Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0019880 | OGI:02056360 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:19637234-19637986 | ||||||||
| Gene Symbol | SAP5, OsSAP5 | ||||||||||
| DNA seq | acccacgtcgtcgatctcgtccactccaattacatccatccatccgctctgcaaccttctccggttgctgcgagcgagagcgagagcgatcgctacagccgccggtggccagccatggctgaggagcagaggtggcaggagggctgccaccgcctgtgcgccaacaactgcggcttcttcggtagccccgccacgctcgacctctgctccaagtgctaccgcgaccgccaaggccgggagagtactgcacccgtcgtcgtcgccgccgcagcctcggcctgcccggctactcatccttcctcgccatcctcgtcgtcttgtccggcgttcttgccttcctccactgccgccgaggctggcgtcgtcgtcgcggcggtggcgaaggcgagcaggtgcgcgagctgtaggaagcgggtggggcttacggggttcgcgtgccggtgcggcggcacgttctgcggcgcacaccggtacccggagcggcacgcgtgcggcttcgacttcaaggccgccggccgcgacgccatcgcgcgcgccaacccgctcatcaagggcgacaagctcaaggacaagatctgatccctccccacctgccgtgctccccgtcgccgccggaagaacgcgcggttggattccaaattaaatacgcttattattatgtaagctacagccggccggcggtgaaatcgccagccagccatgcatgcatgcgactgaaatgaaaatgagttcatatctctgctccttctattc
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| CDS seq | atggctgaggagcagaggtggcaggagggctgccaccgcctgtgcgccaacaactgcggcttcttcggtagccccgccacgctcgacctctgctccaagtgctaccgcgaccgccaaggccgggagagtactgcacccgtcgtcgtcgccgccgcagcctcggcctgcccggctactcatccttcctcgccatcctcgtcgtcttgtccggcgttcttgccttcctccactgccgccgaggctggcgtcgtcgtcgcggcggtggcgaaggcgagcaggtgcgcgagctgtaggaagcgggtggggcttacggggttcgcgtgccggtgcggcggcacgttctgcggcgcacaccggtacccggagcggcacgcgtgcggcttcgacttcaaggccgccggccgcgacgccatcgcgcgcgccaacccgctcatcaagggcgacaagctcaaggacaagatctga
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| Protein seq | MAEEQRWQEGCHRLCANNCGFFGSPATLDLCSKCYRDRQGRESTAPVVVAAAASACPATHPSSPSSSSCPAFLPSSTAAEAGVVVAAVAKASRCASCRKRVGLTGFACRCGGTFCGAHRYPERHACGFDFKAAGRDAIARANPLIKGDKLKDKI |
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| Function | Zinc finger A20 and AN1 domain-containing stress-associated protein 5 [UniProtKB/Swiss-Prot:Q6H754] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0019880 | OsKeNa_02g0019880.01 | Chr02 | 19637234 | 19637986 | + | NAM | ||
| CDS seq | atggctgaggagcagaggtggcaggagggctgccaccgcctgtgcgccaacaactgcggcttcttcggtagccccgccacgctcgacctctgctccaagtgctaccgcgaccgccaaggccgggagagtactgcacccgtcgtcgtcgccgccgcagcctcggcctgcccggctactcatccttcctcgccatcctcgtcgtcttgtccggcgttcttgccttcctccactgccgccgaggctggcgtcgtcgtcgcggcggtggcgaaggcgagcaggtgcgcgagctgtaggaagcgggtggggcttacggggttcgcgtgccggtgcggcggcacgttctgcggcgcacaccggtacccggagcggcacgcgtgcggcttcgacttcaaggccgccggccgcgacgccatcgcgcgcgccaacccgctcatcaagggcgacaagctcaaggacaagatctga
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| Protein seq | MAEEQRWQEGCHRLCANNCGFFGSPATLDLCSKCYRDRQGRESTAPVVVAAAASACPATHPSSPSSSSCPAFLPSSTAAEAGVVVAAVAKASRCASCRKRVGLTGFACRCGGTFCGAHRYPERHACGFDFKAAGRDAIARANPLIKGDKLKDKI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.856325 | 0.423693 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0530300 | RBH | 0.328592 | 0.252176 | 0.795141 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g32840 | RBH | 0.216386 | 0.165164 | 0.199319 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0530300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0019770 | RBH | 0.0 | 3.494182 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0019820 | RBH | 0.0 | 0.0 | 1.765023 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0019610 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0019540 | RBH | 0.0 | 0.0 | 5.918140 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0322700 | RBH | 2.4844145 | 6.447855 | 18.8552525 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0019250 | RBH | 0.0 | 0.642447 | 0.329092 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0342700 | RBH | 2.995925 | 21.952464 | 2.019514 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0019780 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0019520 | RBH | 0.0 | 8.026788 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0019930 | RBH | 0.0 | 8.430231 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0019660 | RBH | 0.0 | 1.127157 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0019440 | RBH | 0.0 | 7.405437 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G019890 | RBH | 0.000000 | 0.0 | 0.470618 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0019610 | RBH | 0.0 | 5.277768 | 0.298424 |
