Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0017820 | OGI:02050200 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:17284349-17285067 | ||||||||
| Gene Symbol | TPR45, OsTPR045, TPR045, OsTPR45 | ||||||||||
| DNA seq | tcaacggctcttgctgctgctaaagcatacggaagtataaaacaaagatagaaacttagaaagaaagaacctgcaggctgtggctctcgagtatagacgcttcattcaggttgtcagcttagcaccatcagatatcttcaaggactccatcgcctccctgcgtacatatatacacggagcacgtcgtggcacaacaggttagagcgagctccagcgtctcaagcttccgtaaaatgtttgcacgtgttgatcaacaacactagaaaccatataggttgaaggtttactgaggcacaggatcgaaggccagtaggccactcactaccatcacaaactagaacacgcagatatgcagtaaaaccgtaaccagagatactataccttagagcgttctcaatctcagagttccctgggtccattttgaaaccatcgaggagagcatcacacgccttttggtattcctgcatatatacatacggagtagggtgtgtacagaaacagatttgcttcagattatgaaggggaaagaaaaacgatctcaccttcagcagcattagagctgctccttggcgatagcaggcctttggccaatcaggccgcatcatcctacaagtataggcatccccataagctttgtctccatcacccatgtgaagaaagcagaggctcctgtttgaatacagggttgcatcattgaagtcgaggcaaagcgccttcat
More
|
||||||||||
| CDS seq | atgaaggcgctttgcctcgacttcaatgatgcaaccctgtattcaaacaggagcctctgctttcttcacatgggtgatggagacaaagcttatggggatgcctatacttgtaggatgatgcggcctgattggccaaaggcctgctatcgccaaggagcagctctaatgctgctgaaggaataccaaaaggcgtgtgatgctctcctcgatggtttcaaaatggacccagggaactctgagattgagaacgctctaagcagcaagagccgttga |
||||||||||
| Protein seq | MKALCLDFNDATLYSNRSLCFLHMGDGDKAYGDAYTCRMMRPDWPKACYRQGAALMLLKEYQKACDALLDGFKMDPGNSEIENALSSKSR |
||||||||||
| Function | Tetratricopeptide repeat protein 28 [UniProtKB/Swiss-Prot:Q96AY4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0017820 | OsKeNa_02g0017820.01 | Chr02 | 17284349 | 17285067 | - | NAM | ||
| CDS seq | atgaaggcgctttgcctcgacttcaatgatgcaaccctgtattcaaacaggagcctctgctttcttcacatgggtgatggagacaaagcttatggggatgcctatacttgtaggatgatgcggcctgattggccaaaggcctgctatcgccaaggagcagctctaatgctgctgaaggaataccaaaaggcgtgtgatgctctcctcgatggtttcaaaatggacccagggaactctgagattgagaacgctctaagcagcaagagccgttga
More
|
|||||||
| Protein seq | MKALCLDFNDATLYSNRSLCFLHMGDGDKAYGDAYTCRMMRPDWPKACYRQGAALMLLKEYQKACDALLDGFKMDPGNSEIENALSSKSR |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0493300 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g29160 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0493300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0017680 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0017790 | RBH | 0.0 | 0.0 | 0.485911 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0017720 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0017610 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0017530 | SBH | 0.0 | 0.000000 | 5.401129 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0286700 | RBH | 0.1483715 | 0.1109855 | 36.684801 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0017310 | SBH | 0.0 | 0.0 | 0.401503 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0307900 | SBH | 0 | 0.0047485 | 12.2169555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0017810 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017410 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0017950 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0017750 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0017440 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G017890 | SBH | 0.0 | 0.0 | 1.309286 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0017620 | SBH | 0.0 | 0.0 | 1.881160 |
