Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0017270 | OGI:02048250 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:16511948-16513426 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaaaaaacatataatgaagttaaattagtgttacctagagagatgtcgtcatcatggtcgcactcatttcgatcgttgccttgaaaaataccggattcatgcattgggctatgggtattttggttcccacttgttacgattggatcataatgattttcacatcctgttgtaacatagagtcagtaatatatatttaacacaaaaatttacaaacggtaacatcattgtagtcccattcataaaaagatgttagcgtacctgaattatgaacagtgaagtcagcactattcatgtttagggttgttaattgagtgacgcgactcattggaacttcgttgggaccatagtgagctacattgttgatgattgtaaatgggagacgtctgggtgtgatattgagatgggaagcttctctttctattaaaacatagaaccatcaatttccactcagtcgaataatatattgttcaaccaaagtgtacaaacaataaagacattacttccttgatgcagtgtggaagaatcattatcttccaagtggcacttcattatatcaacaacacttatatttgaaatatcgccaagtggggctgttcacacggtgagaaaatataagattgtttcgcataatttttaggacatattttaatttttacagatacatattacagatatacctgaagcttgagtttcctcttgagtttcctccttctttcgtttccttctttcacgtgccttcttgttcctatcatccttttgctgtggggtcaatgctgcgtagcggtctcgagcacgctttctttttagttcagccacagtaaggtcactaacatcttcatgcgaacctgtgcacatatgcacattgctgggtgtattgaaggatgcaccgcggttttctgcacatggatgactattaggcgtcaccacaggatgcacaacttcatggccagcatcacaagtatataatcatcacattggtgttggtggatacagattgagatttaattaaaataggaaacaagcaatatggtaaaataccatttgaagaagttggactggcacttaacgacttgtttccacccctgccccgtctatttgtcaaaccggaaccacttatatttgttatatcagcaagagggcctaagaaaggaacacacgagtgaaattagcatgcaaagaattaatatgcacagcacattttcccggtttgaacatgaatgtatttgtgtcaggttgctgctaagaaaaacactacatacaaaccaattaatttatgaaagaatggatcaaatgaggatatttttatgtaacataagggacgagaggttctcttccttttttatttatttctttttttgtgaagctgagagaggcccccggccccagctccctcgagttcatcattcgagtcaataacatgcacaaaactaacctgtttttgtacatgattgtgtagagcccccaagaatgttatccat
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| CDS seq | atggataacattcttgggggctctacacaatcatgtacaaaaacaggccctcttgctgatataacaaatataagtggttccggtttgacaaatagacggggcaggggtggaaacaagtcgttaagtgccagtccaacttcttcaaatgaaaaccgcggtgcatccttcaatacacccagcaatgtgcatatgtgcacaggttcgcatgaagatgttagtgaccttactgtggctgaactaaaaagaaagcgtgctcgagaccgctacgcagcattgaccccacagcaaaaggatgataggaacaagaaggcacgtgaaagaaggaaacgaaagaaggaggaaactcaagaggaaactcaagcttcagccccacttggcgatatttcaaatataagtgttgttgatataatgaagtgccacttggaagataatgattcttccacactgcatcaaggaaaaagagaagcttcccatctcaatatcacacccagacgtctcccatttacaatcatcaacaatgtagctcactatggtcccaacgaagttccaatgagtcgcgtcactcaattaacaaccctaaacatgaatagtgctgacttcactgttcataattcaggatgtgaaaatcattatgatccaatcgtaacaagtgggaaccaaaatacccatagcccaatgcatgaatccggtatttttcaaggcaacgatcgaaatgagtgcgaccatgatgacgacatctctctaggtaacactaatttaacttcattatatgttttttaa
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| Protein seq | MDNILGGSTQSCTKTGPLADITNISGSGLTNRRGRGGNKSLSASPTSSNENRGASFNTPSNVHMCTGSHEDVSDLTVAELKRKRARDRYAALTPQQKDDRNKKARERRKRKKEETQEETQASAPLGDISNISVVDIMKCHLEDNDSSTLHQGKREASHLNITPRRLPFTIINNVAHYGPNEVPMSRVTQLTTLNMNSADFTVHNSGCENHYDPIVTSGNQNTHSPMHESGIFQGNDRNECDHDDDISLGNTNLTSLYVF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0017270 | OsKeNa_02g0017270.01 | Chr02 | 16511948 | 16513426 | - | NAM | ||
| CDS seq | atggataacattcttgggggctctacacaatcatgtacaaaaacaggccctcttgctgatataacaaatataagtggttccggtttgacaaatagacggggcaggggtggaaacaagtcgttaagtgccagtccaacttcttcaaatgaaaaccgcggtgcatccttcaatacacccagcaatgtgcatatgtgcacaggttcgcatgaagatgttagtgaccttactgtggctgaactaaaaagaaagcgtgctcgagaccgctacgcagcattgaccccacagcaaaaggatgataggaacaagaaggcacgtgaaagaaggaaacgaaagaaggaggaaactcaagaggaaactcaagcttcagccccacttggcgatatttcaaatataagtgttgttgatataatgaagtgccacttggaagataatgattcttccacactgcatcaaggaaaaagagaagcttcccatctcaatatcacacccagacgtctcccatttacaatcatcaacaatgtagctcactatggtcccaacgaagttccaatgagtcgcgtcactcaattaacaaccctaaacatgaatagtgctgacttcactgttcataattcaggatgtgaaaatcattatgatccaatcgtaacaagtgggaaccaaaatacccatagcccaatgcatgaatccggtatttttcaaggcaacgatcgaaatgagtgcgaccatgatgacgacatctctctaggtaacactaatttaacttcattatatgttttttaa
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| Protein seq | MDNILGGSTQSCTKTGPLADITNISGSGLTNRRGRGGNKSLSASPTSSNENRGASFNTPSNVHMCTGSHEDVSDLTVAELKRKRARDRYAALTPQQKDDRNKKARERRKRKKEETQEETQASAPLGDISNISVVDIMKCHLEDNDSSTLHQGKREASHLNITPRRLPFTIINNVAHYGPNEVPMSRVTQLTTLNMNSADFTVHNSGCENHYDPIVTSGNQNTHSPMHESGIFQGNDRNECDHDDDISLGNTNLTSLYVF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 4.081394 | 3.620298 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0480200 | RBH | 1.289702 | 1.089188 | 2.803492 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g27870 | RBH | 0.988404 | 0.856161 | 1.449868 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0480200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0017190 | RBH | 0.207696 | 0.0 | 3.893564 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0017170 | RBH | 1.077101 | 4.276462 | 7.884839 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0017080 | RBH | 0.335811 | 0.061862 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0016950 | RBH | 0.560695 | 0.000000 | 6.459615 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0275700 | RBH | 1.752269 | 3.668755 | 2.586771 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0016730 | RBH | 0.281265 | 0.000000 | 0.119957 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0295300 | RBH | 1.840118 | 3.3648915 | 4.187631 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0017260 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0016830 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0017380 | RBH | 6.218217 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0017170 | RBH | 0.000000 | 0.150702 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0016870 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G017320 | RBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0017040 | RBH | 1.588313 | 18.161440 | 1.203617 |
