Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0003020 | OGI:02006800 | 14/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:1979427-1983407 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccaagaatctctctctcgcgcgcggatcgcctcgaattcgcgagctcgcggaaatggcggccatgtcgtcgcgctgtgcggcttcctcgtcctcatccgcgttcctcagagctccgcttcccggcggcaggcaccaccagggctcttgcggcttcgtcgccgccggcggcggtgctaagacgacggtgagggttgcggcggcgctcgacacggaggccacggcgaaggctggcaagtcgtcctCccgggcgcggcgggcgaggaaggacggcggcgagcccggtggctcctcctccaccgcgctgcttgctcctacccatcccgacggcggcggcggcggcggcgtggcgctcgacgacgtgatcgtgaacccggtggggctggggcggcggtcccggcagatcttcgacgaggtgtggcgcaagttctcgcggctcgggcagatgtcgacggtggcgtcgccggagcaggaggagcaggagggcgtcctcttccgcggcggcggcccgatgtgcgacttcgccgtccccggtgcgcaggacaccaccgtcctcgtcgtcggcgccaccagccgcatcggccgcatcgtcgtccgcaagctcatgctccgtggctacaacgtcaaggtcacttacttttacctcttctttcttgtcaagctttctcatgtcaaatcaacaaattttgatcaagggtgtgtttagatctttgggggtaaagcttttaaagtatactgacacatatttgaagtattaaacgtagactaataacaaaacattacagagtccatctgtagactgcaagataatcttattaaggctaattaatccgtcattagcaaatgtttacggtaacatcacattgtcaaattatggcgtaattaggctcaaaagattcgtcttgcaatttatctatgttattttttttttgaaacaggctctggtcagaaggaatgatcaagaagtgatcgacatgcttccaagatctgtggacattgtggttggtgatgttggcgatgcttcttcagttcaagctgccgtgtcaggctgcaacaaggtaatctactgcgcaactgcacggtcaacgattaccggtgatctcaacagagttgataaccaaggcgtgaggaatgtcaccaaggccttccaggtagttcttgtgaaaaatctttgaagaaacatgcaaatcaatcttatttagatttctgatatgtttactgaactgtgatttactttgcaattcaggattactacaatcagttggctcagtcaagggctggtaaaagcagcaagagcaaactgtcgattgccaagttcaaatctgccaaatctcttcaaggatgggaagtgaatcagggatcatactttcaggatatttatccttctagattcgatgaaggcaccgatgcatcgtttgaaatatctgaaaatggacaggctgttttctcaggtatcacctgatatgaaagctattacatcatgatctctgaattgtacactatagtgagattgccttttttaaaaaagtattcagatatattgcttcagttgatgatttttcatttgtttttaattctcttatcaaaattttctgtgattagggtttgttttcacaagaggtggatatgttgaagtgtcgaaacggctttcgctcccactaggttccaccctagacaggtgtgataagattcttcagtttattttttcttaataagtttgcctgatgttgcaaaatcatgacatgatctgttctttgttatgctgccatgttctacctgaagatacgacggcttacttctatccgtgggtggaaatggaagatcatatgttatcatccttgagactggtccactagctgacacctcacagagcaagaaatattttgctcggatgaacactaaagtagggttttgcagggtaagtggcaagtgatgatcccacttcactaaattacctgtttctgcattgctaatcggagtgatcagttaactaaatgctgaaaatattcttgttctgttcaggtgagagtgccgttctcagatttcaggccagtgaacccacaggaccctcctcttgacccttttcttgtgcacacattaaccataaggtttgaacccaaaaaacaggtcagtgcaaaatgatttgttgaatcaattggagataggcaatgcttctggaagttgttagtttaccaataaaatccttgtgcagagacctggtgactcgtctcaaggagctagtgacccaagaaatttccagcttataatggaatttataaaagctctacctgtaagtaattcacctgattctatcaattgatctgccatttaaatttccaatgttgcagatatttaccggaaatttcatttgttttttgcagactggtcaagaaacagacattgttttggtttcatgcacaggctctggaatcgaacctaacagaagagaacaagtcctcaaagcaaagaaggtatcacttctcataaccacacatcaaatgcaaactgttcttgatgcactcttgatacaaacattaaccagtttattatctctctaggctggagaggatgcactgaggagatccggcctcggatatacaattgtatgcccaggtcctctgcaggtacaacatctgaatgaattggattgtctttttttttcttttcctaaatgtatattttcagcaccagttgtttctcatgtagtgcattgcatattgatattgctgctgaatttcagtacaagctgtagctacataaaccttagtgtcaaaccgatgaaactaaatattcatcaagcaagcagccaagatttaagcatgcaagttgatcactaatcatagaattgagtgtgaaatttgagtataaattatgcttatttccaagccccaaatatactttcttcagtccatactacagtatagtataacatagtatcccttcttcattccaggaagaacctggcggtcagcgtgctctgatctttgatcaagggaacagaatctctcaggtgacatagcattcactgcgtgcaattatgcctgatataattgcatgttcaatgttagtatacatgctaaccattaggcttttcaactgaaatataaatgcagggtatcagctgtgccgacgtagcagatatctgtgtcaaggcattgcacgattcaacagcaagaaacaaaagctttgatgtaaggaaaaaaaaaaccttgtattgtgaactggccatttgtgcaacaggtagtgaaatgactaaccaggacaccaacctgatttgtgtaggtgtgctatgaacatgtctcaaagcaaggggatgagttgtatgaacttgtaagccccaaaactgaaacttcagtagattcatctttgtacagcaattcgcaaaatttcttctctgatctgtctgtgttttgcacttttgctaatgatctgtcgaattgttttcaggtggctcatttgcctgacaaggcgaacaattacctggcaccagctctctctgttcttgagaagaacacctgattgatcaaatgatcagtgacccatcaaattttatgtcattctgggtcagattattgtccatgtgtatatgattcatcttgtaaaggttttccttttctcatagaaaccgtgtggagtccacttgtgccatgatgaccgtctccagcacaaaagtgaaggagttgttgacaaaaaaaatccatggtcctactactttcccatctctgtaaaacttgtagaattttcataacaattgggcatgaattagggtgtgtttagttcacactaaaattgaaagtttggttgaaattagaacaatgtgacggaaaagttggaagtttgtgtatgtaggaaagttttaatgtgatgAaaaagttggaagtttgaagaaaaaatttgtaactaaactcggccttaggcccatcctatatagcaattttgagaactttgaagaagtaatgagcatgaggaaagtgcatttgtct
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| CDS seq | atggcggccatgtcgtcgcgctgtgcggcttcctcgtcctcatccgcgttcctcagagctccgcttcccggcggcaggcaccaccagggctcttgcggcttcgtcgccgccggcggcggtgctaagacgacggtgagggttgcggcggcgctcgacacggaggccacggcgaaggctggcaagtcgtcctCccgggcgcggcgggcgaggaaggacggcggcgagcccggtggctcctcctccaccgcgctgcttgctcctacccatcccgacggcggcggcggcggcggcgtggcgctcgacgacgtgatcgtgaacccggtggggctggggcggcggtcccggcagatcttcgacgaggtgtggcgcaagttctcgcggctcgggcagatgtcgacggtggcgtcgccggagcaggaggagcaggagggcgtcctcttccgcggcggcggcccgatgtgcgacttcgccgtccccggtgcgcaggacaccaccgtcctcgtcgtcggcgccaccagccgcatcggccgcatcgtcgtccgcaagctcatgctccgtggctacaacgtcaaggtaatctactgcgcaactgcacggtcaacgattaccggtgatctcaacagagttgataaccaaggcgtgaggaatgtcaccaaggccttccaggattactacaatcagttggctcagtcaagggctggtaaaagcagcaagagcaaactgtcgattgccaagttcaaatctgccaaatctcttcaaggatgggaagtgaatcagggatcatactttcaggatatttatccttctagattcgatgaaggcaccgatgcatcgtttgaaatatctgaaaatggacaggctgttttctcagggtttgttttcacaagaggtggatatgttgaagtgtcgaaacggctttcgctcccactaggttccaccctagacagatacgacggcttacttctatccgtgggtggaaatggaagatcatatgttatcatccttgagactggtccactagctgacacctcacagagcaagaaatattttgctcggatgaacactaaagtagggttttgcagggtgagagtgccgttctcagatttcaggccagtgaacccacaggaccctcctcttgacccttttcttgtgcacacattaaccataaggtttgaacccaaaaaacagagacctggtgactcgtctcaaggagctagtgacccaagaaatttccagcttataatggaatttataaaagctctacctactggtcaagaaacagacattgttttggtttcatgcacaggctctggaatcgaacctaacagaagagaacaagtcctcaaagcaaagaaggctggagaggatgcactgaggagatccggcctcggatatacaattgtatgcccaggtcctctgcaggaagaacctggcggtcagcgtgctctgatctttgatcaagggaacagaatctctcagggtatcagctgtgccgacgtagcagatatctgtgtcaaggcattgcacgattcaacagcaagaaacaaaagctttgatgtgtgctatgaacatgtctcaaagcaaggggatgagttgtatgaacttgtggctcatttgcctgacaaggcgaacaattacctggcaccagctctctctgttcttgagaagaacacctga
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| Protein seq | MAAMSSRCAASSSSSAFLRAPLPGGRHHQGSCGFVAAGGGAKTTVRVAAALDTEATAKAGKSSSRARRARKDGGEPGGSSSTALLAPTHPDGGGGGGVALDDVIVNPVGLGRRSRQIFDEVWRKFSRLGQMSTVASPEQEEQEGVLFRGGGPMCDFAVPGAQDTTVLVVGATSRIGRIVVRKLMLRGYNVKVIYCATARSTITGDLNRVDNQGVRNVTKAFQDYYNQLAQSRAGKSSKSKLSIAKFKSAKSLQGWEVNQGSYFQDIYPSRFDEGTDASFEISENGQAVFSGFVFTRGGYVEVSKRLSLPLGSTLDRYDGLLLSVGGNGRSYVIILETGPLADTSQSKKYFARMNTKVGFCRVRVPFSDFRPVNPQDPPLDPFLVHTLTIRFEPKKQRPGDSSQGASDPRNFQLIMEFIKALPTGQETDIVLVSCTGSGIEPNRREQVLKAKKAGEDALRRSGLGYTIVCPGPLQEEPGGQRALIFDQGNRISQGISCADVADICVKALHDSTARNKSFDVCYEHVSKQGDELYELVAHLPDKANNYLAPALSVLEKNT |
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| Function | Protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic [UniProtKB/Swiss-Prot:Q8W4D6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0003020 | OsKeNa_02g0003020.01 | Chr02 | 1979429 | 1983101 | + | NAM | ||
| CDS seq | atggcggccatgtcgtcgcgctgtgcggcttcctcgtcctcatccgcgttcctcagagctccgcttcccggcggcaggcaccaccagggctcttgcggcttcgtcgccgccggcggcggtgctaagacgacggtgagggttgcggcggcgctcgacacggaggccacggcgaaggctggcaagtcgtcctCccgggcgcggcgggcgaggaaggacggcggcgagcccggtggctcctcctccaccgcgctgcttgctcctacccatcccgacggcggcggcggcggcggcgtggcgctcgacgacgtgatcgtgaacccggtggggctggggcggcggtcccggcagatcttcgacgaggtgtggcgcaagttctcgcggctcgggcagatgtcgacggtggcgtcgccggagcaggaggagcaggagggcgtcctcttccgcggcggcggcccgatgtgcgacttcgccgtccccggtgcgcaggacaccaccgtcctcgtcgtcggcgccaccagccgcatcggccgcatcgtcgtccgcaagctcatgctccgtggctacaacgtcaaggtaatctactgcgcaactgcacggtcaacgattaccggtgatctcaacagagttgataaccaaggcgtgaggaatgtcaccaaggccttccaggattactacaatcagttggctcagtcaagggctggtaaaagcagcaagagcaaactgtcgattgccaagttcaaatctgccaaatctcttcaaggatgggaagtgaatcagggatcatactttcaggatatttatccttctagattcgatgaaggcaccgatgcatcgtttgaaatatctgaaaatggacaggctgttttctcagggtttgttttcacaagaggtggatatgttgaagtgtcgaaacggctttcgctcccactaggttccaccctagacagatacgacggcttacttctatccgtgggtggaaatggaagatcatatgttatcatccttgagactggtccactagctgacacctcacagagcaagaaatattttgctcggatgaacactaaagtagggttttgcagggtgagagtgccgttctcagatttcaggccagtgaacccacaggaccctcctcttgacccttttcttgtgcacacattaaccataaggtttgaacccaaaaaacagagacctggtgactcgtctcaaggagctagtgacccaagaaatttccagcttataatggaatttataaaagctctacctactggtcaagaaacagacattgttttggtttcatgcacaggctctggaatcgaacctaacagaagagaacaagtcctcaaagcaaagaaggctggagaggatgcactgaggagatccggcctcggatatacaattgtatgcccaggtcctctgcaggaagaacctggcggtcagcgtgctctgatctttgatcaagggaacagaatctctcagggtatcagctgtgccgacgtagcagatatctgtgtcaaggcattgcacgattcaacagcaagaaacaaaagctttgatgtgtgctatgaacatgtctcaaagcaaggggatgagttgtatgaacttgtggctcatttgcctgacaaggcgaacaattacctggcaccagctctctctgttcttgagaagaacacctga
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| Protein seq | MAAMSSRCAASSSSSAFLRAPLPGGRHHQGSCGFVAAGGGAKTTVRVAAALDTEATAKAGKSSSRARRARKDGGEPGGSSSTALLAPTHPDGGGGGGVALDDVIVNPVGLGRRSRQIFDEVWRKFSRLGQMSTVASPEQEEQEGVLFRGGGPMCDFAVPGAQDTTVLVVGATSRIGRIVVRKLMLRGYNVKVIYCATARSTITGDLNRVDNQGVRNVTKAFQDYYNQLAQSRAGKSSKSKLSIAKFKSAKSLQGWEVNQGSYFQDIYPSRFDEGTDASFEISENGQAVFSGFVFTRGGYVEVSKRLSLPLGSTLDRYDGLLLSVGGNGRSYVIILETGPLADTSQSKKYFARMNTKVGFCRVRVPFSDFRPVNPQDPPLDPFLVHTLTIRFEPKKQRPGDSSQGASDPRNFQLIMEFIKALPTGQETDIVLVSCTGSGIEPNRREQVLKAKKAGEDALRRSGLGYTIVCPGPLQEEPGGQRALIFDQGNRISQGISCADVADICVKALHDSTARNKSFDVCYEHVSKQGDELYELVAHLPDKANNYLAPALSVLEKNT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0003020 | OsKeNa_02g0003020.02 | Chr02 | 1979427 | 1983407 | + | IsoSeq | ||
| CDS seq | ccaagaatctctctctcgcgcgcggatcgcctcgaattcgcgagctcgcggaaatggcggccatgtcgtcgcgctgtgcggcttcctcgtcctcatccgcgttcctcagagctccgcttcccggcggcaggcaccaccagggctcttgcggcttcgtcgccgccggcggcggtgctaagacga |
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| Protein seq | PRISLSRADRLEFASSRKWRPCRRAVRLPRPHPRSSELRFPAAGTTRALAASSPPAAVLRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 1980052 | 1980483 | + | OsKeNa_02g0003020.02 | OsKeNa_02g0003020.02,OsKeNa_02g0003020.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.400816 | 0.000000 | 4.593225 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0137700 | RBH | 10.691051 | 11.010221 | 7.818889 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g04510 | RBH | 6.916778 | 7.091728 | 1.939273 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0137700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0002940 | RBH | 0.201125 | 1.368868 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0028190 | RBH | 1.100886 | 0.0 | 1.086214 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0002960 | RBH | 0.368168 | 1.170696 | 10.331143 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0002930 | RBH | 0.189060 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0002960 | RBH | 50.134895 | 0.000000 | 2.466189 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0002870 | RBH | 0.136130 | 0.0 | 4.754684 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0130500 | SBH | 39.0300865 | 8.035832 | 2.6665015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0002940 | RBH | 4.180456 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0002870 | RBH | 3.129886 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0002940 | RBH | 24.101233 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0003030 | RBH | 0.475946 | 0.0 | 5.949595 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0002990 | RBH | 0.160840 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G002970 | RBH | 0.167311 | 0.231587 | 1.591639 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0002920 | RBH | 0.575685 | 0.000000 | 13.048923 |
