Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0020910 | OGI:02059740 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:20891445-20894285 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caaaagtttatattttcatttcttagagtacagtttgagtctgagtcggtggaaactcgggcacatcttctaaagaacccagaagtacatctttctcattgtcagcagtaagtctaaaaggttagtcgatgcttctttcaagtggcataggaaagtgcatactgggtaacattttctagatatttttccaattccttttctccactctcaagagtctcccaaagtgatttcctcaattcctcgtttccttgactttttgtaacaaggtcataagcatagcgcataacatggctgcagtatgcagcttcatcatccatacattcttgataggatgattcatattgctttggattaaaaacacacttcttagcacctttggtccacctcttcagtatataggtttctggaatactgcacacattcttgatgctaagagctttaagagcatgtggacaaagcaaacccattgtttcaaacttactacagctgcaattgagttgcattgtcatcatatcaaaatgaactgtgcagactcttgatcctcgcccttgcattgtcatctcaaattgatatctgttattgtcttcgcactgaagctccttgaattttgtggctccacatccatcaagaaaatacgtctcaaacaacttgtagattctgtatgtataaacttttgctgcatgattcaaaatatcactgtgctttataatacaagcaggaggcttttggctgcaccgcgtgtcttcatcgatctctttttcacgccaatcttcagtcaacttgtccacaacaacaacaattgtagacggagaggtaaatttctcggcaatgcagttaaagatgttactcagactgtcacattgtggctcatattcaaccccaccatcaaaagtgtgtttgttgagagcaccacaccacttctgcttgagtttataaagtttcttaagccatttgttatcctccaacttaaactctctgagcatcccagcccatgtttcctcaaactcagcttctgagtcacatccctgcatacacttggtgaacagcttattaaatgctttggaaccattaagtgtaccaagacgagaagcagcattcttttgtatgtgccagcgagagatgcgatggcatgtatttggaaatacttcctcaattgcctttgacataacttgatcttgattggtaaaaatagagcgaggatgccgattgcccattgcctccaagaaagatttaaatagccacacaaaagatgacatagactcgtcagctaatagagcacagccatacatggtgttctgccaatggtggttcacaccaacaaacggagcacatatcaaattatgtttgtttaagcgataagttgcatcaaacacaacaacatcaccaaaacagtcaaagtcaatcctgctcctgccatcacgccagaaaaaattagtcatccgaccgcctcggtctatttgaacatcccaatagaacataccatcttcatttgccctgctcttaaggtgtcttacaaggttctgcaaatctgcattccctatggcaagtgtccttgccatactaatgtagcatgagagtgaatcttgctttgacgtctctacagaacttgacctccctgctataagtgatcttgcagaccgtaaaagatgtcgttcttcaggtcttgccaagttgtggttgtgatcagagaccagccggataaccttccactccccgtggttattcactctgaagcgaaccatggccttgcaattcgtcctagtatgtgggtcattgaagtttgcatcagtaagcctctccccttccttcaggccctccttggagcagaagtaatccttggtcctgatccttttcgtgccagtaaagtaggactgcttcccctttcggatactgaaccccatgcggtgcccatagtcacagtacagcttgtacgccgcctcctcgctgtacactaccttgcggagtagttcctcggtgccctccttgctgccatgaaccgttgctgcctcttcagtctcggcttcatcaccatacgccctcatccccatttcatcaccagagttagtaaccgccccttgtccttccatgaccctgtcgccaccagcatcgtcatgctgcgacccaattccttgatctacaccaacgcccgtctcaactgcgacgatagcattatcgtcaacacacatcggatctccacccccgccttcacagccaccttcaccgtcagtgttcaccatcactgcaaaaccccgagataattgggatcaatgtgtcaaagccacatcataaggcaagtgtaacaacgacacacctatcatcattcctatatatcaaccgaaaaaatcccaaaccctcacatagatagaaataaaataaagaaatgcagcaccttcctaacggacatagtggcggatctaacataggacatggggggttcagtttttgggaaaccatcaaactgttagtagtattaaggttaaggcaaaatttctagaacagaagttagggttaacgcaaattcgagaaaacaaaagtgcgtgggtagagagagagatgggagcgtaagcgtaacggatgcggcggaagcagtgggacgagcgacggcgaccctgctcgctcgctcgctggctggtgcgacggatggggatcggcgcaggcggcggtggcggaggacgtgctcaccaggatggatgcggcggaagcagctggacgaacgacggcgccccctgctcgctcggcgggatggatggggatcgccggagccggagccggaggcggcagcggtgggcaagggcaaactgacgaggaggcctctgtcaggattactccactcacgctgtc
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| CDS seq | atggtgaacactgacggtgaaggtggctgtgaaggcgggggtggagatccgatgtgtgttgacgataatgctatcgtcgcagttgagacgggcgttggtgtagatcaaggaattgggtcgcagcatgacgatgctggtggcgacagggtcatggaaggacaaggggcggttactaactctggtgatgaaatggggatgagggcgtatggtgatgaagccgagactgaagaggcagcaacggttcatggcagcaaggagggcaccgaggaactactccgcaaggtagtgtacagcgaggaggcggcgtacaagctgtactgtgactatgggcaccgcatggggttcagtatccgaaaggggaagcagtcctactttactggcacgaaaaggatcaggaccaaggattacttctgctccaaggagggcctgaaggaaggggagaggcttactgatgcaaacttcaatgacccacatactaggacgaattgcaaggccatggttcgcttcagagtgaataaccacggggagtggaaggttatccggctggtctctgatcacaaccacaacttggcaagacctgaagaacgacatcttttacggtctgcaagatcacttatagcagggaggtcaagttctgtagagacgtcaaagcaagattcactctcatgctacattaattggcgtgaaaaagagatcgatgaagacacgcggtgcagccaaaagcctcctgcttgtattataaagcacagtgatattttgaatcatgcagcaaaagtttatacatacagaatctacaagttgtttgagacgtattttcttgatggatgtggagccacaaaattcaaggagcttcagtgcgaagacaataacagatatcaatttgagatgacaatgcaagggcgaggatcaagagtctgcacagttcattttgatatgatgacaatgcaactcaattgcagctgtagtaagtttgaaacaatgggtttgctttgtccacatgctcttaaagctcttagcatcaagaatgtgtgcagtattccagaaacctatatactgaagaggtggaccaaaggtgctaagaagtgtgtttttaatccaaagcaatatgaatcatcctatcaagaatgtatggatgatgaagctgcatactgcagccatgttatgcgctatgcttatgaccttgttacaaaaagtcaaggaaacgaggaattgaggaaatcactttgggagactcttgagagtggagaaaaggaattggaaaaatatctagaaaatgttacccagtatgcactttcctatgccacttga
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| Protein seq | MVNTDGEGGCEGGGGDPMCVDDNAIVAVETGVGVDQGIGSQHDDAGGDRVMEGQGAVTNSGDEMGMRAYGDEAETEEAATVHGSKEGTEELLRKVVYSEEAAYKLYCDYGHRMGFSIRKGKQSYFTGTKRIRTKDYFCSKEGLKEGERLTDANFNDPHTRTNCKAMVRFRVNNHGEWKVIRLVSDHNHNLARPEERHLLRSARSLIAGRSSSVETSKQDSLSCYINWREKEIDEDTRCSQKPPACIIKHSDILNHAAKVYTYRIYKLFETYFLDGCGATKFKELQCEDNNRYQFEMTMQGRGSRVCTVHFDMMTMQLNCSCSKFETMGLLCPHALKALSIKNVCSIPETYILKRWTKGAKKCVFNPKQYESSYQECMDDEAAYCSHVMRYAYDLVTKSQGNEELRKSLWETLESGEKELEKYLENVTQYALSYAT |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0020910 | OsKeNa_02g0020910.01 | Chr02 | 20891582 | 20893681 | - | NAM | ||
| CDS seq | atggtgaacactgacggtgaaggtggctgtgaaggcgggggtggagatccgatgtgtgttgacgataatgctatcgtcgcagttgagacgggcgttggtgtagatcaaggaattgggtcgcagcatgacgatgctggtggcgacagggtcatggaaggacaaggggcggttactaactctggtgatgaaatggggatgagggcgtatggtgatgaagccgagactgaagaggcagcaacggttcatggcagcaaggagggcaccgaggaactactccgcaaggtagtgtacagcgaggaggcggcgtacaagctgtactgtgactatgggcaccgcatggggttcagtatccgaaaggggaagcagtcctactttactggcacgaaaaggatcaggaccaaggattacttctgctccaaggagggcctgaaggaaggggagaggcttactgatgcaaacttcaatgacccacatactaggacgaattgcaaggccatggttcgcttcagagtgaataaccacggggagtggaaggttatccggctggtctctgatcacaaccacaacttggcaagacctgaagaacgacatcttttacggtctgcaagatcacttatagcagggaggtcaagttctgtagagacgtcaaagcaagattcactctcatgctacattaattggcgtgaaaaagagatcgatgaagacacgcggtgcagccaaaagcctcctgcttgtattataaagcacagtgatattttgaatcatgcagcaaaagtttatacatacagaatctacaagttgtttgagacgtattttcttgatggatgtggagccacaaaattcaaggagcttcagtgcgaagacaataacagatatcaatttgagatgacaatgcaagggcgaggatcaagagtctgcacagttcattttgatatgatgacaatgcaactcaattgcagctgtagtaagtttgaaacaatgggtttgctttgtccacatgctcttaaagctcttagcatcaagaatgtgtgcagtattccagaaacctatatactgaagaggtggaccaaaggtgctaagaagtgtgtttttaatccaaagcaatatgaatcatcctatcaagaatgtatggatgatgaagctgcatactgcagccatgttatgcgctatgcttatgaccttgttacaaaaagtcaaggaaacgaggaattgaggaaatcactttgggagactcttgagagtggagaaaaggaattggaaaaatatctagaaaatgttacccagtatgcactttcctatgccacttga
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| Protein seq | MVNTDGEGGCEGGGGDPMCVDDNAIVAVETGVGVDQGIGSQHDDAGGDRVMEGQGAVTNSGDEMGMRAYGDEAETEEAATVHGSKEGTEELLRKVVYSEEAAYKLYCDYGHRMGFSIRKGKQSYFTGTKRIRTKDYFCSKEGLKEGERLTDANFNDPHTRTNCKAMVRFRVNNHGEWKVIRLVSDHNHNLARPEERHLLRSARSLIAGRSSSVETSKQDSLSCYINWREKEIDEDTRCSQKPPACIIKHSDILNHAAKVYTYRIYKLFETYFLDGCGATKFKELQCEDNNRYQFEMTMQGRGSRVCTVHFDMMTMQLNCSCSKFETMGLLCPHALKALSIKNVCSIPETYILKRWTKGAKKCVFNPKQYESSYQECMDDEAAYCSHVMRYAYDLVTKSQGNEELRKSLWETLESGEKELEKYLENVTQYALSYAT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0020910 | OsKeNa_02g0020910.02 | Chr02 | 20891445 | 20894285 | - | IsoSeq | ||
| CDS seq | atgctgcttctcgtcttggtacacttaatggttccaaagcatttaataagctgttcaccaagtgtatgcagggatgtgactcagaagctgagtttgaggaaacatgggctgggatgctcagagagtttaagttggaggataacaaatggcttaagaaactttataaactcaagcagaagtggtgtggtgctctcaacaaacacacttttgatggtggggttgaatatgagccacaatgtgaca
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| Protein seq | MLLLVLVHLMVPKHLISCSPSVCRDVTQKLSLRKHGLGCSESLSWRITNGLRNFINSSRSGVVLSTNTLLMVGLNMSHNVT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.452877 | 2.240812 | 1.121119 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0550900 | RBH | 1.455709 | 1.378936 | 4.124070 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g34590 | RBH | 0.974130 | 0.918481 | 1.050892 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0550900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0020820 | RBH | 0.653084 | 3.216632 | 4.511036 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0015320 | RBH | 0.049391 | 0.000000 | 0.703301 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0020890 | RBH | 1.698627 | 3.403318 | 3.879305 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020640 | RBH | 0.117825 | 0.207018 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0020550 | RBH | 4.715434 | 1.967945 | 9.100240 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0342000 | RBH | 0.6876905 | 1.019959 | 4.328345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020260 | RBH | 0.248321 | 0.100089 | 0.928759 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0367100 | RBH | 0.8518335 | 0.7610865 | 1.878915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0020760 | RBH | 0.310273 | 0.100912 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0020500 | RBH | 0.442541 | 3.664829 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0020930 | RBH | 3.670096 | 4.232156 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0020630 | RBH | 0.813714 | 0.397222 | 1.055371 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0020460 | RBH | 0.761187 | 2.029178 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G020900 | RBH | 0.571194 | 1.449761 | 1.559973 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020650 | RBH | 1.029762 | 6.914960 | 7.026254 |
