Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0011280 | OGI:02025630 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:8872760-8874844 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aacttaaatgccttctttaagagattaagtagttttgattgaaattcaattatagaataccaatcttggtgacacagcatcaaaacgaattttgatacgagaatgtatgaaaataagctgaaatttctcaagcttgctgagttataaaattgaagcagaataccccaatccatacgaaatgttacgcctaaaccagaccaaacgcaacagataacttcgcaccaatcaccaaagctactgttttctccattggattcagagaagagaatcctcgtcagcgttaggaccaccaccaccatcgccatccatggcgactaggacgaggccgaggaggacgtacagggggaggcgtcgccgccgccgccgccgctggccgccgccttggtgtactcctccatgtccctcttgtacgccgccatggcctccgcggccttgccgttccacgcctgcttctccgcctCcccgagctccttccacttcaccgacacgagcgcggtcagcgtggagctcgccacgccggggcgctcctccgccagctgccgcctcgcctccttgctgaacagcaggaacgacgacgccggcttcttgggccggttcgggtcggcggcagcggcggcgccgcccaccttcttcttcctctgctcctccttggtcttcttgatgatgttgtccgtcttctccttcttcttgagcagctggagcgcctcctgcttcatgatcttcttctgctcctcctcctctttctcctggcacgccgcctcctcctgcttcctctgccggtacgccgccatctccacctggtactcctccctctgcttccgcgccgccgcctcgaacggcgccttctccgcctcggacatcgccttccactcctcgccggtgatcctgccgatctcggggacgttcttcttctcggcgacgagcgccgcgcggcgctgctgggtgtagacgaagtaggcggacatgggctgcttcggctttgaggggtccttctccttcttcttcttcttccctttcttgctcgccttcttgttgtcaccaccgtcgccgtcgtcgtcggcctcctgccggaacttgagatactgctcgagcagctccttggcggtcctctgcatctgctcctcctcgagcagcttcatcgcctcggcctcgcgcttctcctgcccgaccacctgcaggtacgcctccttctcctgcctgtacctctcctcgtacggctgcttctcctccgcgcccagcgccttccacttggcgcccagagcgttggagacctccttgaagtcggcgtccgggctctccttcttgatctgaaacaggcaagcatttcgtcaaacatctgacgggcagtaaaacgaagcgaagaaaatggtgcgggtttcgtacctcgttccactggtccttgcaccagaggacgtacgccgggcagggcttcttcctctcatggccggccttgcccttgcccttcttcttctctccttcctggtctttctcgatcaatgccttcacgagaggaatgctctgcaaggcaaaaccaaatcgaatcagatcaaaattcacaagaataaccacgaagaaaatggatgcagaaatcagatcgtggctcaaatcgcgcaagttgagatcgagagcataccacggtgggcttgaactccttggcgcgctggaccttcttgagctcggcctggaggcgaccctgctcctcctccttcctgcggatgacctcgtcccgctcccgcaccatctcctccgccttctccttctccagccgcagctcctccagcatcccctgcagctccgacaccgcgtccaccaccgacgcctgttcctccgccgccgccgcagccgcggccttccccttgctgctcttcgacgtcgccctcttcgccttctgcggcggcgacaggatcccggcggcagcggccacgtcggccttcccggcggagatgttagcgtcgttgtccagcaccgccgtcagcgccttccggcccctcccgcccttcctactacccgccgtcgccatggaatctagcacagagagagacgagctagggtttcgaatcggaggaggagatgggaatgaatggt
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| CDS seq | atggcgacggcgggtagtaggaagggcgggaggggccggaaggcgctgacggcggtgctggacaacgacgctaacatctccgccgggaaggccgacgtggccgctgccgccgggatcctgtcgccgccgcagaaggcgaagagggcgacgtcgaagagcagcaaggggaaggccgcggctgcggcggcggcggaggaacaggcgtcggtggtggacgcggtgtcggagctgcaggggatgctggaggagctgcggctggagaaggagaaggcggaggagatggtgcgggagcgggacgaggtcatccgcaggaaggaggaggagcagggtcgcctccaggccgagctcaagaaggtccagcgcgccaaggagttcaagcccaccgtgagcattcctctcgtgaaggcattgatcgagaaagaccaggaaggagagaagaagaagggcaagggcaaggccggccatgagaggaagaagccctgcccggcgtacgtcctctggtgcaaggaccagtggaacgagatcaagaaggagagcccggacgccgacttcaaggaggtctccaacgctctgggcgccaagtggaaggcgctgggcgcggaggagaagcagccgtacgaggagaggtacaggcaggagaaggaggcgtacctgcaggtggtcgggcaggagaagcgcgaggccgaggcgatgaagctgctcgaggaggagcagatgcagaggaccgccaaggagctgctcgagcagtatctcaagttccggcaggaggccgacgacgacggcgacggtggtgacaacaagaaggcgagcaagaaagggaagaagaagaagaaggagaaggacccctcaaagccgaagcagcccatgtccgcctacttcgtctacacccagcagcgccgcgcggcgctcgtcgccgagaagaagaacgtccccgagatcggcaggatcaccggcgaggagtggaaggcgatgtccgaggcggagaaggcgccgttcgaggcggcggcgcggaagcagagggaggagtaccaggtggagatggcggcgtaccggcagaggaagcaggaggaggcggcgtgccaggagaaagaggaggaggagcagaagaagatcatgaagcaggaggcgctccagctgctcaagaagaaggagaagacggacaacatcatcaagaagaccaaggaggagcagaggaagaagaaggtgggcggcgccgccgctgccgccgacccgaaccggcccaagaagccggcgtcgtcgttcctgctgttcagcaaggaggcgaggcggcagctggcggaggagcgccccggcgtggcgagctccacgctgaccgcgctcgtgtcggtgaagtggaaggagctcgggGaggcggagaagcaggcgtggaacggcaaggccgcggaggccatggcggcgtacaagagggacatggaggagtacaccaaggcggcggccagcggcggcggcggcggcgacgcctccccctgtacgtcctcctcggcctcgtcctag
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| Protein seq | MATAGSRKGGRGRKALTAVLDNDANISAGKADVAAAAGILSPPQKAKRATSKSSKGKAAAAAAAEEQASVVDAVSELQGMLEELRLEKEKAEEMVRERDEVIRRKEEEQGRLQAELKKVQRAKEFKPTVSIPLVKALIEKDQEGEKKKGKGKAGHERKKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKALGAEEKQPYEERYRQEKEAYLQVVGQEKREAEAMKLLEEEQMQRTAKELLEQYLKFRQEADDDGDGGDNKKASKKGKKKKKEKDPSKPKQPMSAYFVYTQQRRAALVAEKKNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREEYQVEMAAYRQRKQEEAACQEKEEEEQKKIMKQEALQLLKKKEKTDNIIKKTKEEQRKKKVGGAAAAADPNRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKAAEAMAAYKRDMEEYTKAAASGGGGGDASPCTSSSASS |
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| Function | High mobility group B protein 13 [UniProtKB/Swiss-Prot:Q9T012] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0011280 | OsKeNa_02g0011280.01 | Chr02 | 8872760 | 8874844 | - | NAM | ||
| CDS seq | atggcgacggcgggtagtaggaagggcgggaggggccggaaggcgctgacggcggtgctggacaacgacgctaacatctccgccgggaaggccgacgtggccgctgccgccgggatcctgtcgccgccgcagaaggcgaagagggcgacgtcgaagagcagcaaggggaaggccgcggctgcggcggcggcggaggaacaggcgtcggtggtggacgcggtgtcggagctgcaggggatgctggaggagctgcggctggagaaggagaaggcggaggagatggtgcgggagcgggacgaggtcatccgcaggaaggaggaggagcagggtcgcctccaggccgagctcaagaaggtccagcgcgccaaggagttcaagcccaccgtgagcattcctctcgtgaaggcattgatcgagaaagaccaggaaggagagaagaagaagggcaagggcaaggccggccatgagaggaagaagccctgcccggcgtacgtcctctggtgcaaggaccagtggaacgagatcaagaaggagagcccggacgccgacttcaaggaggtctccaacgctctgggcgccaagtggaaggcgctgggcgcggaggagaagcagccgtacgaggagaggtacaggcaggagaaggaggcgtacctgcaggtggtcgggcaggagaagcgcgaggccgaggcgatgaagctgctcgaggaggagcagatgcagaggaccgccaaggagctgctcgagcagtatctcaagttccggcaggaggccgacgacgacggcgacggtggtgacaacaagaaggcgagcaagaaagggaagaagaagaagaaggagaaggacccctcaaagccgaagcagcccatgtccgcctacttcgtctacacccagcagcgccgcgcggcgctcgtcgccgagaagaagaacgtccccgagatcggcaggatcaccggcgaggagtggaaggcgatgtccgaggcggagaaggcgccgttcgaggcggcggcgcggaagcagagggaggagtaccaggtggagatggcggcgtaccggcagaggaagcaggaggaggcggcgtgccaggagaaagaggaggaggagcagaagaagatcatgaagcaggaggcgctccagctgctcaagaagaaggagaagacggacaacatcatcaagaagaccaaggaggagcagaggaagaagaaggtgggcggcgccgccgctgccgccgacccgaaccggcccaagaagccggcgtcgtcgttcctgctgttcagcaaggaggcgaggcggcagctggcggaggagcgccccggcgtggcgagctccacgctgaccgcgctcgtgtcggtgaagtggaaggagctcgggGaggcggagaagcaggcgtggaacggcaaggccgcggaggccatggcggcgtacaagagggacatggaggagtacaccaaggcggcggccagcggcggcggcggcggcgacgcctccccctgtacgtcctcctcggcctcgtcctag
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| Protein seq | MATAGSRKGGRGRKALTAVLDNDANISAGKADVAAAAGILSPPQKAKRATSKSSKGKAAAAAAAEEQASVVDAVSELQGMLEELRLEKEKAEEMVRERDEVIRRKEEEQGRLQAELKKVQRAKEFKPTVSIPLVKALIEKDQEGEKKKGKGKAGHERKKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKALGAEEKQPYEERYRQEKEAYLQVVGQEKREAEAMKLLEEEQMQRTAKELLEQYLKFRQEADDDGDGGDNKKASKKGKKKKKEKDPSKPKQPMSAYFVYTQQRRAALVAEKKNVPEIGRITGEEWKAMSEAEKAPFEAAARKQREEYQVEMAAYRQRKQEEAACQEKEEEEQKKIMKQEALQLLKKKEKTDNIIKKTKEEQRKKKVGGAAAAADPNRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKAAEAMAAYKRDMEEYTKAAASGGGGGDASPCTSSSASS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 9.772863 | 2.146323 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0258250 | RBH | 0.0 | 0.0 | 6.497133 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g15810 | RBH | 0.0 | 0.0 | 1.331975 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0258200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0011160 | RBH | 0.0 | 27.643642 | 2.848526 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0011130 | RBH | 0.0 | 22.986319 | 3.093211 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0010990 | RBH | 0.0 | 1.890138 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0011070 | RBH | 0.0 | 58.561184 | 5.963838 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0146500 | RBH | 11.380411 | 4.962926 | 3.97338 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0010890 | RBH | 0.0 | 2.844330 | 0.129917 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0154300 | RBH | 14.4901455 | 0.161827 | 34.1246825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0011390 | RBH | 0.0 | 0.849803 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0010990 | RBH | 0.0 | 48.661503 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0011380 | RBH | 0.0 | 53.403561 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0011320 | RBH | 0.0 | 3.773941 | 0.596927 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0011010 | RBH | 0.0 | 38.010136 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G011340 | RBH | 0.0 | 16.968342 | 2.939617 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0011140 | RBH | 0.0 | 31.204546 | 4.975452 |
