Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0004840 | OGI:02010150 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:3251653-3253662 | ||||||||
| Gene Symbol | OsFbox068, OsFbox68, Os_F0346 | ||||||||||
| DNA seq | acacgcaccgcttcgccccgccgaagagacggacgcctccacacgtctcttcctcttccttgatactGAgagagagagagaggaggaggaggaccagccatccacccgcgcggccgcggcgaatccatccaatccgcgtagatgcggcggcggcggcggtagcggggagggggtggaaatggtgggggatcaggaggggaggcggcagcggcggcgggggtggggggaggaggaggaggaccgcatctcggacctccccgacgcgctgcggctccagattctgagcctcctgccgctcaagtcggcaatccggacgggggccctctcgtcgcggtggcgggggttgtgggagcagcggtggcccgacccgtcgtcgctcgacgtgcggctgccatcggggggaggagccacgtcggcgtcggtggcggcgctgcgggccgagcacctcgcaggcatcgaccggcgcgggaggcggcggatggacctcctctcgctcgccttccacgcggggcagctcgcgccccccgagctgaagcggttcatcgagtacgcggcggcgtgtgacgtggaggaggtgcggctgcggctcgacggcggcggcgggcgtggggcgagagggggcacgcggcggcccggcgcgctcgccgtgcacttccccattgggagcaagctcctcgcgcggctgtcggtgcgggggctccacctcacggcgtccgccaacgcgatggtcgccacgctcgaggtgatccatttccactccgtctccctcaccgacgccgcgctgcggcgggtggtctccgcctgcccgcgcctccgcgagctcgagctccggtactgccgacacctccggcgtatcgatttcaccgtcggggcctccaatctcaagagcctcaccgtcgtcgactgctcccgcgccacggagctgcgcgtgccatcggcgccccgcctccggtcgttccggttcagcggcgcgttcctctgcagcaacattttcggtagcaccgcggattgtgtcgagcatctctacctctgctccggcgggccggagacaggtttgccgcgcaccaacttgccgtcggcagtcccccgcctgtcaaacctcaccgtactcaccctatgcagcattgctctccaggtctgcccaagtatctatgccgtctttggttgcgtttcattttgttgcttttgtgcttatacttgcacgccttgtagtatgtctctgcttcagtagccacccccaacgtggagaagagcttgaacagcttgagagagctccagctgctcatgttcggaatggccaactccaacctcgcagatatctatagcttcctcaaggcctgccgttgtcctcagttggagaggctcttcgtgcaggttgttatttctaggcaaaatgcattttgttgctagtttacttataggtgtgtgccatttatgtacttaacatattgtgttcaacattgcagctcccaacaaacacttatgattcgttcacgacgaattatttggaggtagcagaggaagaaccgcctgaaggcggattagaaaaccttcggttggtcaagatgacaaacttcaagggttatcgcaatgaactacgactggtggatttcctgctgaggaaagctagccgtcttaacaaactgttcctgattgctcccaaggaggttcacccacaaggcctccgaaaggtccactcggaggcactgccccattttctcaagacagatgtattgcatcttgaaagagcttcagcaatcgcccagataatttttgatgagtctgttagtcctcagatactacccttgcattcggaggtctttgtcagaatttagctgaaataagcaattgcaccgtagtttaattgctgctccttaattattaccattatagcttttaggcaacagacatgaaaaagatctgcaagcatacaaagtttggtataatatatttgcaatttatgttttgaaatgtctgggtaagatggttgaaatttgtggtattccagtc
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| CDS seq | atggtgggggatcaggaggggaggcggcagcggcggcgggggtggggggaggaggaggaggaccgcatctcggacctccccgacgcgctgcggctccagattctgagcctcctgccgctcaagtcggcaatccggacgggggccctctcgtcgcggtggcgggggttgtgggagcagcggtggcccgacccgtcgtcgctcgacgtgcggctgccatcggggggaggagccacgtcggcgtcggtggcggcgctgcgggccgagcacctcgcaggcatcgaccggcgcgggaggcggcggatggacctcctctcgctcgccttccacgcggggcagctcgcgccccccgagctgaagcggttcatcgagtacgcggcggcgtgtgacgtggaggaggtgcggctgcggctcgacggcggcggcgggcgtggggcgagagggggcacgcggcggcccggcgcgctcgccgtgcacttccccattgggagcaagctcctcgcgcggctgtcggtgcgggggctccacctcacggcgtccgccaacgcgatggtcgccacgctcgaggtgatccatttccactccgtctccctcaccgacgccgcgctgcggcgggtggtctccgcctgcccgcgcctccgcgagctcgagctccggtactgccgacacctccggcgtatcgatttcaccgtcggggcctccaatctcaagagcctcaccgtcgtcgactgctcccgcgccacggagctgcgcgtgccatcggcgccccgcctccggtcgttccggttcagcggcgcgttcctctgcagcaacattttcggtagcaccgcggattgtgtcgagcatctctacctctgctccggcgggccggagacaggtttgccgcgcaccaacttgccgtcggcagtcccccgcctgtcaaacctcaccgtactcaccctatgcagcattgctctccagtatgtctctgcttcagtagccacccccaacgtggagaagagcttgaacagcttgagagagctccagctgctcatgttcggaatggccaactccaacctcgcagatatctatagcttcctcaaggcctgccgttgtcctcagttggagaggctcttcgtgcagctcccaacaaacacttatgattcgttcacgacgaattatttggaggtagcagaggaagaaccgcctgaaggcggattagaaaaccttcggttggtcaagatgacaaacttcaagggttatcgcaatgaactacgactggtggatttcctgctgaggaaagctagccgtcttaacaaactgttcctgattgctcccaaggaggttcacccacaaggcctccgaaaggtccactcggaggcactgccccattttctcaagacagatgtattgcatcttgaaagagcttcagcaatcgcccagataatttttgatgagtctgttagtcctcagatactacccttgcattcggaggtctttgtcagaatttag
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| Protein seq | MVGDQEGRRQRRRGWGEEEEDRISDLPDALRLQILSLLPLKSAIRTGALSSRWRGLWEQRWPDPSSLDVRLPSGGGATSASVAALRAEHLAGIDRRGRRRMDLLSLAFHAGQLAPPELKRFIEYAAACDVEEVRLRLDGGGGRGARGGTRRPGALAVHFPIGSKLLARLSVRGLHLTASANAMVATLEVIHFHSVSLTDAALRRVVSACPRLRELELRYCRHLRRIDFTVGASNLKSLTVVDCSRATELRVPSAPRLRSFRFSGAFLCSNIFGSTADCVEHLYLCSGGPETGLPRTNLPSAVPRLSNLTVLTLCSIALQYVSASVATPNVEKSLNSLRELQLLMFGMANSNLADIYSFLKACRCPQLERLFVQLPTNTYDSFTTNYLEVAEEEPPEGGLENLRLVKMTNFKGYRNELRLVDFLLRKASRLNKLFLIAPKEVHPQGLRKVHSEALPHFLKTDVLHLERASAIAQIIFDESVSPQILPLHSEVFVRI |
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| Function | Putative F-box/FBD/LRR-repeat protein At4g13965 [UniProtKB/Swiss-Prot:Q3EA38] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0004840 | OsKeNa_02g0004840.01 | Chr02 | 3251653 | 3253662 | + | NAM | ||
| CDS seq | atggtgggggatcaggaggggaggcggcagcggcggcgggggtggggggaggaggaggaggaccgcatctcggacctccccgacgcgctgcggctccagattctgagcctcctgccgctcaagtcggcaatccggacgggggccctctcgtcgcggtggcgggggttgtgggagcagcggtggcccgacccgtcgtcgctcgacgtgcggctgccatcggggggaggagccacgtcggcgtcggtggcggcgctgcgggccgagcacctcgcaggcatcgaccggcgcgggaggcggcggatggacctcctctcgctcgccttccacgcggggcagctcgcgccccccgagctgaagcggttcatcgagtacgcggcggcgtgtgacgtggaggaggtgcggctgcggctcgacggcggcggcgggcgtggggcgagagggggcacgcggcggcccggcgcgctcgccgtgcacttccccattgggagcaagctcctcgcgcggctgtcggtgcgggggctccacctcacggcgtccgccaacgcgatggtcgccacgctcgaggtgatccatttccactccgtctccctcaccgacgccgcgctgcggcgggtggtctccgcctgcccgcgcctccgcgagctcgagctccggtactgccgacacctccggcgtatcgatttcaccgtcggggcctccaatctcaagagcctcaccgtcgtcgactgctcccgcgccacggagctgcgcgtgccatcggcgccccgcctccggtcgttccggttcagcggcgcgttcctctgcagcaacattttcggtagcaccgcggattgtgtcgagcatctctacctctgctccggcgggccggagacaggtttgccgcgcaccaacttgccgtcggcagtcccccgcctgtcaaacctcaccgtactcaccctatgcagcattgctctccagtatgtctctgcttcagtagccacccccaacgtggagaagagcttgaacagcttgagagagctccagctgctcatgttcggaatggccaactccaacctcgcagatatctatagcttcctcaaggcctgccgttgtcctcagttggagaggctcttcgtgcagctcccaacaaacacttatgattcgttcacgacgaattatttggaggtagcagaggaagaaccgcctgaaggcggattagaaaaccttcggttggtcaagatgacaaacttcaagggttatcgcaatgaactacgactggtggatttcctgctgaggaaagctagccgtcttaacaaactgttcctgattgctcccaaggaggttcacccacaaggcctccgaaaggtccactcggaggcactgccccattttctcaagacagatgtattgcatcttgaaagagcttcagcaatcgcccagataatttttgatgagtctgttagtcctcagatactacccttgcattcggaggtctttgtcagaatttag
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| Protein seq | MVGDQEGRRQRRRGWGEEEEDRISDLPDALRLQILSLLPLKSAIRTGALSSRWRGLWEQRWPDPSSLDVRLPSGGGATSASVAALRAEHLAGIDRRGRRRMDLLSLAFHAGQLAPPELKRFIEYAAACDVEEVRLRLDGGGGRGARGGTRRPGALAVHFPIGSKLLARLSVRGLHLTASANAMVATLEVIHFHSVSLTDAALRRVVSACPRLRELELRYCRHLRRIDFTVGASNLKSLTVVDCSRATELRVPSAPRLRSFRFSGAFLCSNIFGSTADCVEHLYLCSGGPETGLPRTNLPSAVPRLSNLTVLTLCSIALQYVSASVATPNVEKSLNSLRELQLLMFGMANSNLADIYSFLKACRCPQLERLFVQLPTNTYDSFTTNYLEVAEEEPPEGGLENLRLVKMTNFKGYRNELRLVDFLLRKASRLNKLFLIAPKEVHPQGLRKVHSEALPHFLKTDVLHLERASAIAQIIFDESVSPQILPLHSEVFVRI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.185994 | 0.584141 | 1.437250 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0160200 | RBH | 1.969075 | 1.411329 | 2.478943 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06520 | RBH | 1.354306 | 0.953013 | 0.586602 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0160200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004640 | RBH | 0.515616 | 3.452213 | 2.066945 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026610 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004650 | RBH | 0.000000 | 7.018242 | 3.747993 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004550 | RBH | 0.282342 | 0.137435 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004600 | RBH | 9.026130 | 3.308638 | 8.113494 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0055600 | RBH | 9.814787 | 31.4664615 | 29.674848 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004570 | RBH | 0.066623 | 0.340992 | 0.938332 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004980 | RBH | 0.089707 | 0.229820 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004540 | RBH | 0.618364 | 4.083704 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004860 | RBH | 4.096920 | 3.714262 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004800 | RBH | 0.899636 | 0.517847 | 0.474153 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004570 | RBH | 0.230206 | 4.643396 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004620 | RBH | 0.413387 | 2.804728 | 1.236717 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004580 | RBH | 0.257587 | 4.285147 | 2.110235 |
