Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0019820 | OGI:02056260 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:19604177-19607395 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcaactaaaaacgtgaattcttcagtagtaaagagcagcgagggaagcatataaactcaacatatcatggtcggtgctgattttgctgaaacaaatcattggtaatgaaaccttctaacaaatctatggttcgacagatagtcatcagtgcaatatcctgcatctgaattgttatagaacaaaatggagtaattcaaaaagcgtgtttaggttgccgtttcccaagttaaccaaaaatgggtataatccaaggaatggtcctagtcaaacaaactgaagcccatgtcctgcacacacaagattaaaaagaaataatcagtcatcaatccgtcagatgctagtaccatgccaaaaacaatatgatacgtatgctggaaagtatactatatggaaacaagtactaccatcataatggaatggcacgatgcagcctagacattgatgggagtaaaattatctatagatgaaaactgatacaagtatgtaccattccaatttcatgacatgatttgatcgcgtatatagaaaacccaaaaggaatactactgcagtgtatagtgcaaataaaatagatgaacaagcaattcgaagaaactcatgctgatcaacaggataccatgaactcaagcatagagcaatgtatcttacatcatcagattcttctttctcctccaccttctcttctttcttagcctcagattgaggagcagctccaccaccagcagccggagcagctgctgcaacagctacgccacctccgccacatggaacagaagcaaacttctcccgaccggaagcaataatctcagtgatatccttaccagccagttgagacaagagtaactccatcttgccatggtcaacttcagctccaactgttaacatcagaaaagaagaaataatcatgattgtacatgcaggcatgcagctacctaactttatcttttatgcacataaactggcatgcctaacatgacaaacacatagtataacctatagaatgtgaaatgcatattagaccactgaaattctccaagaaaaggccctaacatacacacattggataattagtatcagcaaattttctagcattccAaaaaaaaagctattgttacatgatcatgtcagaagagcaaataaatttcagacaatgcatccttcataggacgctactgaaagatataaattgttgaaagaaacgtccaaatggcaaaactacatgaaaatgtaaggccataacaaaagatacaaaatccccatgtagaatggttagaacttagaattcatacttatgattgtatcatatcataggaaacaaaataaaattcgaacaatgccacaaaacacatgaacacttagataatactcatatcaaggcagaacccacttatttttcagacatctcagagcagccagttctatttcactaatatcattgattgcatgcccttactgctgcaaggacaggacagcatgtggttcttacatagaattttctactgcattacagttttatacctgctgcaatatttttttaccctttctgaaatacgtagtttctttagttcgaaaaagggtgttacaaacctcaaaatgttcaacattaacactaaacattatctggaaaacgaagacaacaacctttcataagcaagcaaatcttagcctcttaacatatgacaaggagtaatgaatcccttgacatcacggaagcaccatctaaaaccccaaaccacttttgcaagcaggctaaatattcatgggggcattaccatcatttgaaaataacgatcatgacaacatgtgacaattgaggggattatccagtaaaactacctgactccagaatagttgtaagatcctccgcagatgggttagggttaccagcaagagtggcaaggagataggcagaaatgaacttcattctgagtagatcacaaaaaaaaattaaaaaGgggtaaaagagcataactataaaaatgaaaaaacagctacagtacaaactaagcttgtactccctccagtcacaattgatcatcacattaccaaaacgaaaatagtcatatttgattgtcacccaacatctacagtcatcaaatttccttttttttttattgtgtgcatgcgtgcaagaatttaattgcgagattcgttaaatcctgctccatatttatcgcttgcatgcatacatgatttaatgagtgattttcgccagattatttaaatccttccgcaactttggttggtcttgtgccatgcgccatgcgcagcatgcacaggcaactgaacaggcactgcgacactatggctttggcctttgattgatgctgctgctacgggttcacgtcctctactataatggcaccaccattacagaagggacctgcatatcactgactgtaatggtagtgacattatggtagacgatcctcgcctgctgctacatgatttatttttccttggtattgctgcacatacctaataggatgatcaattgtgaatggagggaatggagggagtatcgagaaaacaacaatgcatttaaaatcatttcaaacatttagtgagcatcttcatcaaattcatcaagcgaagacaacatttattggacgtttgtttttctatccagaactattctttccatacaccgtcaccacatctaaacaagcatacgcagaaattaagtttaacctaggcgagcaaaatcctgaagataatagtactattgtttcagcacacagttttggtaccaaattctaacgcctttccaaatcttgcatgttctgtccatggctcgaacggctacaagacatctacactccccagttaccacaaaaattcatggacaagggctcaaggaaaaaaaaatgaaatgggtaacccatagaaccctatttggaaaaacacacgcagatctaatgcaaggcttaaggcctacccccatcaatgctctacgcaagaacaaccgatcccacattcccacctacccctaaacatcgcctccgcctacacgacgctcgcagcttaaaatcggcgagcacgcagcaagcgagaggagaccggcgccagcattgcaacaagaaatcgggaggaggatgggtagaggcccttacttggacgacggcggggGgcggtgtggatccgggagccgaagagtgtgcggggagaaggtgacggcggcgaggtcccggctctagtgcttctcgctagggtttccag
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| CDS seq | atgaagttcatttctgcctatctccttgccactcttgctggtaaccctaacccatctgcggaggatcttacaactattctggagtcagttggagctgaagttgaccatggcaagatggagttactcttgtctcaactggctggtaaggatatcactgagattattgcttccggtcgggagaagtttgcttctgttccatgtggcggaggtggcgtagctgttgcagcagctgctccggctgctggtggtggagctgctcctcaatctgaggctaagaaagaagagaaggtggaggagaaagaagaatctgatgatgacatgggcttcagtttgtttgactag |
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| Protein seq | MKFISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASVPCGGGGVAVAAAAPAAGGGAAPQSEAKKEEKVEEKEESDDDMGFSLFD |
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| Function | 60S acidic ribosomal protein P2A [UniProtKB/Swiss-Prot:P46252] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0019820 | OsKeNa_02g0019820.01 | Chr02 | 19604177 | 19607395 | - | NAM | ||
| CDS seq | atgaagttcatttctgcctatctccttgccactcttgctggtaaccctaacccatctgcggaggatcttacaactattctggagtcagttggagctgaagttgaccatggcaagatggagttactcttgtctcaactggctggtaaggatatcactgagattattgcttccggtcgggagaagtttgcttctgttccatgtggcggaggtggcgtagctgttgcagcagctgctccggctgctggtggtggagctgctcctcaatctgaggctaagaaagaagagaaggtggaggagaaagaagaatctgatgatgacatgggcttcagtttgtttgactag
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| Protein seq | MKFISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASVPCGGGGVAVAAAAPAAGGGAAPQSEAKKEEKVEEKEESDDDMGFSLFD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.132475 | 13.646113 | 4.698051 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0529700 | RBH | 0.904951 | 0.838957 | 9.142146 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g32760 | RBH | 0.570269 | 0.525813 | 2.195814 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0529700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0019710 | RBH | 0.267949 | 18.420092 | 6.273417 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0019760 | RBH | 0.589016 | 40.515018 | 10.667521 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0019550 | RBH | 0.000000 | 2.375714 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0019490 | RBH | 0.000000 | 110.925140 | 26.755749 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0322100 | RBH | 6.392138 | 3.946757 | 1.5300755 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0019200 | RBH | 0.190464 | 2.858417 | 2.014237 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0342000 | SBH | 1.5268595 | 1.2000565 | 12.5754235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0019730 | RBH | 0.116518 | 0.676804 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0019470 | RBH | 0.0 | 54.983734 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0019880 | RBH | 0.000000 | 74.896446 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0019610 | RBH | 1.158032 | 5.066459 | 3.429738 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0019390 | RBH | 0.000000 | 28.540520 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G019830 | RBH | 0.000000 | 19.848589 | 5.290488 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0019550 | RBH | 2.156119 | 27.803810 | 25.510330 |
