Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0017830 | OGI:02050200 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:17290192-17296210 | ||||||||
| Gene Symbol | TPR45, OsTPR045, TPR045, OsTPR45 | ||||||||||
| DNA seq | tcaaaatgatgggaggggagaacatacttcatcagggacattaggatcagcaccggcctccaataagcacttcatgatctcagttgagccaacagaagctattaagggggttatattaccaacaccatttacatcagcaccagcctaaaccaagaaaaaaatgttgggttgcctcctctaaaataaatatcctaattaataacattgagaaatgcagtgttgtacaaatacatctatttcctctgaaattccaaatattatgcctctctttaaagttcaaatcaaaacgaaatatctgaaatatttttaagtgcatgtgcatcatAaaaaccttcccatggtatttttcttaactagtcaaatgcccatgtattgctacagaataacaaaatggatcacgtcaattgcttgtgacgcacatatagcaatgcaactgtgaaacttagtggtgcaccccatgaaattatttaccaacataagctcatttgaaagcaaaaataaggcagcgtgtactcacaatagttaatatgcactaatcaaaagaatatgttggctatctgaattcatcaaattatccttttctttctcgtggttggtctgggttgtcatggttttgactgcaccttttcaaggttacttctttccttgtattgtttagttttcctactgggccaaagtagttttggggagtttgcagggcgggcctgaccctgacaaggcacagctggtgcagccatgcggtgcgtgcaacagaagatgggatttgacctatttgttttctcagtaaccagctttttttggtttttcgggaggggaggaacgcccgatgtgtgggaggtgcagatggatgaaactcccctttttagtagtagacatataatagcaccttccccatagtacttttttttttaaaaaaaaaaatggtcgcccttcatactctgctgattggtggcagtttcaggatggttaggagcagaccagcataaatgggcaacacatgtaatctgtagccagctataatcatatcacaaatatgaaattagaatttccaggagatacatgttgaatttccccatgaaatatttgacaccaaaacattctagatgatttactccctcttcactaaatataggtcttgttggacattggcatggtacctaatcaactatcatgaccattaatttctgttgctccctcctgtcatagatatttgacttttagggcaaactttgatcaactatcatagtacttgaactttaagtttatgaaattatggtagcacttttctagacaaacctaagcataccttttctttggggttttaaactaagcattttagaagtcattgatggtcaaagtttcaaattttgaccaaatcttgtcctaattatcaaatatttatgatcggagggagtaatatattgttgtaaatcattaaaaaatattatataagtaatttcaaaataaatctagcaataagaaattatgtggcatcccaatatcatctgacgcagtcaaggtcaaaattaagaatgatttgaaccggtggattcgagggcaaccattatttagtggtgtagacagtaaatcccaaggaacaagccacagtaccttaatcagcagctttacacatttcagtgatgaaccataaatggcgacgaggagaggagtgtagacagcagatacaatcttattgcactgcaaaaataatcagttggccaaaaacctcagtgacaaaaggaaacaaagacacattataatgtaaacaaaaagataaattgatgaaactagaaccgcaatgctcactatacagacttcagagacttgaaaaggggtaactactctacaaatgttatctatcaagggttgcgactgtacttgaactttgaatttcttatgattttaaacaatagtagtgtagaattcagtggaagaaaaatcagtgcagcctccatgaacaaatataatatttatgagtaggagcaagccatgcaatgccgttaaaccatgttaattttatcttacaatggtctgcagtctttaaaaagagtcgggagtgatggtgcactctgcacccatcccgtcaatagaaaacatctgcgtggatggatctacatagacatgtgcatgatatctctccaacttcttttttgtagaaaaatgtattgcaaatgtgcatattatggaggtagttgaccaatctcctgtagttgtgcaatacacagtattgaggataattatattttctttgcatctttacgtttagatttcatggtatatttattaggctgggtatatttattaggctgccaacacaatcggtgggcattacgctaattagaaactaggaacatgaaagcaaaaaatggcatacatcagcattgtggtccaataaaatcttcactacacgatgttgtccattagtagcagccagatgtagtggtgtaccacgaacagacatcgaatcaacttgagcccctttagcaagcaagagctccactacattgcaatatcctgtaaaaaaagaacaagaaatttcaacgggtatcactatgcaagatagttattctatatgatttacttttcctgataacatctgctagatttcagtttgcccttaacatatgtatattagggacataaatgatcaaggaaatataaatattgcattagaatatctattctgagccagaagaaatgataaacaattcctggagaagtacccatgggcaaattttggatattttgatatctgtaaatcaagtaaggagcataggatcaatcaatggcaaatagtagtaacactttggtatcacttttcttttgaacacgcaagagaattgtgtatcatttcattaagagaagaaaaaaaaggacaggaagtgagcagtgcccaccgaccggatccaaaacaggccgtagcctttacaacacacacaaaaaaccccacctccgaggggctattggcctatcaattaactcctttagcctagaagccccggctagcgaccacatgatacactcatttgccactgtttggaggacagtagctacacaagggttagcaccattAaaaacagtcattcctatgcttccaaatctcccataacaccagagtgatgagagagctaagtcctttattagtgtctttgtctctttctctcagcgcccttgaccaccaccttgatgagttggttgtatctgaacctggggctatatgggccagccccatccttaaacaaggtaattgcttcagtggatcattgtgagaaattttatgatatagtcaaattaaaatcgataccttaaaaacgtaaggtggacagttttatatggagagaattagaatagacacccttgataagatctacaacatgtagatagcttgccagatggccatacccagataaatccctacgttcaagggatttggtctaagacctaaatatgcaaataagcacttaggcagcttgttgcccaattaacagtaagcaggtggtcagagttagaccacccagtctacatcaagtcaaacattataagtaccaaaattttcattcattagtaacttcaaaattaacaaatgcttacttactggtgtacaaaaagaataccatggtggcatggtataagaacaagcagcatatatgccacctcacatgtagaaaaactggttttcgatcagttacataaacaaagaatggccaaacagtttatctcagatacatatcataatgttcatttctctagagtctaacacatgaaaaataaattgaagtacagcagacaggcaaaaagatgatatatgcaaaccttcttcagcagcaaaatggagaggggtgaatcctttattatcagctttttctggatgggcaccatggtcaagaaggtacctcacggtagctacatttgcaccattgactgcataagccagaggtgtttcacctgttaaaagcatcaggaacaaatgattatatcaaccaagagcaagttttggggttttagcatgcgtacagtttgctacacatttaccttccatctcctaaagataaaacagaaaccactaatagttcaagtgtgcaacgcataggcctttctaaattatgatcacattacattactaaatgttgattatctaatatgcggcaggttccctttttttccctttgagcagtccaaaatatAaaaaacaaactgcatatttttaatcaaggcaaataaacaccataagataatatttagttaatgatacaaaaggtagtgtcagaaacatgtttaaaatgaacactcaataactgttatacgtaccgcccattgacattcaaataaagtgtgcatcggatttgggaaagcaccataagataaaaagtaaggtcatgtataatgtttgcagcacagggactatttggagaacaatgaaacaaccatggaattatttactcaacctttgttggacaactcatgtgagaatgggagtttacatcaatatactgtaaatgcaagtatcttttccctacatagtggatccaaaatatcaggatattcatgcctataccatgcttagttttagtactttagaacttatcttataataataaggctgactaatgccaatgtcttgttggccaattcagttttaagtatatggattttacataagtaaaatctaatatgctatatgaaaatagggcctaacaaatacgacatatcatgtaccaggtagcatacagatgcaaatgcaaatttatgatggcattcccaaaatagaagtataaacgatggatgatatttgtcaactgaacaatgccaactccaggattcaaatgtactacagcataattgtgagaaataaaattatgaatactaatcaaggggttagacaactatgaaaaactgcaacagtgtgaattggcaaactgaagaagccaagaaacaaatgcaagttcaaaagaaatgctaatcaaggggctagacagctatgaaaaccacaacctcagaggaaaacaaaggaatggttatttttcagtcatgactcatgataacatatatattacctccattcccgatgaaggtccttttgagaattgggaccgatgtagcagttgctaaaaataagaaaagaagcagccaaagaaacaatcacctttcctaacaatgcgctaaacacaaatttagtatatagatggactctgcaaaaacaataataaaaaaaaggggttgtctatatatcatgtgacagagccagttaagtgagtaccattaagtcaaaattagcatcactgaagtaagcatacaagcactcacacaccaaagcacactatgaatggcatcaagtaaatgtgtacgggtatacacgtacacaggcaaactcacatcagtgatcagtcaatgagaataaatgcatccctaaacaaagcgcaactacacatcagccaacgaattctgaaaataacccagcgacactacaaaaacattagtatcgcccaaattccacaattagcaaggcacaaatctccctgcattaattactgctaccaaataggagtagacaacgacgataggatcacgacccgtgctaaatacaatggcgttcgcgggtgtgtgagcgagtgagagggtgaggaccttggtcgtagatggcgttggcatccacccgaagctcctcgaccaggtacctgcacaccgccagcttccccgcgccggcggcgaggtgcagcgcgcccgcgccgcactcccgcacggcctccaccgcctccgcggggcggcccctccctccgtccagcgacctcaccacccctgcaagaaagggcaaatcatcaagcacgcagcgccggccgaacaacatcaaaaccgaaatcggagggggtgtagagcacgcacgcttgaggaagccgaggtcgccgtcggatgccgcctcgaggagcatctcctgccgcggggagagggggacggggctggacgggggcggccggcggcggcttccgcgggcgggaggaggcacgcgagagagcgacgccat
More
|
||||||||||
| CDS seq | atggcgtcgctctctcgcgtgcctcctcccgcccgcggaagccgccgccggccgcccccgtccagccccgtccccctctccccgcggcaggagatgctcctcgaggcggcatccgacggcgacctcggcttcctcaagcgtgcgtgctctacaccccctccgatttcggttttgatgttgttcggccggcgctgcgtgcttgatgatttgccctttcttgcaggggtggtgaggtcgctggacggagggaggggccgccccgcggaggcggtggaggccgtgcgggagtgcggcgcgggcgcgctgcacctcgccgccggcgcggggaagctggcggtgtgcaggtacctggtcgaggagcttcgggtggatgccaacgccatctacgaccaaggtgaaacacctctggcttatgcagtcaatggtgcaaatgtagctaccgtgaggtaccttcttgaccatggtgcccatccagaaaaagctgataataaaggattcacccctctccattttgctgctgaagaaggatattgcaatgtagtggagctcttgcttgctaaaggggctcaagttgattcgatgtctgttcgtggtacaccactacatctggctgctactaatggacaacatcgtgtagtgaagattttattggaccacaatgctgattgcaataagattgtatctgctgtctacactcctctcctcgtcgccatttatggttcatcactgaaatgtgtaaagctgctgattaaggctggtgctgatgtaaatggtgttggtaatataacccccttaatagcttctgttggctcaactgagatcatgaagtgcttattggaggccggtgctgatcctaatgtccctgatgaagtatgttctcccctcccatcattttga
More
|
||||||||||
| Protein seq | MASLSRVPPPARGSRRRPPPSSPVPLSPRQEMLLEAASDGDLGFLKRACSTPPPISVLMLFGRRCVLDDLPFLAGVVRSLDGGRGRPAEAVEAVRECGAGALHLAAGAGKLAVCRYLVEELRVDANAIYDQGETPLAYAVNGANVATVRYLLDHGAHPEKADNKGFTPLHFAAEEGYCNVVELLLAKGAQVDSMSVRGTPLHLAATNGQHRVVKILLDHNADCNKIVSAVYTPLLVAIYGSSLKCVKLLIKAGADVNGVGNITPLIASVGSTEIMKCLLEAGADPNVPDEVCSPLPSF |
||||||||||
| Function | Ankyrin-3 [UniProtKB/Swiss-Prot:G5E8K5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0017830 | OsKeNa_02g0017830.01 | Chr02 | 17290192 | 17296210 | - | NAM | ||
| CDS seq | atggcgtcgctctctcgcgtgcctcctcccgcccgcggaagccgccgccggccgcccccgtccagccccgtccccctctccccgcggcaggagatgctcctcgaggcggcatccgacggcgacctcggcttcctcaagcgtgcgtgctctacaccccctccgatttcggttttgatgttgttcggccggcgctgcgtgcttgatgatttgccctttcttgcaggggtggtgaggtcgctggacggagggaggggccgccccgcggaggcggtggaggccgtgcgggagtgcggcgcgggcgcgctgcacctcgccgccggcgcggggaagctggcggtgtgcaggtacctggtcgaggagcttcgggtggatgccaacgccatctacgaccaaggtgaaacacctctggcttatgcagtcaatggtgcaaatgtagctaccgtgaggtaccttcttgaccatggtgcccatccagaaaaagctgataataaaggattcacccctctccattttgctgctgaagaaggatattgcaatgtagtggagctcttgcttgctaaaggggctcaagttgattcgatgtctgttcgtggtacaccactacatctggctgctactaatggacaacatcgtgtagtgaagattttattggaccacaatgctgattgcaataagattgtatctgctgtctacactcctctcctcgtcgccatttatggttcatcactgaaatgtgtaaagctgctgattaaggctggtgctgatgtaaatggtgttggtaatataacccccttaatagcttctgttggctcaactgagatcatgaagtgcttattggaggccggtgctgatcctaatgtccctgatgaagtatgttctcccctcccatcattttga
More
|
|||||||
| Protein seq | MASLSRVPPPARGSRRRPPPSSPVPLSPRQEMLLEAASDGDLGFLKRACSTPPPISVLMLFGRRCVLDDLPFLAGVVRSLDGGRGRPAEAVEAVRECGAGALHLAAGAGKLAVCRYLVEELRVDANAIYDQGETPLAYAVNGANVATVRYLLDHGAHPEKADNKGFTPLHFAAEEGYCNVVELLLAKGAQVDSMSVRGTPLHLAATNGQHRVVKILLDHNADCNKIVSAVYTPLLVAIYGSSLKCVKLLIKAGADVNGVGNITPLIASVGSTEIMKCLLEAGADPNVPDEVCSPLPSF
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0493300 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g29160 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0493300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0017690 | RBH | 0.0 | 0.0 | 1.414064 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0017790 | SBH | 0.0 | 0.0 | 0.485911 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0017730 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0017640 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0017560 | RBH | 0.000000 | 0.0 | 4.186494 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0286700 | SBH | 0.1483715 | 0.1109855 | 36.684801 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0017330 | RBH | 0.0 | 0.0 | 0.310612 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0307900 | SBH | 0 | 0.0047485 | 12.2169555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0017840 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017430 | RBH | 0.076854 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0017980 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0017750 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0017460 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G017910 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0017650 | RBH | 0.0 | 0.0 | 0.505215 |
