctggagttgtacagaagttcacaaattcgttgcttggaagatgatttgattctacaagatattggttcttggtcagcaagagtggagtatgccttgaaattcccagtctatgccaccttggaaaggctagagcagaagaggaacatagaacaattcaagaccaaggaacaactaaaaattgagggcttcaagctgctgaaatcaggataccgtggcgctattacacatgacgaaattctagcattggctgttgacgaattccattcctctcaatctgtctaccaacaagaactccaagaccttaatagttgggtggcacagaccagattggatgagctgaaatttgcaagattaatgccatcgatcacctatttcagtgctgctgcaaccatgttcccttctgaattatccgaagcccgcattgcatggacccagaactgcatcttgacgaccacagtcgatgacttctttgacggtgatggatcaaaagaagaaatggagaacttggtcaaattaatagagaagtgggacgggcacggtgagattggcttctcctccgagtgtgtagagattctattctatgctatttacaacacgagcaagcagattgcggaaaaggccgtgccgctgcagaaacacaatgtcgtggatcatatcgccgaatcgtggtggttcacagtgaggggcatgttgaccgaggcagaatggaggatggacaagtgtgtgccaaaaacagtggaggagtacatgtcagctgccgtggactccattgctctaggccccatcatcacctcggcggcattgttcgtcggaccagaactctcggaagaggttttcaggagcaaggagtacatccacctaatgaaccttgtgaacactatcggccgccttctcaatgacatgcagacatacgagaaggaaatcaaaatggggaaggtcaatagcgtcatgttgcatgctctttcccacagcggcggcggccacggctcaccggaggcatcgatggaggaggccaagagagagatgaggagggttctccagggtagtaggtgtgacctcctaaggctggtgactagagatgggggggttgttcctccaccgtgcaggaagctcttctggttcatgagcaaggttttgcacttcgtctacatggaaaaggacgggtatttcacggccgatgggatgatggcatcagcaaatgcggtgattcttgatcccctgcaagtgacacttcttccatctggtttgggaatgctgtga
More
|
||||||||||
| Protein seq | MQKNQLQDKIRKQLREVQLSPSSYDTAWVAMVPVQGSHQTPRFPQCIEWILQNQHDDGSWGTNLPGSVVNKDILLCTLACVVALKRWNTGRDHISRGLNFIGKNFWVAMDEQTIAPVGFNITFSGLLNLATGTGLEFPVMQTDIDGIFHMRKIELERDAYGTASSRRAFMAYVSEGLGSLQDWDQVMAYQRKNRSIFNSPSATAATVIHGHNDSALCYLDSLVSKLDGPVPVMYPQNAYSQLCMVDTLEKMGISNNFSCEISDILDMIYRLWIHNEEELMLDMGTCAMAFRLLRMHGYDISSDGMAQFVEQSSFDDSIHGYLNDTKALLELYRSSQIRCLEDDLILQDIGSWSARVEYALKFPVYATLERLEQKRNIEQFKTKEQLKIEGFKLLKSGYRGAITHDEILALAVDEFHSSQSVYQQELQDLNSWVAQTRLDELKFARLMPSITYFSAAATMFPSELSEARIAWTQNCILTTTVDDFFDGDGSKEEMENLVKLIEKWDGHGEIGFSSECVEILFYAIYNTSKQIAEKAVPLQKHNVVDHIAESWWFTVRGMLTEAEWRMDKCVPKTVEEYMSAAVDSIALGPIITSAALFVGPELSEEVFRSKEYIHLMNLVNTIGRLLNDMQTYEKEIKMGKVNSVMLHALSHSGGGHGSPEASMEEAKREMRRVLQGSRCDLLRLVTRDGGVVPPPCRKLFWFMSKVLHFVYMEKDGYFTADGMMASANAVILDPLQVTLLPSGLGML |
||||||||||
| Function | Ent-pimara-8(14),15-diene synthase [UniProtKB/Swiss-Prot:Q6Z5J6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0022000 | OsKeNa_02g0022000.01 | Chr02 | 21945729 | 21956194 | - | NAM | ||
| CDS seq | atgcagaagaaccaactgcaggataagataaggaagcaacttcgggaagttcaattatcaccatcttcatacgacacggcatgggtggccatggtgccagtgcagggctctcatcaaactccacgcttcccgcaatgtatcgagtggatactgcaaaaccaacatgatgatggatcttggggcacaaacctgccaggttcggttgtcaacaaagacattcttttgtgtacattggcatgtgttgttgcactgaaaagatggaatactggacgagatcacatcagcagaggactgaattttattggaaaaaatttctgggttgccatggatgagcaaactattgctcctgtgggttttaacattaccttttctggcttgcttaaccttgccactggaacgggtttggaattccctgttatgcaaacagatattgatgggatttttcacatgcggaagattgaattggaaagggatgcttatggtacagcttcatcaagaagagccttcatggcatatgtgtctgaagggttgggcagcctacaagattgggatcaggtaatggcatatcaaaggaagaacagatcgattttcaactcaccttctgcaactgctgctacagtaatccatggccacaacgatagtgccctctgttacttggattcacttgtaagcaagctcgatggcccagtcccagtgatgtatccgcaaaatgcttactcacagctttgcatggtggatactcttgaaaagatgggtatctctaataatttttcttgtgaaataagtgatatattggacatgatatacaggttatggatacataacgaggaggagctaatgttggacatgggaacatgtgcgatggcatttcgcctactacgtatgcatggttatgacatcagttcagatggaatggctcaatttgtggaacaatccagctttgatgactcaattcatggatatctaaatgatactaaggctttgctggagttgtacagaagttcacaaattcgttgcttggaagatgatttgattctacaagatattggttcttggtcagcaagagtggagtatgccttgaaattcccagtctatgccaccttggaaaggctagagcagaagaggaacatagaacaattcaagaccaaggaacaactaaaaattgagggcttcaagctgctgaaatcaggataccgtggcgctattacacatgacgaaattctagcattggctgttgacgaattccattcctctcaatctgtctaccaacaagaactccaagaccttaatagttgggtggcacagaccagattggatgagctgaaatttgcaagattaatgccatcgatcacctatttcagtgctgctgcaaccatgttcccttctgaattatccgaagcccgcattgcatggacccagaactgcatcttgacgaccacagtcgatgacttctttgacggtgatggatcaaaagaagaaatggagaacttggtcaaattaatagagaagtgggacgggcacggtgagattggcttctcctccgagtgtgtagagattctattctatgctatttacaacacgagcaagcagattgcggaaaaggccgtgccgctgcagaaacacaatgtcgtggatcatatcgccgaatcgtggtggttcacagtgaggggcatgttgaccgaggcagaatggaggatggacaagtgtgtgccaaaaacagtggaggagtacatgtcagctgccgtggactccattgctctaggccccatcatcacctcggcggcattgttcgtcggaccagaactctcggaagaggttttcaggagcaaggagtacatccacctaatgaaccttgtgaacactatcggccgccttctcaatgacatgcagacatacgagaaggaaatcaaaatggggaaggtcaatagcgtcatgttgcatgctctttcccacagcggcggcggccacggctcaccggaggcatcgatggaggaggccaagagagagatgaggagggttctccagggtagtaggtgtgacctcctaaggctggtgactagagatgggggggttgttcctccaccgtgcaggaagctcttctggttcatgagcaaggttttgcacttcgtctacatggaaaaggacgggtatttcacggccgatgggatgatggcatcagcaaatgcggtgattcttgatcccctgcaagtgacacttcttccatctggtttgggaatgctgtga
More
|
|||||||
| Protein seq | MQKNQLQDKIRKQLREVQLSPSSYDTAWVAMVPVQGSHQTPRFPQCIEWILQNQHDDGSWGTNLPGSVVNKDILLCTLACVVALKRWNTGRDHISRGLNFIGKNFWVAMDEQTIAPVGFNITFSGLLNLATGTGLEFPVMQTDIDGIFHMRKIELERDAYGTASSRRAFMAYVSEGLGSLQDWDQVMAYQRKNRSIFNSPSATAATVIHGHNDSALCYLDSLVSKLDGPVPVMYPQNAYSQLCMVDTLEKMGISNNFSCEISDILDMIYRLWIHNEEELMLDMGTCAMAFRLLRMHGYDISSDGMAQFVEQSSFDDSIHGYLNDTKALLELYRSSQIRCLEDDLILQDIGSWSARVEYALKFPVYATLERLEQKRNIEQFKTKEQLKIEGFKLLKSGYRGAITHDEILALAVDEFHSSQSVYQQELQDLNSWVAQTRLDELKFARLMPSITYFSAAATMFPSELSEARIAWTQNCILTTTVDDFFDGDGSKEEMENLVKLIEKWDGHGEIGFSSECVEILFYAIYNTSKQIAEKAVPLQKHNVVDHIAESWWFTVRGMLTEAEWRMDKCVPKTVEEYMSAAVDSIALGPIITSAALFVGPELSEEVFRSKEYIHLMNLVNTIGRLLNDMQTYEKEIKMGKVNSVMLHALSHSGGGHGSPEASMEEAKREMRRVLQGSRCDLLRLVTRDGGVVPPPCRKLFWFMSKVLHFVYMEKDGYFTADGMMASANAVILDPLQVTLLPSGLGML
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0022000 | OsKeNa_02g0022000.02 | Chr02 | 21945808 | 21956194 | - | IsoSeq | ||
| CDS seq | atgagcaaactattgctcctgtgggttttaacattaccttttctggcttgcttaaccttgccactggaacgggtttggaattccctgttatgcaaacagatattgatgggatttttcacatgcggaagattgaattggaaagggatgcttatggtacagcttcatcaagaagagccttcatggcatatgtgtctgaagggttgggcagcctacaagattgggatc
More
|
|||||||
| Protein seq | MSKLLLLWVLTLPFLACLTLPLERVWNSLLCKQILMGFFTCGRLNWKGMLMVQLHQEEPSWHMCLKGWAAYKIGI |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 21952673 | 21953373 | - | OsKeNa_02g0022000.01 | OsKeNa_02g0022000.01,OsKeNa_02g0022000.02 | All |
| SE | Chr02 | 21953434 | 21956019 | - | OsKeNa_02g0022000.02 | OsKeNa_02g0022000.01,OsKeNa_02g0022000.02 | All |
| A5 | Chr02 | 21947547 | 21947721 | - | OsKeNa_02g0022000.02 | OsKeNa_02g0022000.01,OsKeNa_02g0022000.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.089993 | 0.0 | 2.429778 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0571300 | RBH | 0.083032 | 0.173451 | 1.033454 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g36220 | RBH | 0.054489 | 0.113209 | 0.258162 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0571300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0021900 | RBH | 0.0 | 0.0 | 1.054084 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0022010 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0022010 | RBH | 0.456262 | 0.0 | 2.997864 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0021700 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0021660 | RBH | 1.095780 | 0.0 | 21.020046 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0358600 | RBH | 0.7731885 | 0 | 0.0312475 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0021400 | RBH | 0.0 | 0.0 | 2.491111 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0385500 | RBH | 0.566588 | 0.005286 | 0.1289045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0021830 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0021570 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0022040 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0021740 | RBH | 0.386913 | 0.0 | 0.931378 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0021560 | RBH | 0.032647 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G022020 | RBH | 0.0 | 0.0 | 1.033793 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0021780 | RBH | 0.0 | 0.0 | 6.952563 |
